53e13de0-8f18-46ea-8143-c70c1218eb9c-asg-MAGScoT_cleanbin_000011
Roseibium sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA first public
2024-02-08
GAL
University of Derby
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
53e13de0-8f18-46ea-8143-c70c1218eb9c
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
broad-scale environmental context
aquatic biome
collected_by
MARY ALICE COFFROTH
collecting institution
University at Buffalo
collection date
2020-12-10
completeness score
99.68
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.84
environmental medium
dinoflagellate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
not collected
geographic location (longitude)
not collected
geographic location (region and locality)
University Park, PA | Pennsylvania State University
habitat
Unknown
host life stage
vegetative cell
host scientific name
Breviolum psygmophilum
host sex
not applicable
host taxid
2518962
identified_by
JOHN PARKINSON
identifier_affiliation
UNIVERSITY OF SOUTH FLORIDA
investigation type
metagenome-assembled genome
isolation_source
Dinoflagellate: Breviolum psygmophilum
local environmental context
marine biome
metagenomic source
dinoflagellate metagenome
number of standard tRNAs extracted
55
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA115283660
sample name
53e13de0-8f18-46ea-8143-c70c1218eb9c
scientific_name
Roseibium sp.
sequencing method
Pacbio Sequel II
specimen_id
UDUK0000070
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
pyBrePsyg16.Roseibium_sp_1