S0605
marine eukaryotic metagenome
Specimen S0605 of single cell foraminifera from Plemmirio-Italy collected from Rubbles at 4 m depth
ENA first public
2024-12-15
INSDC center name
MARUM - Center for Marine Environmental Sciences
INSDC status
public
Submitter Id
153284:62ef9ee7-1d76-48cd-904e-963aec203491
broad-scale environmental context
marine biome [ENVO:00000447]
broker name
GFBIO
collection date
2019-09-20
depth
4
depth category
Deep
dna_concentration
1.985
environmental medium
coral reef [ENVO:00000150] | pebble sediment [ENVO:01000116]
environmental package
host associated
experiment_id
S0605_PCR_1
geographic location (country and/or sea)
Italy
geographic location (latitude)
37.039672
geographic location (longitude)
15.306688
geographic location (region and locality)
Plemmirio
host associated environmental package
host associated
host taxid
1929295.0
investigation type
mimarks-specimen
library_number
11
local environmental context
microbial community [PCO:1000004] | environmental system determined by an organism [ENVO:01001000]
multiplex_identifier_forward
TGTGTCTC
multiplex_identifier_reverse
GTACTGCG
n_cycles_pcr
32
pcr primers
FWD:CCTACGGGNGGCWGCAG;REV:GACTACHVGGGTATCTAATCC
pcr_batch_number
PCR-S103
pcr_replicate
S0605_1
project name
ForaInva
purified pcr product voucher id
PR-0929
run_information
R1 file contains forward reads - sequences were generated in mixed orientation, separate read files submitted for each orientation
sample name
153284:62ef9ee7-1d76-48cd-904e-963aec203491
sample_description
Specimen S0605 of single cell foraminifera from Plemmirio-Italy collected from Rubbles at 4 m depth
scientific_name
marine eukaryotic metagenome
sequencing method
Illumina MiSeq
submitted to insdc
true
substrate_type
Rubbles
target subfragment
V3-V4
total depth of water column
4.0