m12-metabat.1
uncultured Limnohabitans sp.
INSDC center name
UNIVERSITY OF ZURICH
Submitter Id
m12-metabat.1
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes v3.11.1
binning parameters
metaSPAdes: k-mer sizes 21,33,55,77,99,127. Bbmap v37.02: kfilter 31, subfilter 15, maxindel 80.
binning software
MetaBAT2 v2.12.1
broad-scale environmental context
cell culturing
collection date
2018-03-30
completeness score
97.68
completeness software
CheckM v1.0.3
contamination score
0.05
environmental medium
freshwater ecosystem
geographic location (country and/or sea)
Switzerland
geographic location (latitude)
47.2903783
geographic location (longitude)
8.5965403
isolation_source
freshwater culture
local environmental context
microcosm
metagenomic source
freshwater metagenome
project name
Bacterial Functional Diversity
sample derived from
ERS16316896
sample name
m12-metabat.1
scientific_name
uncultured Limnohabitans sp.
taxonomic identity marker
GTDB-Tk v0.1.6