ENTB
Enterocloster aldenensis
ENA-FIRST-PUBLIC
2024-02-29T00:36:26Z
ENA-LAST-UPDATE
2024-02-29T00:36:26Z
External Id
SAMEA115094466
INSDC center name
BIOCEV
INSDC first public
2024-02-29T00:36:26Z
INSDC last update
2024-02-29T00:36:26Z
INSDC status
public
Submitter Id
ena-SAMPLE-TAB-10-01-2024-09:53:06:039-238938
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes v.3.14.0, k-mers set 21,33,55,77,99,127, default parameters otherwise
binning parameters
coverage and kmer
binning software
MaxBin v2.2.7
broad-scale environmental context
In vitro culture derivated from samples from the gut of chinchilla (Chinchilla lanigera)
collection date
2021-08
completeness score
94.4
completeness software
MaxBin v2.2.7 marker set 107
contamination score
3
environmental medium
Incubated at 37ºC
geographic location (country and/or sea)
Czech Republic
geographic location (latitude)
+49.980897
geographic location (longitude)
+14.487539
investigation type
metagenome-assembled genome
isolation_source
The genomes here correspond to 24 metagenome-assembled genomes of the 30 bacteria identified that grow together with Monocercomonoides exilis in TYSGM-9 medium.
local environmental context
TYSGM-9 medium
metagenomic source
rodent metagenome
project name
PRJEB70623
sample derived from
SAMEA115084009-SAMEA115084017
sample name
ena-SAMPLE-TAB-10-01-2024-09:53:06:039-238938
scientific_name
Enterocloster aldenensis
sequencing method
HiSeq4000
taxonomic identity marker
16S gene