7ae110e9-9449-4b3d-b700-a6418a0efccb-asg-bin.41
Planktomarina temperata
16S recovered
No
16S recovery software
PROKKA (version 1.14.5)
ENA first public
2024-02-06
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
7ae110e9-9449-4b3d-b700-a6418a0efccb
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
binning parameters
coverage; graph
binning software
MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
GRACE MCCORMACK
collecting institution
NUIG
collection date
2019-05-17
completeness score
80.97
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
1.58
depth
0.5
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Ireland
geographic location (latitude)
53.15
geographic location (longitude)
-9.01
geographic location (region and locality)
Co. Clare | Coranroo
habitat
ROCKY SHORE
host life stage
adult
host scientific name
Haliclona indistincta
host sex
not applicable
host taxid
608205
identified_by
GRACE MCCORMACK
identifier_affiliation
NUIG, IRELAND
investigation type
metagenome-assembled genome
isolation_source
Sponge: Haliclona indistincta
local environmental context
marine benthic environment
metagenomic source
sponge metagenome
number of standard tRNAs extracted
25
organism part
WHOLE ORGANISM
project name
ASG
relationship
UNKNOWN
sample derived from
SAMEA115179116
sample name
7ae110e9-9449-4b3d-b700-a6418a0efccb
scientific_name
Planktomarina temperata
sequencing method
Pacbio Sequel II
specimen_id
GHC0000046
specimen_voucher
MIIG1388
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
odHalIndi2.Planktomarina_temperata_1