vaginal metagenome
collection_date
2021
env_broad_scale
ENVO_01000219
env_local_scale
UBERON_0019042
env_medium
UBERON_0003133
geo_loc_name
USA: Massachusetts
host
Homo sapiens
lat_lon
42.28603074 N 71.79048774 W
file_name
20009VagBSL2-2-PS-IdxD_S301_L001_R1_001.fastq.gz
sample_type
Vaginal
elevation
0m
env_biome
urban_biome
env_feature
human_associated_habitat
env_material
mucose
study_id_mom
20009
id_merged_simple
20009_BSL
id_merged
20009_BSL1
diet_info
y
run
X
uid
75428
study_arm_x
Arm_2
study_group_x
IBD_nodiet
cd_uc_hc_diagnosis_x
CD
ibd_group_x
IBD
timepoint_x
baseline_29_weeks
timepoint2
BSL
timepoint4
BSL1
study_id_mom1
20009
group
IBD_no_diet
total_grams
2292
energy
2043
total_fat
67
total_carbohydrate
273
total_protein
96
animal_protein
53
vegetable_protein
43
alcohol
0
cholesterol
303
total_saturated_fatty_acids_sfa_
23
total_monounsaturated_fatty_acids_mufa_
24
total_polyunsaturated_fatty_acids_pufa_
13
fructose
19
galactose
1
glucose
20
lactose
9
maltose
5
sucrose
41
starch
137
total_dietary_fiber
26
soluble_dietary_fiber
8
insoluble_dietary_fiber
18
pectins
4
total_vitamin_a_activity_international_units_
5421
beta_carotene_equivalents_derived_from_provitamin_a_carotenoids_
2667
retinol
293
vitamin_d_calciferol_
5
total_alpha_tocopherol_equivalents
18
vitamin_e_total_alpha_tocopherol_
15
beta_tocopherol
0
gamma_tocopherol
8
delta_tocopherol
1
vitamin_k_phylloquinone_
47
vitamin_c_ascorbic_acid_
103
thiamin_vitamin_b1_
2
riboflavin_vitamin_b2_
2
niacin_vitamin_b3_
27
pantothenic_acid
7
vitamin_b_6_pyridoxine_pyridoxyl__pyridoxamine_
2
total_folate
548
vitamin_b_12_cobalamin_
5
calcium
1333
phosphorus
1565
magnesium
320
iron
17
zinc
12
copper
1
selenium
122
sodium
2804
potassium
2803
sfa_4_0_butyric_acid_
0
sfa_6_0_caproic_acid_
0
sfa_8_0_caprylic_acid_
0
sfa_10_0_capric_acid_
0
sfa_12_0_lauric_acid_
1
sfa_14_0_myristic_acid_
2
sfa_16_0_palmitic_acid_
12
sfa_17_0_margaric_acid_
0
sfa_18_0_stearic_acid_
6
sfa_20_0_arachidic_acid_
0
sfa_22_0_behenic_acid_
0
mufa_14_1_myristoleic_acid_
0
mufa_16_1_palmitoleic_acid_
1
mufa_18_1_oleic_acid_
22
mufa_20_1_gadoleic_acid_
0
mufa_22_1_erucic_acid_
0
pufa_18_2_linoleic_acid_
11
pufa_18_3_linolenic_acid_
1
pufa_18_4_parinaric_acid_
0
pufa_20_4_arachidonic_acid_
0
pufa_20_5_eicosapentaenoic_acid_epa_
0
pufa_22_5_docosapentaenoic_acid_dpa_
0
pufa_22_6_docosahexaenoic_acid_dha_
0
tryptophan
1
threonine
4
isoleucine
4
leucine
8
lysine
6
methionine
2
cystine
1
phenylalanine
4
tyrosine
3
valine
5
arginine
5
histidine
2
alanine
4
aspartic_acid
9
glutamic_acid
21
glycine
4
proline
7
serine
5
aspartame
0
saccharin
0
caffeine
35
phytic_acid
1011
oxalic_acid
169
x3_methylhistidine
12
sucrose_polyester
0
ash
18
water
1896
perc_calories_from_fat
29
perc_calories_from_carbohydrate
53
perc_calories_from_protein
18
perc_calories_from_alcohol
0
perc_calories_from_sfa
10
perc_calories_from_mufa
10
perc_calories_from_pufa
6
polyunsaturated_to_saturated_fat_ratio
1
cholesterol_to_saturated_fatty_acid_index
38
total_vitamin_a_activity_retinol_equivalents_
738
trans_18_1_trans_octadecenoic_acid_
2
trans_18_2_trans_octadecadienoic_acid_
0
trans_16_1_trans_hexadecenoic_acid_
0
total_trans_fatty_acids_trans_
2
user_nutrient_1
0
user_nutrient_2
0
user_nutrient_3
0
user_nutrient_4
0
user_nutrient_5
0
user_nutrient_6
0
user_nutrient_7
0
user_nutrient_8
0
user_nutrient_9
0
user_nutrient_10
0
beta_carotene_provitamin_a_carotenoid_
2321
alpha_carotene_provitamin_a_carotenoid_
544
beta_cryptoxanthin_provitamin_a_carotenoid_
149
lutein__zeaxanthin
1435
lycopene
9992
dietary_folate_equivalents
754
natural_folate
254
synthetic_folate
294
total_vitamin_a_activity_retinol_activity_equivalents_
515
energy_kilojoules_
8547
niacin_equivalents
46
total_sugars
95
omega_3_fatty_acids
1
manganese
4
vitamin_e_international_units_
23
natural_alpha_tocopherol_rrr_alpha_tocopherol_or_d_alpha_tocopherol_
13
synthetic_alpha_tocopherol_all_rac_alpha_tocopherol_or_dl_alpha_tocopherol_
4
daidzein
2
genistein
3
glycitein
0
coumestrol
0
biochanin_a
0
formononetin
0
added_sugars_by_available_carbohydrate_
41
acesulfame_potassium
0
sucralose
0
available_carbohydrate
246
glycemic_index_glucose_reference_
59
glycemic_index_bread_reference_
85
glycemic_load_glucose_reference_
145
glycemic_load_bread_reference_
207
choline
371
betaine
122
erythritol
0
inositol
0
isomalt
0
lactitol
0
maltitol
0
mannitol
0
pinitol
0
sorbitol
0
xylitol
0
nitrogen
16
total_conjugated_linoleic_acid_cla_18_2_
0
cla_cis_9_trans_11
0
cla_trans_10_cis_12
0
tagatose
4
vitamin_d2_ergocalciferol_
0
vitamin_d3_cholecalciferol_
5
added_sugars_by_total_sugars_
38
total_grains_ounce_equivalents_
11
whole_grains_ounce_equivalents_
1
refined_grains_ounce_equivalents_
10
pufa_18_3_n_3_alpha_linolenic_acid_ala_
1
solid_fats
32
citrus_juice
0
fruit_juice_excluding_citrus_juice
0
citrus_fruit
0
fruit_excluding_citrus_fruit
0
avocado_and_similar
0
fried_fruits
0
fruit_based_savory_snack
0
dark_green_vegetables
0
deep_yellow_vegetables
0
tomato
2
white_potatoes
0
fried_potatoes
0
other_starchy_vegetables
0
legumes_cooked_dried_beans_
1
other_vegetables
3
fried_vegetables
0
vegetable_juice
0
vegetable_based_savory_snack
0
grains_flour_and_dry_mixes_whole_grain
0
grains_flour_and_dry_mixes_some_whole_grain
0
grains_flour_and_dry_mixes_refined_grain
0
loaf_type_bread_and_plain_rolls_whole_grain
0
loaf_type_bread_and_plain_rolls_some_whole_grain
0
loaf_type_bread_and_plain_rolls_refined_grain
3
other_breads_quick_breads_corn_muffins_tortillas_whole_grain
0
other_breads_quick_breads_corn_muffins_tortillas_some_whole_grain
0
other_breads_quick_breads_corn_muffins_tortillas_refined_grain
4
crackers_whole_grain
0
crackers_some_whole_grain
0
crackers_refined_grain
0
pasta_whole_grain
0
pasta_some_whole_grain
0
pasta_refined_grain
0
ready_to_eat_cereal_not_presweetened_whole_grain
0
ready_to_eat_cereal_not_presweetened_some_whole_grain
0
ready_to_eat_cereal_not_presweetened_refined_grain
0
ready_to_eat_cereal_presweetened_whole_grain
0
ready_to_eat_cereal_presweetened_some_whole_grain
0
ready_to_eat_cereal_presweetened_refined_grain
0
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_whole_grain
0
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_some_whole_grai
0
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_refined_grain
0
snack_bars_whole_grain
0
snack_bars_some_whole_grain
0
snack_bars_refined_grain
0
snack_chips_whole_grain
1
snack_chips_some_whole_grain
0
snack_chips_refined_grain
1
popcorn
0
flavored_popcorn
0
baby_food_grain_mixtures_refined_grain
0
beef
0
lean_beef
2
veal
0
lean_veal
0
lamb
0
lean_lamb
0
fresh_pork
0
lean_fresh_pork
0
cured_pork
0
lean_cured_pork
0
game
0
poultry
0
lean_poultry
2
fried_chicken_commercial_entre_and_fast_food
0
fish_fresh_and_smoked
0
lean_fish_fresh_and_smoked
0
fried_fish_commercial_entre_and_fast_food
0
shellfish
0
fried_shellfish_commercial_entre_and_fast_food
0
cold_cuts_and_sausage
0
lean_cold_cuts_and_sausage
0
organ_meats
0
baby_food_meat_mixtures
0
meat_based_savory_snack
0
eggs
1
egg_substitute
0
nuts_and_seeds
0
nut_and_seed_butters
1
meat_alternatives
0
milk_whole
0
milk_reduced_fat
0
milk_low_fat_and_fat_free
0
milk_nondairy
0
ready_to_drink_flavored_milk_whole
0
ready_to_drink_flavored_milk_reduced_fat
0
ready_to_drink_flavored_milk_low_fat_and_fat_free
0
sweetened_flavored_milk_beverage_powder_with_non_fat_dry_milk
0
artificially_sweetened_flavored_milk_beverage_powder_with_non_fat_dry_milk
0
sweetened_flavored_milk_beverage_powder_without_non_fat_dry_milk
0
artificially_sweetened_flavored_milk_beverage_powder_without_non_fat_dry_milk
0
cheese_full_fat
1
cheese_reduced_fat
0
cheese_low_fat_and_fat_free
0
cheese_nondairy
0
yogurt_sweetened_whole_milk
0
yogurt_sweetened_low_fat
1
yogurt_sweetened_fat_free
0
yogurt_artificially_sweetened_whole_milk
0
yogurt_artificially_sweetened_low_fat
0
yogurt_artificially_sweetened_fat_free
0
yogurt_nondairy
0
frozen_dairy_dessert
0
frozen_nondairy_dessert
0
pudding_and_other_dairy_dessert
0
artificially_sweetened_pudding_and_other_dairy_dessert
0
cream
0
cream_reduced_fat
0
cream_low_fat_and_fat_free
0
cream_nondairy
0
dairy_based_sweetened_meal_replacement_supplement
0
dairy_based_artificially_sweetened_meal_replacement_supplement
0
infant_formula
0
infant_formula_nondairy
0
margarine_regular
0
margarine_reduced_fat
0
oil
0
shortening
0
butter_and_other_animal_fats_regular
0
butter_and_other_animal_fats_reduced_fat
0
salad_dressing_regular
0
salad_dressing_reduced_fat_reduced_calorie_fat_free
0
sugar
0
sugar_substitute
0
syrup_honey_jam_jelly_preserves
0
sauces_sweet_regular
0
sauces_sweet_reduced_fat_reduced_calorie_fat_free
0
chocolate_candy
0
non_chocolate_candy
0
frosting_or_glaze
0
sweetened_soft_drinks
0
artificially_sweetened_soft_drinks
0
unsweetened_soft_drinks
0
sweetened_fruit_drinks
0
artificially_sweetened_fruit_drinks
0
sweetened_tea
0
artificially_sweetened_tea
0
unsweetened_tea
1
sweetened_coffee
0
artificially_sweetened_coffee
0
unsweetened_coffee
0
sweetened_coffee_substitutes
0
artificially_sweetened_coffee_substitutes
0
unsweetened_coffee_substitutes
0
sweetened_water
0
artificially_sweetened_water
0
unsweetened_water
3
nondairy_based_sweetened_meal_replacement_supplement
0
nondairy_based_artificially_sweetened_meal_replacement_supplement
0
nondairy_based_unsweetened_meal_replacement_supplement
0
non_alcoholic_beer
0
non_alcoholic_light_beer
0
beer_and_ales
0
cordial_and_liqueur
0
distilled_liquor
0
wine
0
gravy_regular
0
gravy_reduced_fat_fat_free
0
sauces_and_condiments_regular
0
sauces_and_condiments_reduced_fat
1
pickled_foods
0
miscellaneous_dessert
0
non_grain_flour_and_similar
0
soup_broth
0
baby_food_dessert
0
miscellaneous_baby_food_mixtures
0
baby_food_grain_mixtures_whole_grain
0
baby_food_grain_mixtures_some_whole_grain
0
hei_2015_total_score
62
energy_1
6128
total_vegetable_servings_in_cup_equivalents
9
greens_and_beans_servings_in_cup_equivalents
1
total_fruit_servings_in_cup_equivalents
2
whole_fruit_servings_in_cup_equivalents
1
whole_grain_servings_in_ounce_equivalents
4
dairy_servings_in_cup_equivalents
5
total_protein_servings_in_ounce_equivalents
18
sea_food_and_plant_protein_servings_in_ounce_equivalents
7
sodium_intake_in_grams
8
refined_grains_in_ounce_equivalents
29
kcal_from_added_sugars
456
hei_2015_component_1_total_vegetables_0_5_
5
hei_2015_component_2_greens_and_beans_0_5_
5
hei_2015_component_3_total_fruit_0_5_
2
hei_2015_component_4_whole_fruit_0_5_
2
hei_2015_component_5_whole_grains_0_10_
5
hei_2015_component_6_dairy_0_10_
6
hei_2015_component_7_total_protein_foods_0_5_
5
hei_2015_component_8_seafood_and_plant_protein_0_5_
5
hei_2015_component_9_fatty_acid_ratio_0_10_
3
hei_2010_component_10_sodium_0_10_
7
hei_2015_component_11_refined_grains_0_10_
0
hei_2015_component_12_added_sugars_0_10_
10
hei_2015_component_13_saturated_fats_0_10_
8
total_vegetable_servings_in_cup_equivalents_per_1000_kcal
1
greens_and_beans_servings_in_cup_equivalents_per_1000_kcal
0
total_fruit_servings_in_cup_equivalents_per_1000_kcal
0
whole_fruit_servings_in_cup_equivalents_per_1000_kcal
0
whole_grain_servings_in_ounce_equivalents_per_1000_kcal
1
dairy_servings_in_cup_equivalents_per_1000_kcal
1
protein_servings_in_ounce_equivalents_per_1000_kcal
3
sea_food_and_plant_protein_servings_in_ounce_equivalents_per_1000_kcal
1
fatty_acid_ratio
2
sodium_intake_in_grams_per_1000_kcal
1
refined_grains_in_ounce_equivalents_per_1000_kcal
5
percent_kcal_from_added_sugars
7
percent_saturated_fatty_acids
10
ahei_10_score_0_110_
59
age
33
bmi
26.3
race
White
hispanic_or_latino_descent
No
current_smoking_status
Non_smoker
alcohol_during_pregnancy
No
alcohol_but_not_during_pregnancy
Yes
recreational_drugs_during_preg
No
general_health_status
Very_good
marital_status
Married
people_living_in_your_household
3
highest_education
Graduate_or_professional_degree
annual_gross_household_income
$60000_$79000
psoriasis
No
lupus
No
rheumatoid_arthritis
No
chronic_intestinal_disease_controls_only
missing
high_blood_pressure
No
autoimmune_disorders_not_ibd
No
all_diasease_names
missing
other_diseases
Yes
if_other_disease_please_specify
Crohns_
do_you_have_diarrhea
missing
do_you_have_constipation
missing
current_illness_or_infection
No
age_at_diagnosis
A2
disease_location
L1_ileal
behaviour
missing
perianal_disease
No
previous_surgery_for_ibd
No
hbi_score
mild_disease
have_you_had_any_recent_flare_ups
No
gestational_week_of_the_flare
missing
ibd_general_name
Anti_TNF
ibd_meds
Yes
probiotics
No
prenatal_vitamins
Yes
vitamin_or_supplement
No
vitamin_name
No
non_ibd_meds
missing
antibiotic_currently
No
antibiotics_in_the_last_year
Yes
antibiotic_name
Azithromycin
antibiotic_during_pregnancy
No
gestational_weeks_of_antibiotics1
missing
special_diets
missing
pregnancies
3
children_have_you_given_birth_to
1
miscarriages_or_abortions
1
gestational_age_at_enrollment_weeks
29
fertility_medications
No
intrauterine_insemination
No
in_vitro_fertilization
No
diabetes_pregnancy_related
No
hypertension_pregnancy_related
No
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-vaginal