fc0dd30a-e630-42a1-adb3-ec7f7f10efc5-asg-bin.192
Candidatus Endoriftia persephone
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA first public
2024-02-08
GAL
Queen Mary University of London
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
fc0dd30a-e630-42a1-adb3-ec7f7f10efc5
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
ROBERT VRIJENHOEK
collecting institution
MONTEREY BAY AQUARIUM RESEARCH INSTITUTE
collection date
1999-01-18
completeness score
99.18
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
1.05
depth
2338
environmental medium
adult annelid tissue
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
-31.86
geographic location (longitude)
-112.04
geographic location (region and locality)
Southern East Pacific Rise | 32S site
habitat
hydrothermal vent
host life stage
not collected
host scientific name
Oasisia sp. SBJ-2009
host sex
not collected
host taxid
611778
identified_by
GREG ROUSE
identifier_affiliation
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
investigation type
metagenome-assembled genome
isolation_source
Annelid: Oasisia sp. SBJ-2009
local environmental context
marine hydrothermal vent biome
metagenomic source
annelid metagenome
number of standard tRNAs extracted
50
organism part
WHOLE ORGANISM
project name
ASG
proxy voucher
NOT PROVIDED
sample collection device or method
collected by the Human Operated Vehicle Alvin
sample derived from
SAMEA115283593
sample name
fc0dd30a-e630-42a1-adb3-ec7f7f10efc5
scientific_name
Candidatus Endoriftia persephone
sequencing method
Pacbio Sequel II
specimen_id
QMOUL0000254
specimen_voucher
NOT_APPLICABLE
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
wsOasSpea1.Endoriftia_persephone_1
voucher institution url
https://ror.org/04v7hvq31