0205a7da-6f4a-455a-b233-9837dfd45054-asg-bin.164
Amoebophilaceae bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2024-08-06
GAL
University of Derby
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
0205a7da-6f4a-455a-b233-9837dfd45054
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
Victor Bonito
collecting institution
Reef Explorer Fiji
collection date
2021-06-30
completeness score
80.22
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.0
depth
2
environmental medium
adult coral tissue
geographic location (country and/or sea)
Fiji
geographic location (latitude)
-18.21
geographic location (longitude)
177.69
geographic location (region and locality)
Viti Levu | Coral Coast
habitat
reef flat moat
host life stage
adult
host scientific name
Echinopora horrida
host sex
not applicable
host taxid
983564
identified_by
Victor Bonito
identifier_affiliation
Reef Explorer Fiji
investigation type
metagenome-assembled genome
isolation_source
Coral: Echinopora horrida
local environmental context
marine benthic biome
metagenomic source
coral metagenome
number of standard tRNAs extracted
35
organism part
WHOLE ORGANISM
project name
ASG
sample collection method
hammer, chisel, screw driver
sample derived from
SAMEA115908288
sample name
0205a7da-6f4a-455a-b233-9837dfd45054
scientific_name
Amoebophilaceae bacterium
sequencing method
Pacbio Sequel II
specimen_id
UDUK0000333
specimen_voucher
FJTOL-7
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
jaEchHorr1.Amoebophilaceae_1