vaginal metagenome
collection_date
2021
env_broad_scale
ENVO_01000219
env_local_scale
UBERON_0019042
env_medium
UBERON_0003133
geo_loc_name
USA: Massachusetts
host
Homo sapiens
lat_lon
42.28603074 N 71.79048774 W
file_name
MelodyVagV3V4x10017xBSL1xQDPSPxIndA_S25_L001_R1_001.fastq.gz
sample_type
Vaginal
elevation
0m
env_biome
urban_biome
env_feature
human_associated_habitat
env_material
mucose
study_id_mom
10017
id_merged_simple
10017_BSL
id_merged
10017_BSL1
diet_info
y
run
Melody
uid
83042
study_arm_x
Arm_1
study_group_x
IBD_IBD_AID
cd_uc_hc_diagnosis_x
CD
ibd_group_x
IBD
timepoint_x
baseline_27_weeks
timepoint2
BSL
timepoint4
BSL1
study_id_mom1
10017
group
IBD_AID
total_grams
2306
energy
1379
total_fat
62
total_carbohydrate
136
total_protein
72
animal_protein
57
vegetable_protein
15
alcohol
0
cholesterol
445
total_saturated_fatty_acids_sfa_
22
total_monounsaturated_fatty_acids_mufa_
21
total_polyunsaturated_fatty_acids_pufa_
12
fructose
18
galactose
1
glucose
13
lactose
4
maltose
1
sucrose
14
starch
67
total_dietary_fiber
10
soluble_dietary_fiber
2
insoluble_dietary_fiber
7
pectins
1
total_vitamin_a_activity_international_units_
2231
beta_carotene_equivalents_derived_from_provitamin_a_carotenoids_
736
retinol
302
vitamin_d_calciferol_
2
total_alpha_tocopherol_equivalents
6
vitamin_e_total_alpha_tocopherol_
5
beta_tocopherol
0
gamma_tocopherol
9
delta_tocopherol
2
vitamin_k_phylloquinone_
35
vitamin_c_ascorbic_acid_
25
thiamin_vitamin_b1_
1
riboflavin_vitamin_b2_
2
niacin_vitamin_b3_
16
pantothenic_acid
4
vitamin_b_6_pyridoxine_pyridoxyl__pyridoxamine_
1
total_folate
228
vitamin_b_12_cobalamin_
3
calcium
634
phosphorus
913
magnesium
184
iron
9
zinc
9
copper
1
selenium
113
sodium
2371
potassium
1481
sfa_4_0_butyric_acid_
1
sfa_6_0_caproic_acid_
0
sfa_8_0_caprylic_acid_
0
sfa_10_0_capric_acid_
1
sfa_12_0_lauric_acid_
1
sfa_14_0_myristic_acid_
2
sfa_16_0_palmitic_acid_
12
sfa_17_0_margaric_acid_
0
sfa_18_0_stearic_acid_
5
sfa_20_0_arachidic_acid_
0
sfa_22_0_behenic_acid_
0
mufa_14_1_myristoleic_acid_
0
mufa_16_1_palmitoleic_acid_
1
mufa_18_1_oleic_acid_
19
mufa_20_1_gadoleic_acid_
0
mufa_22_1_erucic_acid_
0
pufa_18_2_linoleic_acid_
10
pufa_18_3_linolenic_acid_
1
pufa_18_4_parinaric_acid_
0
pufa_20_4_arachidonic_acid_
0
pufa_20_5_eicosapentaenoic_acid_epa_
0
pufa_22_5_docosapentaenoic_acid_dpa_
0
pufa_22_6_docosahexaenoic_acid_dha_
0
tryptophan
1
threonine
3
isoleucine
3
leucine
6
lysine
5
methionine
2
cystine
1
phenylalanine
3
tyrosine
3
valine
4
arginine
4
histidine
2
alanine
3
aspartic_acid
6
glutamic_acid
14
glycine
3
proline
5
serine
3
aspartame
0
saccharin
0
caffeine
62
phytic_acid
316
oxalic_acid
89
x3_methylhistidine
14
sucrose_polyester
0
ash
12
water
2047
perc_calories_from_fat
41
perc_calories_from_carbohydrate
37
perc_calories_from_protein
22
perc_calories_from_alcohol
0
perc_calories_from_sfa
14
perc_calories_from_mufa
14
perc_calories_from_pufa
8
polyunsaturated_to_saturated_fat_ratio
1
cholesterol_to_saturated_fatty_acid_index
45
total_vitamin_a_activity_retinol_equivalents_
424
trans_18_1_trans_octadecenoic_acid_
1
trans_18_2_trans_octadecadienoic_acid_
0
trans_16_1_trans_hexadecenoic_acid_
0
total_trans_fatty_acids_trans_
1
user_nutrient_1
0
user_nutrient_2
0
user_nutrient_3
0
user_nutrient_4
0
user_nutrient_5
0
user_nutrient_6
0
user_nutrient_7
0
user_nutrient_8
0
user_nutrient_9
0
user_nutrient_10
0
beta_carotene_provitamin_a_carotenoid_
564
alpha_carotene_provitamin_a_carotenoid_
80
beta_cryptoxanthin_provitamin_a_carotenoid_
265
lutein__zeaxanthin
1098
lycopene
2749
dietary_folate_equivalents
269
natural_folate
169
synthetic_folate
59
total_vitamin_a_activity_retinol_activity_equivalents_
363
energy_kilojoules_
5769
niacin_equivalents
31
total_sugars
51
omega_3_fatty_acids
1
manganese
3
vitamin_e_international_units_
8
natural_alpha_tocopherol_rrr_alpha_tocopherol_or_d_alpha_tocopherol_
5
synthetic_alpha_tocopherol_all_rac_alpha_tocopherol_or_dl_alpha_tocopherol_
0
daidzein
0
genistein
0
glycitein
0
coumestrol
0
biochanin_a
0
formononetin
0
added_sugars_by_available_carbohydrate_
33
acesulfame_potassium
0
sucralose
0
available_carbohydrate
125
glycemic_index_glucose_reference_
59
glycemic_index_bread_reference_
85
glycemic_load_glucose_reference_
75
glycemic_load_bread_reference_
107
choline
380
betaine
98
erythritol
0
inositol
0
isomalt
0
lactitol
0
maltitol
0
mannitol
0
pinitol
0
sorbitol
0
xylitol
0
nitrogen
12
total_conjugated_linoleic_acid_cla_18_2_
0
cla_cis_9_trans_11
0
cla_trans_10_cis_12
0
tagatose
0
vitamin_d2_ergocalciferol_
0
vitamin_d3_cholecalciferol_
2
added_sugars_by_total_sugars_
32
total_grains_ounce_equivalents_
6
whole_grains_ounce_equivalents_
1
refined_grains_ounce_equivalents_
4
pufa_18_3_n_3_alpha_linolenic_acid_ala_
1
solid_fats
31
citrus_juice
0
fruit_juice_excluding_citrus_juice
0
citrus_fruit
0
fruit_excluding_citrus_fruit
1
avocado_and_similar
0
fried_fruits
0
fruit_based_savory_snack
0
dark_green_vegetables
0
deep_yellow_vegetables
0
tomato
0
white_potatoes
0
fried_potatoes
0
other_starchy_vegetables
0
legumes_cooked_dried_beans_
0
other_vegetables
0
fried_vegetables
0
vegetable_juice
0
vegetable_based_savory_snack
0
grains_flour_and_dry_mixes_whole_grain
0
grains_flour_and_dry_mixes_some_whole_grain
0
grains_flour_and_dry_mixes_refined_grain
0
loaf_type_bread_and_plain_rolls_whole_grain
0
loaf_type_bread_and_plain_rolls_some_whole_grain
2
loaf_type_bread_and_plain_rolls_refined_grain
2
other_breads_quick_breads_corn_muffins_tortillas_whole_grain
0
other_breads_quick_breads_corn_muffins_tortillas_some_whole_grain
0
other_breads_quick_breads_corn_muffins_tortillas_refined_grain
0
crackers_whole_grain
1
crackers_some_whole_grain
0
crackers_refined_grain
0
pasta_whole_grain
0
pasta_some_whole_grain
0
pasta_refined_grain
0
ready_to_eat_cereal_not_presweetened_whole_grain
0
ready_to_eat_cereal_not_presweetened_some_whole_grain
0
ready_to_eat_cereal_not_presweetened_refined_grain
0
ready_to_eat_cereal_presweetened_whole_grain
0
ready_to_eat_cereal_presweetened_some_whole_grain
0
ready_to_eat_cereal_presweetened_refined_grain
0
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_whole_grain
0
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_some_whole_grai
0
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_refined_grain
0
snack_bars_whole_grain
0
snack_bars_some_whole_grain
0
snack_bars_refined_grain
0
snack_chips_whole_grain
0
snack_chips_some_whole_grain
0
snack_chips_refined_grain
0
popcorn
0
flavored_popcorn
0
baby_food_grain_mixtures_refined_grain
0
beef
2
lean_beef
0
veal
0
lean_veal
0
lamb
0
lean_lamb
0
fresh_pork
0
lean_fresh_pork
0
cured_pork
0
lean_cured_pork
0
game
0
poultry
1
lean_poultry
0
fried_chicken_commercial_entre_and_fast_food
2
fish_fresh_and_smoked
0
lean_fish_fresh_and_smoked
0
fried_fish_commercial_entre_and_fast_food
0
shellfish
0
fried_shellfish_commercial_entre_and_fast_food
0
cold_cuts_and_sausage
1
lean_cold_cuts_and_sausage
0
organ_meats
0
baby_food_meat_mixtures
0
meat_based_savory_snack
0
eggs
1
egg_substitute
0
nuts_and_seeds
0
nut_and_seed_butters
0
meat_alternatives
0
milk_whole
0
milk_reduced_fat
0
milk_low_fat_and_fat_free
0
milk_nondairy
0
ready_to_drink_flavored_milk_whole
0
ready_to_drink_flavored_milk_reduced_fat
0
ready_to_drink_flavored_milk_low_fat_and_fat_free
0
sweetened_flavored_milk_beverage_powder_with_non_fat_dry_milk
0
artificially_sweetened_flavored_milk_beverage_powder_with_non_fat_dry_milk
0
sweetened_flavored_milk_beverage_powder_without_non_fat_dry_milk
0
artificially_sweetened_flavored_milk_beverage_powder_without_non_fat_dry_milk
0
cheese_full_fat
1
cheese_reduced_fat
0
cheese_low_fat_and_fat_free
0
cheese_nondairy
0
yogurt_sweetened_whole_milk
0
yogurt_sweetened_low_fat
0
yogurt_sweetened_fat_free
0
yogurt_artificially_sweetened_whole_milk
0
yogurt_artificially_sweetened_low_fat
0
yogurt_artificially_sweetened_fat_free
0
yogurt_nondairy
0
frozen_dairy_dessert
0
frozen_nondairy_dessert
0
pudding_and_other_dairy_dessert
0
artificially_sweetened_pudding_and_other_dairy_dessert
0
cream
0
cream_reduced_fat
0
cream_low_fat_and_fat_free
0
cream_nondairy
0
dairy_based_sweetened_meal_replacement_supplement
0
dairy_based_artificially_sweetened_meal_replacement_supplement
0
infant_formula
0
infant_formula_nondairy
0
margarine_regular
0
margarine_reduced_fat
0
oil
0
shortening
0
butter_and_other_animal_fats_regular
1
butter_and_other_animal_fats_reduced_fat
0
salad_dressing_regular
0
salad_dressing_reduced_fat_reduced_calorie_fat_free
0
sugar
0
sugar_substitute
0
syrup_honey_jam_jelly_preserves
1
sauces_sweet_regular
0
sauces_sweet_reduced_fat_reduced_calorie_fat_free
0
chocolate_candy
0
non_chocolate_candy
0
frosting_or_glaze
0
sweetened_soft_drinks
0
artificially_sweetened_soft_drinks
0
unsweetened_soft_drinks
0
sweetened_fruit_drinks
1
artificially_sweetened_fruit_drinks
0
sweetened_tea
0
artificially_sweetened_tea
0
unsweetened_tea
3
sweetened_coffee
0
artificially_sweetened_coffee
0
unsweetened_coffee
0
sweetened_coffee_substitutes
0
artificially_sweetened_coffee_substitutes
0
unsweetened_coffee_substitutes
0
sweetened_water
0
artificially_sweetened_water
0
unsweetened_water
3
nondairy_based_sweetened_meal_replacement_supplement
0
nondairy_based_artificially_sweetened_meal_replacement_supplement
0
nondairy_based_unsweetened_meal_replacement_supplement
0
non_alcoholic_beer
0
non_alcoholic_light_beer
0
beer_and_ales
0
cordial_and_liqueur
0
distilled_liquor
0
wine
0
gravy_regular
0
gravy_reduced_fat_fat_free
0
sauces_and_condiments_regular
0
sauces_and_condiments_reduced_fat
1
pickled_foods
0
miscellaneous_dessert
0
non_grain_flour_and_similar
0
soup_broth
0
baby_food_dessert
0
miscellaneous_baby_food_mixtures
0
baby_food_grain_mixtures_whole_grain
0
baby_food_grain_mixtures_some_whole_grain
0
hei_2015_total_score
45
energy_1
4137
total_vegetable_servings_in_cup_equivalents
1
greens_and_beans_servings_in_cup_equivalents
0
total_fruit_servings_in_cup_equivalents
1
whole_fruit_servings_in_cup_equivalents
1
whole_grain_servings_in_ounce_equivalents
4
dairy_servings_in_cup_equivalents
3
total_protein_servings_in_ounce_equivalents
20
sea_food_and_plant_protein_servings_in_ounce_equivalents
0
sodium_intake_in_grams
7
refined_grains_in_ounce_equivalents
13
kcal_from_added_sugars
383
hei_2015_component_1_total_vegetables_0_5_
1
hei_2015_component_2_greens_and_beans_0_5_
0
hei_2015_component_3_total_fruit_0_5_
2
hei_2015_component_4_whole_fruit_0_5_
4
hei_2015_component_5_whole_grains_0_10_
6
hei_2015_component_6_dairy_0_10_
6
hei_2015_component_7_total_protein_foods_0_5_
5
hei_2015_component_8_seafood_and_plant_protein_0_5_
0
hei_2015_component_9_fatty_acid_ratio_0_10_
2
hei_2010_component_10_sodium_0_10_
3
hei_2015_component_11_refined_grains_0_10_
4
hei_2015_component_12_added_sugars_0_10_
9
hei_2015_component_13_saturated_fats_0_10_
2
total_vegetable_servings_in_cup_equivalents_per_1000_kcal
0
greens_and_beans_servings_in_cup_equivalents_per_1000_kcal
0
total_fruit_servings_in_cup_equivalents_per_1000_kcal
0
whole_fruit_servings_in_cup_equivalents_per_1000_kcal
0
whole_grain_servings_in_ounce_equivalents_per_1000_kcal
1
dairy_servings_in_cup_equivalents_per_1000_kcal
1
protein_servings_in_ounce_equivalents_per_1000_kcal
5
sea_food_and_plant_protein_servings_in_ounce_equivalents_per_1000_kcal
0
fatty_acid_ratio
1
sodium_intake_in_grams_per_1000_kcal
2
refined_grains_in_ounce_equivalents_per_1000_kcal
3
percent_kcal_from_added_sugars
9
percent_saturated_fatty_acids
14
ahei_10_score_0_110_
40
age
36
bmi
25.2
race
White
hispanic_or_latino_descent
No
current_smoking_status
Non_smoker
alcohol_during_pregnancy
No
alcohol_but_not_during_pregnancy
Yes
recreational_drugs_during_preg
No
general_health_status
Very_good
marital_status
Married
people_living_in_your_household
3
highest_education
Bachelor_degree
annual_gross_household_income
missing
psoriasis
No
lupus
No
rheumatoid_arthritis
No
chronic_intestinal_disease_controls_only
missing
high_blood_pressure
No
autoimmune_disorders_not_ibd
No
all_diasease_names
Asthma
other_diseases
Yes
if_other_disease_please_specify
Asthma_diagnosed_at_2_3_years_old
do_you_have_diarrhea
No
do_you_have_constipation
Yes
current_illness_or_infection
No
age_at_diagnosis
A2
disease_location
L1_ileal
behaviour
B2_stricturing
perianal_disease
No
previous_surgery_for_ibd
Yes
hbi_score
remission
have_you_had_any_recent_flare_ups
No
gestational_week_of_the_flare
missing
ibd_general_name
Anti_TNF
ibd_meds
Yes
probiotics
No
prenatal_vitamins
Yes
vitamin_or_supplement
Yes
vitamin_name
vitamin_supplement_type_B_12
non_ibd_meds
Albuterol
antibiotic_currently
No
antibiotics_in_the_last_year
Yes
antibiotic_name
other
antibiotic_during_pregnancy
Yes
gestational_weeks_of_antibiotics1
1st_trim
special_diets
Low_Fiber_diet_for_several_years
pregnancies
2
children_have_you_given_birth_to
1
miscarriages_or_abortions
0
gestational_age_at_enrollment_weeks
27
fertility_medications
No
intrauterine_insemination
No
in_vitro_fertilization
No
diabetes_pregnancy_related
Yes
hypertension_pregnancy_related
No
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-vaginal