Metagenome-assembled genome: Munich_Feces.31_1677664259
Porphyromonadaceae bacterium UBA7173
ENA-FIRST-PUBLIC
2023-03-01
ENA-LAST-UPDATE
2023-03-01
External Id
SAMEA112699420
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-01T16:18:22Z
INSDC last update
2023-03-01T16:18:22Z
INSDC status
public
Submitter Id
Munich_Feces.31_1677664259
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2014-06-12
completeness score
52.59
completeness software
CheckM
contamination score
0.0
environmental medium
feces
geographic location (country and/or sea)
Germany
geographic location (latitude)
48.398293
geographic location (longitude)
11.720893
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
The mouse intestinal bacterial collection (miBC) represents a unique resource of cultivable bacteria isolates from mice that enables engineering of minimal gut consortia.
sample derived from
SAMEA3515986
sample name
Munich_Feces.31_1677664259
scientific_name
Porphyromonadaceae bacterium UBA7173
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach