BV-28-C-a
marine metagenome
Coastal metagenome taken 100m from Mytilus occurence (20 cm above the sediment)
ENA first public
2024-05-14
External Id
SAMEA114579107
INSDC center name
IOW Leibniz-Institut fur Ostseeforschung Warnemuende
INSDC last update
2023-11-06T10:23:54Z
INSDC status
public
Submitter Id
130870:7c5a4a83-4c9c-42c9-97d6-2ddd1da6df67
broad-scale environmental context
temperate marginal sea biome [ENVO:01000856]
broker name
GFBIO
collection date
2021-08-10
depth
1
environmental medium
brackish water [ENVO:00002019]
environmental package
water
environmental_sample
yes
experiment
Lib_1
geographic location (country and/or sea)
Estonia
geographic location (latitude)
59.36005
geographic location (longitude)
23.97406
geographic location (region and locality)
Pakri Saared
investigation type
mimarks-survey
local environmental context
microbial community [PCO:1000004]
nucleic acid extraction
PowerSoil DNA isolation - DNeasy PowerSoil Pro Kit
pcr primers
FWD:CCTACGGGNGGCWGCAG REV:GACTACHVGGGTATCTAATCC
project name
16S and 18S rRNA amplicon sequencing of coastal microbial communities across the salinity gradient of the Baltic Sea in pelagic, benthic, and biofilm environments
run
L01
sample material processing
filtered over 0.22 micrometer filters and shockfrozen
sample name
130870:7c5a4a83-4c9c-42c9-97d6-2ddd1da6df67
sample_description
Coastal metagenome taken 100m from Mytilus occurence (20 cm above the sediment)
scientific_name
marine metagenome
sequencing method
Illumina MiSeq
submitted to insdc
true
target subfragment
V3-V4
total depth of water column
1
water environmental package
water