toti_illumina_novaseq_WGS_20240129_zymo_magbead_R2
Canis lupus familiaris
chimera check software
minitax
broad-scale environmental context
Csongrad county
host scientific name
Canis lupus familiaris
sequence quality check
FastQC
collection date
2024-01-06
target gene
whole genome
host family relationship
Harsanyi-Tekergo Bator
geographic location (longitude)
20.14824
host subject id
not applicable
host subspecific genetic lineage
cross-breeding of Hungarian Puli with French and German herding dogs originated from 17. century
host common name
Hungarian herding terrier: Pumi
host sex
male
temperature
20
nucleic acid extraction
ZymoBIOMICS 96 MagBead DNA Kit, Zymo
nucleic acid amplification
not provided
geographic location (country and/or sea)
Hungary
library reads sequenced
not provided
sample storage temperature
-80
adapters
AGATCGGAAGAG
organism
Canis lupus familiaris
library construction method
IDT xGen DNA Lib Prep Kit
library size
not provided
host taxid
9615
environmental medium
no
geographic location (latitude)
46.253
scientific_name
Canis lupus familiaris
common name
dog
target subfragment
not applicable
host diet
omnivore
sample storage duration
n.a
pcr primers
not applicable
host body product
stool
pcr conditions
missing: third party data
local environmental context
Szeged
organism count
not collected
project name
Ultra-deep, hybrid metagenomic sequencing of canine gut microbiome
sequencing method
Illumina, IDT xGen DNA Lib Prep Kit
host age
14 years
library screening strategy
pcr based
multiplex identifiers
missing: third party data