vaginal metagenome
collection_date
2021
env_broad_scale
ENVO_01000219
env_local_scale
UBERON_0019042
env_medium
UBERON_0003133
geo_loc_name
USA: Massachusetts
host
Homo sapiens
lat_lon
42.28603074 N 71.79048774 W
file_name
10009VagBSL2-2-PS-IdxD_S293_L001_R1_001.fastq.gz
sample_type
Vaginal
elevation
0m
env_biome
urban_biome
env_feature
human_associated_habitat
env_material
mucose
study_id_mom
10009
id_merged_simple
10009_BSL
id_merged
10009_BSL1
diet_info
n
run
X
uid
75259
study_arm_x
Arm_1
study_group_x
IBD_IBD_AID
cd_uc_hc_diagnosis_x
CD
ibd_group_x
IBD
timepoint_x
baseline_29_weeks
timepoint2
BSL
timepoint4
BSL1
study_id_mom1
10009
group
IBD_AID
total_grams
not collected
energy
not collected
total_fat
not collected
total_carbohydrate
not collected
total_protein
not collected
animal_protein
not collected
vegetable_protein
not collected
alcohol
not collected
cholesterol
not collected
total_saturated_fatty_acids_sfa_
not collected
total_monounsaturated_fatty_acids_mufa_
not collected
total_polyunsaturated_fatty_acids_pufa_
not collected
fructose
not collected
galactose
not collected
glucose
not collected
lactose
not collected
maltose
not collected
sucrose
not collected
starch
not collected
total_dietary_fiber
not collected
soluble_dietary_fiber
not collected
insoluble_dietary_fiber
not collected
pectins
not collected
total_vitamin_a_activity_international_units_
not collected
beta_carotene_equivalents_derived_from_provitamin_a_carotenoids_
not collected
retinol
not collected
vitamin_d_calciferol_
not collected
total_alpha_tocopherol_equivalents
not collected
vitamin_e_total_alpha_tocopherol_
not collected
beta_tocopherol
not collected
gamma_tocopherol
not collected
delta_tocopherol
not collected
vitamin_k_phylloquinone_
not collected
vitamin_c_ascorbic_acid_
not collected
thiamin_vitamin_b1_
not collected
riboflavin_vitamin_b2_
not collected
niacin_vitamin_b3_
not collected
pantothenic_acid
not collected
vitamin_b_6_pyridoxine_pyridoxyl__pyridoxamine_
not collected
total_folate
not collected
vitamin_b_12_cobalamin_
not collected
calcium
not collected
phosphorus
not collected
magnesium
not collected
iron
not collected
zinc
not collected
copper
not collected
selenium
not collected
sodium
not collected
potassium
not collected
sfa_4_0_butyric_acid_
not collected
sfa_6_0_caproic_acid_
not collected
sfa_8_0_caprylic_acid_
not collected
sfa_10_0_capric_acid_
not collected
sfa_12_0_lauric_acid_
not collected
sfa_14_0_myristic_acid_
not collected
sfa_16_0_palmitic_acid_
not collected
sfa_17_0_margaric_acid_
not collected
sfa_18_0_stearic_acid_
not collected
sfa_20_0_arachidic_acid_
not collected
sfa_22_0_behenic_acid_
not collected
mufa_14_1_myristoleic_acid_
not collected
mufa_16_1_palmitoleic_acid_
not collected
mufa_18_1_oleic_acid_
not collected
mufa_20_1_gadoleic_acid_
not collected
mufa_22_1_erucic_acid_
not collected
pufa_18_2_linoleic_acid_
not collected
pufa_18_3_linolenic_acid_
not collected
pufa_18_4_parinaric_acid_
not collected
pufa_20_4_arachidonic_acid_
not collected
pufa_20_5_eicosapentaenoic_acid_epa_
not collected
pufa_22_5_docosapentaenoic_acid_dpa_
not collected
pufa_22_6_docosahexaenoic_acid_dha_
not collected
tryptophan
not collected
threonine
not collected
isoleucine
not collected
leucine
not collected
lysine
not collected
methionine
not collected
cystine
not collected
phenylalanine
not collected
tyrosine
not collected
valine
not collected
arginine
not collected
histidine
not collected
alanine
not collected
aspartic_acid
not collected
glutamic_acid
not collected
glycine
not collected
proline
not collected
serine
not collected
aspartame
not collected
saccharin
not collected
caffeine
not collected
phytic_acid
not collected
oxalic_acid
not collected
x3_methylhistidine
not collected
sucrose_polyester
not collected
ash
not collected
water
not collected
perc_calories_from_fat
not collected
perc_calories_from_carbohydrate
not collected
perc_calories_from_protein
not collected
perc_calories_from_alcohol
not collected
perc_calories_from_sfa
not collected
perc_calories_from_mufa
not collected
perc_calories_from_pufa
not collected
polyunsaturated_to_saturated_fat_ratio
not collected
cholesterol_to_saturated_fatty_acid_index
not collected
total_vitamin_a_activity_retinol_equivalents_
not collected
trans_18_1_trans_octadecenoic_acid_
not collected
trans_18_2_trans_octadecadienoic_acid_
not collected
trans_16_1_trans_hexadecenoic_acid_
not collected
total_trans_fatty_acids_trans_
not collected
user_nutrient_1
not collected
user_nutrient_2
not collected
user_nutrient_3
not collected
user_nutrient_4
not collected
user_nutrient_5
not collected
user_nutrient_6
not collected
user_nutrient_7
not collected
user_nutrient_8
not collected
user_nutrient_9
not collected
user_nutrient_10
not collected
beta_carotene_provitamin_a_carotenoid_
not collected
alpha_carotene_provitamin_a_carotenoid_
not collected
beta_cryptoxanthin_provitamin_a_carotenoid_
not collected
lutein__zeaxanthin
not collected
lycopene
not collected
dietary_folate_equivalents
not collected
natural_folate
not collected
synthetic_folate
not collected
total_vitamin_a_activity_retinol_activity_equivalents_
not collected
energy_kilojoules_
not collected
niacin_equivalents
not collected
total_sugars
not collected
omega_3_fatty_acids
not collected
manganese
not collected
vitamin_e_international_units_
not collected
natural_alpha_tocopherol_rrr_alpha_tocopherol_or_d_alpha_tocopherol_
not collected
synthetic_alpha_tocopherol_all_rac_alpha_tocopherol_or_dl_alpha_tocopherol_
not collected
daidzein
not collected
genistein
not collected
glycitein
not collected
coumestrol
not collected
biochanin_a
not collected
formononetin
not collected
added_sugars_by_available_carbohydrate_
not collected
acesulfame_potassium
not collected
sucralose
not collected
available_carbohydrate
not collected
glycemic_index_glucose_reference_
not collected
glycemic_index_bread_reference_
not collected
glycemic_load_glucose_reference_
not collected
glycemic_load_bread_reference_
not collected
choline
not collected
betaine
not collected
erythritol
not collected
inositol
not collected
isomalt
not collected
lactitol
not collected
maltitol
not collected
mannitol
not collected
pinitol
not collected
sorbitol
not collected
xylitol
not collected
nitrogen
not collected
total_conjugated_linoleic_acid_cla_18_2_
not collected
cla_cis_9_trans_11
not collected
cla_trans_10_cis_12
not collected
tagatose
not collected
vitamin_d2_ergocalciferol_
not collected
vitamin_d3_cholecalciferol_
not collected
added_sugars_by_total_sugars_
not collected
total_grains_ounce_equivalents_
not collected
whole_grains_ounce_equivalents_
not collected
refined_grains_ounce_equivalents_
not collected
pufa_18_3_n_3_alpha_linolenic_acid_ala_
not collected
solid_fats
not collected
citrus_juice
not collected
fruit_juice_excluding_citrus_juice
not collected
citrus_fruit
not collected
fruit_excluding_citrus_fruit
not collected
avocado_and_similar
not collected
fried_fruits
not collected
fruit_based_savory_snack
not collected
dark_green_vegetables
not collected
deep_yellow_vegetables
not collected
tomato
not collected
white_potatoes
not collected
fried_potatoes
not collected
other_starchy_vegetables
not collected
legumes_cooked_dried_beans_
not collected
other_vegetables
not collected
fried_vegetables
not collected
vegetable_juice
not collected
vegetable_based_savory_snack
not collected
grains_flour_and_dry_mixes_whole_grain
not collected
grains_flour_and_dry_mixes_some_whole_grain
not collected
grains_flour_and_dry_mixes_refined_grain
not collected
loaf_type_bread_and_plain_rolls_whole_grain
not collected
loaf_type_bread_and_plain_rolls_some_whole_grain
not collected
loaf_type_bread_and_plain_rolls_refined_grain
not collected
other_breads_quick_breads_corn_muffins_tortillas_whole_grain
not collected
other_breads_quick_breads_corn_muffins_tortillas_some_whole_grain
not collected
other_breads_quick_breads_corn_muffins_tortillas_refined_grain
not collected
crackers_whole_grain
not collected
crackers_some_whole_grain
not collected
crackers_refined_grain
not collected
pasta_whole_grain
not collected
pasta_some_whole_grain
not collected
pasta_refined_grain
not collected
ready_to_eat_cereal_not_presweetened_whole_grain
not collected
ready_to_eat_cereal_not_presweetened_some_whole_grain
not collected
ready_to_eat_cereal_not_presweetened_refined_grain
not collected
ready_to_eat_cereal_presweetened_whole_grain
not collected
ready_to_eat_cereal_presweetened_some_whole_grain
not collected
ready_to_eat_cereal_presweetened_refined_grain
not collected
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_whole_grain
not collected
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_some_whole_grai
not collected
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_refined_grain
not collected
snack_bars_whole_grain
not collected
snack_bars_some_whole_grain
not collected
snack_bars_refined_grain
not collected
snack_chips_whole_grain
not collected
snack_chips_some_whole_grain
not collected
snack_chips_refined_grain
not collected
popcorn
not collected
flavored_popcorn
not collected
baby_food_grain_mixtures_refined_grain
not collected
beef
not collected
lean_beef
not collected
veal
not collected
lean_veal
not collected
lamb
not collected
lean_lamb
not collected
fresh_pork
not collected
lean_fresh_pork
not collected
cured_pork
not collected
lean_cured_pork
not collected
game
not collected
poultry
not collected
lean_poultry
not collected
fried_chicken_commercial_entre_and_fast_food
not collected
fish_fresh_and_smoked
not collected
lean_fish_fresh_and_smoked
not collected
fried_fish_commercial_entre_and_fast_food
not collected
shellfish
not collected
fried_shellfish_commercial_entre_and_fast_food
not collected
cold_cuts_and_sausage
not collected
lean_cold_cuts_and_sausage
not collected
organ_meats
not collected
baby_food_meat_mixtures
not collected
meat_based_savory_snack
not collected
eggs
not collected
egg_substitute
not collected
nuts_and_seeds
not collected
nut_and_seed_butters
not collected
meat_alternatives
not collected
milk_whole
not collected
milk_reduced_fat
not collected
milk_low_fat_and_fat_free
not collected
milk_nondairy
not collected
ready_to_drink_flavored_milk_whole
not collected
ready_to_drink_flavored_milk_reduced_fat
not collected
ready_to_drink_flavored_milk_low_fat_and_fat_free
not collected
sweetened_flavored_milk_beverage_powder_with_non_fat_dry_milk
not collected
artificially_sweetened_flavored_milk_beverage_powder_with_non_fat_dry_milk
not collected
sweetened_flavored_milk_beverage_powder_without_non_fat_dry_milk
not collected
artificially_sweetened_flavored_milk_beverage_powder_without_non_fat_dry_milk
not collected
cheese_full_fat
not collected
cheese_reduced_fat
not collected
cheese_low_fat_and_fat_free
not collected
cheese_nondairy
not collected
yogurt_sweetened_whole_milk
not collected
yogurt_sweetened_low_fat
not collected
yogurt_sweetened_fat_free
not collected
yogurt_artificially_sweetened_whole_milk
not collected
yogurt_artificially_sweetened_low_fat
not collected
yogurt_artificially_sweetened_fat_free
not collected
yogurt_nondairy
not collected
frozen_dairy_dessert
not collected
frozen_nondairy_dessert
not collected
pudding_and_other_dairy_dessert
not collected
artificially_sweetened_pudding_and_other_dairy_dessert
not collected
cream
not collected
cream_reduced_fat
not collected
cream_low_fat_and_fat_free
not collected
cream_nondairy
not collected
dairy_based_sweetened_meal_replacement_supplement
not collected
dairy_based_artificially_sweetened_meal_replacement_supplement
not collected
infant_formula
not collected
infant_formula_nondairy
not collected
margarine_regular
not collected
margarine_reduced_fat
not collected
oil
not collected
shortening
not collected
butter_and_other_animal_fats_regular
not collected
butter_and_other_animal_fats_reduced_fat
not collected
salad_dressing_regular
not collected
salad_dressing_reduced_fat_reduced_calorie_fat_free
not collected
sugar
not collected
sugar_substitute
not collected
syrup_honey_jam_jelly_preserves
not collected
sauces_sweet_regular
not collected
sauces_sweet_reduced_fat_reduced_calorie_fat_free
not collected
chocolate_candy
not collected
non_chocolate_candy
not collected
frosting_or_glaze
not collected
sweetened_soft_drinks
not collected
artificially_sweetened_soft_drinks
not collected
unsweetened_soft_drinks
not collected
sweetened_fruit_drinks
not collected
artificially_sweetened_fruit_drinks
not collected
sweetened_tea
not collected
artificially_sweetened_tea
not collected
unsweetened_tea
not collected
sweetened_coffee
not collected
artificially_sweetened_coffee
not collected
unsweetened_coffee
not collected
sweetened_coffee_substitutes
not collected
artificially_sweetened_coffee_substitutes
not collected
unsweetened_coffee_substitutes
not collected
sweetened_water
not collected
artificially_sweetened_water
not collected
unsweetened_water
not collected
nondairy_based_sweetened_meal_replacement_supplement
not collected
nondairy_based_artificially_sweetened_meal_replacement_supplement
not collected
nondairy_based_unsweetened_meal_replacement_supplement
not collected
non_alcoholic_beer
not collected
non_alcoholic_light_beer
not collected
beer_and_ales
not collected
cordial_and_liqueur
not collected
distilled_liquor
not collected
wine
not collected
gravy_regular
not collected
gravy_reduced_fat_fat_free
not collected
sauces_and_condiments_regular
not collected
sauces_and_condiments_reduced_fat
not collected
pickled_foods
not collected
miscellaneous_dessert
not collected
non_grain_flour_and_similar
not collected
soup_broth
not collected
baby_food_dessert
not collected
miscellaneous_baby_food_mixtures
not collected
baby_food_grain_mixtures_whole_grain
not collected
baby_food_grain_mixtures_some_whole_grain
not collected
hei_2015_total_score
not collected
energy_1
not collected
total_vegetable_servings_in_cup_equivalents
not collected
greens_and_beans_servings_in_cup_equivalents
not collected
total_fruit_servings_in_cup_equivalents
not collected
whole_fruit_servings_in_cup_equivalents
not collected
whole_grain_servings_in_ounce_equivalents
not collected
dairy_servings_in_cup_equivalents
not collected
total_protein_servings_in_ounce_equivalents
not collected
sea_food_and_plant_protein_servings_in_ounce_equivalents
not collected
sodium_intake_in_grams
not collected
refined_grains_in_ounce_equivalents
not collected
kcal_from_added_sugars
not collected
hei_2015_component_1_total_vegetables_0_5_
not collected
hei_2015_component_2_greens_and_beans_0_5_
not collected
hei_2015_component_3_total_fruit_0_5_
not collected
hei_2015_component_4_whole_fruit_0_5_
not collected
hei_2015_component_5_whole_grains_0_10_
not collected
hei_2015_component_6_dairy_0_10_
not collected
hei_2015_component_7_total_protein_foods_0_5_
not collected
hei_2015_component_8_seafood_and_plant_protein_0_5_
not collected
hei_2015_component_9_fatty_acid_ratio_0_10_
not collected
hei_2010_component_10_sodium_0_10_
not collected
hei_2015_component_11_refined_grains_0_10_
not collected
hei_2015_component_12_added_sugars_0_10_
not collected
hei_2015_component_13_saturated_fats_0_10_
not collected
total_vegetable_servings_in_cup_equivalents_per_1000_kcal
not collected
greens_and_beans_servings_in_cup_equivalents_per_1000_kcal
not collected
total_fruit_servings_in_cup_equivalents_per_1000_kcal
not collected
whole_fruit_servings_in_cup_equivalents_per_1000_kcal
not collected
whole_grain_servings_in_ounce_equivalents_per_1000_kcal
not collected
dairy_servings_in_cup_equivalents_per_1000_kcal
not collected
protein_servings_in_ounce_equivalents_per_1000_kcal
not collected
sea_food_and_plant_protein_servings_in_ounce_equivalents_per_1000_kcal
not collected
fatty_acid_ratio
not collected
sodium_intake_in_grams_per_1000_kcal
not collected
refined_grains_in_ounce_equivalents_per_1000_kcal
not collected
percent_kcal_from_added_sugars
not collected
percent_saturated_fatty_acids
not collected
ahei_10_score_0_110_
not collected
age
35
bmi
27.5
race
White
hispanic_or_latino_descent
No
current_smoking_status
Non_smoker
alcohol_during_pregnancy
No
alcohol_but_not_during_pregnancy
Yes
recreational_drugs_during_preg
No
general_health_status
Very_good
marital_status
Married
people_living_in_your_household
3
highest_education
Bachelor_degree
annual_gross_household_income
not collected
psoriasis
No
lupus
No
rheumatoid_arthritis
No
chronic_intestinal_disease_controls_only
not collected
high_blood_pressure
No
autoimmune_disorders_not_ibd
Yes
all_diasease_names
not collected
other_diseases
No
if_other_disease_please_specify
not collected
do_you_have_diarrhea
not collected
do_you_have_constipation
not collected
current_illness_or_infection
No
age_at_diagnosis
A2
disease_location
L3_ileocolonic
behaviour
B2_stricturing
perianal_disease
No
previous_surgery_for_ibd
Yes
hbi_score
remission
have_you_had_any_recent_flare_ups
No
gestational_week_of_the_flare
not collected
ibd_general_name
No
ibd_meds
No
probiotics
No
prenatal_vitamins
Yes
vitamin_or_supplement
Yes
vitamin_name
vitamin_supplement_type_B_12_vitamin_supplement_type_Iron
non_ibd_meds
not collected
antibiotic_currently
No
antibiotics_in_the_last_year
No
antibiotic_name
No
antibiotic_during_pregnancy
No
gestational_weeks_of_antibiotics1
not collected
special_diets
not collected
pregnancies
2
children_have_you_given_birth_to
1
miscarriages_or_abortions
0
gestational_age_at_enrollment_weeks
27
fertility_medications
No
intrauterine_insemination
No
in_vitro_fertilization
No
diabetes_pregnancy_related
No
hypertension_pregnancy_related
No
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-vaginal