Iricinus ixodes mitochondrion genome Ir_d6 MAG
Ixodes ricinus
Iricinus ixodes mitochondrion MAG assembled from the holobiome
ENA first public
2024-07-08
External Id
SAMEA114862734
INSDC center name
National Institute of Public Health and Environment (RIVM)
INSDC last update
2023-12-11T14:05:26Z
INSDC status
public
Submitter Id
Ir_d6_MT
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
SPAdes v3.15.4, Polypolish v0.5.0
binning parameters
N/A
binning software
Tick holobiome metagenomic reads were filtered using Ixodes reference mitochondrial genomes, mapped reads were then assembled
broad-scale environmental context
dune
collection date
2021-10-14
common name
castor bean tick
completeness score
100
completeness software
manual
contamination score
0
environmental medium
Arthropoda
geographic location (country and/or sea)
Netherlands
geographic location (latitude)
52.303761
geographic location (longitude)
4.533193
isolation_source
Ixodes ricinus
local environmental context
coastal dune
metagenomic source
tick metagenome
project name
Comparative genomics of pathogenic Rickettsial symbionts in ticks
sample derived from
ERS17138671
sample name
Ir_d6_MT
scientific_name
Ixodes ricinus
taxonomic identity marker
Whole genome