m07-metabat.12
uncultured Roseateles sp.
assembly software
metaSPAdes v3.11.1
binning software
MetaBAT2 v2.12.1
organism
uncultured Paucibacter sp.
broad-scale environmental context
cell culturing
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
collection date
2018-03-30
sample derived from
ERS16316891
geographic location (longitude)
8.5965403
taxonomic identity marker
GTDB-Tk v0.1.6
binning parameters
metaSPAdes: k-mer sizes 21,33,55,77,99,127. Bbmap v37.02: kfilter 31, subfilter 15, maxindel 80.
completeness score
49.14
contamination score
1.72
environmental medium
freshwater ecosystem
geographic location (latitude)
47.2903783
scientific_name
uncultured Paucibacter sp.
local environmental context
microcosm
ENA-FIRST-PUBLIC
2023-09-30T00:31:21Z
metagenomic source
freshwater metagenome
project name
Bacterial Functional Diversity
ENA-LAST-UPDATE
2023-09-30T00:31:21Z
completeness software
CheckM v1.0.3
geographic location (country and/or sea)
Switzerland
isolation_source
freshwater culture
ENA-FIRST-PUBLIC
2023-09-30
ENA-LAST-UPDATE
2023-09-30