1bc48c12-1be2-457a-b3dc-448c4f8b7fe0-asg-bin.125
Flavobacteriaceae bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2024-08-07
GAL
University of Derby
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
1bc48c12-1be2-457a-b3dc-448c4f8b7fe0
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
PEDRO FRADE
collecting institution
Natural History Museum Vienna
collection date
2022-09-20
completeness score
78.08
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
5.26
depth
10.8
environmental medium
adult coral tissue
geographic location (country and/or sea)
Curacao
geographic location (latitude)
12.14
geographic location (longitude)
-69.00
geographic location (region and locality)
Boca Sami | Snake Bay
habitat
coral bed surrounded by sand and living coral reef
host life stage
adult
host scientific name
Madracis auretenra
host sex
not collected
host taxid
999287
identified_by
PEDRO FRADE
identifier_affiliation
Natural History Museum Vienna
investigation type
metagenome-assembled genome
isolation_source
Coral: Madracis auretenra
local environmental context
marine benthic biome
metagenomic source
coral metagenome
number of standard tRNAs extracted
31
organism part
WHOLE ORGANISM
project name
ASG
sample collection method
fragmented using bone cutters while SCUBA diving
sample derived from
SAMEA115909930
sample name
1bc48c12-1be2-457a-b3dc-448c4f8b7fe0
scientific_name
Flavobacteriaceae bacterium
sequencing method
Pacbio Sequel II
specimen_id
UDUK0000417
specimen_voucher
NOT_PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
jaMadAure2.Flavobacteriaceae_1