a4c9f560-596a-4ee3-945a-2a417e784e0a-asg-MAGScoT_cleanbin_000219
Dehalococcoidia bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
No
ENA first public
2024-08-06
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
a4c9f560-596a-4ee3-945a-2a417e784e0a
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
KATHRIN BUSCH
collecting institution
GEOMAR
collection date
2018-08-09
completeness score
72.94
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.33
depth
333
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Norway
geographic location (latitude)
71.59
geographic location (longitude)
21.37
geographic location (region and locality)
Troms√∏flaket_C
habitat
continental shelf:plain
host life stage
adult
host scientific name
Stryphnus fortis
host sex
not applicable
host taxid
1006811
identified_by
HANS TORE RAPP
identifier_affiliation
UiB, Norway
investigation type
metagenome-assembled genome
isolation_source
Sponge: Stryphnus fortis
local environmental context
marine benthic biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
30
organism part
WHOLE ORGANISM
project name
ASG
relationship
unknown
sample derived from
SAMEA115905275
sample name
a4c9f560-596a-4ee3-945a-2a417e784e0a
scientific_name
Dehalococcoidia bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000039
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
odStrFort4.Dehalococcoidia_3