Metagenome-assembled genome: JAN10c-MIKI3.9_1677235822
Bacteroidales bacterium
ENA-FIRST-PUBLIC
2023-03-01
ENA-LAST-UPDATE
2023-03-01
External Id
SAMEA112684792
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-01T16:18:20Z
INSDC last update
2023-03-01T16:18:20Z
INSDC status
public
Submitter Id
JAN10c-MIKI3.9_1677235822
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
not provided
completeness score
97.5
completeness software
CheckM
contamination score
0.64
environmental medium
feces
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
The integrated mouse gut metagenome catalog (iMGMC), comprising 4.6 million unique genes and 660 high-quality metagenome-assembled genomes (MAGs) linked to reconstructed full-length 16S rRNA gene sequences
sample derived from
SAMEA5689835
sample name
JAN10c-MIKI3.9_1677235822
scientific_name
Bacteroidales bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach