MIMS Environmental/Metagenome sample from human metagenome
human metagenome
The purpose of this study was to evaluate if systematic differences occur when different commercially available DNA extraction kits are used for whole metagenomic sequencing (WMS) analysis of the human microbiome. Oral, vaginal, and rectal swabs were collected in replicates of four by a healthcare provider from five participants and randomized to one of four DNA extraction kits. Two extraction blanks and three replicate mock community samples were also extracted using each extraction kit. WMS was completed with NovaSeq 6000 for all samples.
collection_date
2019-12
env_broad_scale
human microbiome
env_local_scale
oral | gut | vaginal
env_medium
human oral swab | human rectal swab | human vaginal swab
geo_loc_name
USA: Austin, Texas
host
Homo sapiens
lat_lon
30.2672 N 97.7431 W
host_sex
female
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.human-associated