1d4c260f-266b-49f6-b369-6300309a0b82-asg-MAGScoT_cleanbin_000053
Alphaproteobacteria bacterium
16S recovered
No
16S recovery software
PROKKA (version 1.14.5)
ENA first public
2024-02-08
GAL
Nova Southeastern University
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
1d4c260f-266b-49f6-b369-6300309a0b82
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
broad-scale environmental context
aquatic biome
collected_by
MAYA BRITSTEIN
collecting institution
University of Haifa
collection date
2013-12-23
completeness score
84.73
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.75
depth
12
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Israel
geographic location (latitude)
29.50
geographic location (longitude)
34.92
geographic location (region and locality)
Eilat
habitat
coral reef
host life stage
adult
host scientific name
Diacarnus erythraeanus
host sex
not applicable
host taxid
879318
identified_by
ILIA BURGSDORF | RINAT BAR SHALOM
identifier_affiliation
University of Haifa Israel
investigation type
metagenome-assembled genome
isolation_source
Sponge: Diacarnus erythraeanus
local environmental context
marine coral reef biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
39
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA115283595
sample name
1d4c260f-266b-49f6-b369-6300309a0b82
scientific_name
Alphaproteobacteria bacterium
sequencing method
Pacbio Sequel II
specimen_id
NSU0043101
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
odDiaEryt1.Alphaproteobacteria_6