vaginal metagenome
collection_date
2021
env_broad_scale
ENVO_01000219
env_local_scale
UBERON_0019042
env_medium
UBERON_0003133
geo_loc_name
USA: Massachusetts
host
Homo sapiens
lat_lon
42.28603074 N 71.79048774 W
file_name
30012VagBSL1-2-PS-IdxD_S311_L001_R1_001.fastq.gz
sample_type
Vaginal
elevation
0m
env_biome
urban_biome
env_feature
human_associated_habitat
env_material
mucose
study_id_mom
30012
id_merged_simple
30012_BSL
id_merged
30012_BSL1
diet_info
y
run
X
uid
68776
study_arm_x
Arm_3
study_group_x
Control_nodiet
cd_uc_hc_diagnosis_x
HC
ibd_group_x
HC
timepoint_x
baseline_27_weeks
timepoint2
BSL
timepoint4
BSL1
study_id_mom1
30012
group
HC_no_diet
total_grams
3985
energy
3564
total_fat
137
total_carbohydrate
458
total_protein
134
animal_protein
90
vegetable_protein
43
alcohol
0
cholesterol
540
total_saturated_fatty_acids_sfa_
53
total_monounsaturated_fatty_acids_mufa_
48
total_polyunsaturated_fatty_acids_pufa_
24
fructose
49
galactose
2
glucose
56
lactose
16
maltose
8
sucrose
76
starch
182
total_dietary_fiber
28
soluble_dietary_fiber
9
insoluble_dietary_fiber
19
pectins
4
total_vitamin_a_activity_international_units_
22213
beta_carotene_equivalents_derived_from_provitamin_a_carotenoids_
11303
retinol
1012
vitamin_d_calciferol_
8
total_alpha_tocopherol_equivalents
13
vitamin_e_total_alpha_tocopherol_
10
beta_tocopherol
1
gamma_tocopherol
20
delta_tocopherol
5
vitamin_k_phylloquinone_
191
vitamin_c_ascorbic_acid_
145
thiamin_vitamin_b1_
3
riboflavin_vitamin_b2_
3
niacin_vitamin_b3_
41
pantothenic_acid
8
vitamin_b_6_pyridoxine_pyridoxyl__pyridoxamine_
3
total_folate
574
vitamin_b_12_cobalamin_
5
calcium
1967
phosphorus
2097
magnesium
383
iron
23
zinc
17
copper
2
selenium
201
sodium
6728
potassium
3524
sfa_4_0_butyric_acid_
1
sfa_6_0_caproic_acid_
1
sfa_8_0_caprylic_acid_
1
sfa_10_0_capric_acid_
1
sfa_12_0_lauric_acid_
1
sfa_14_0_myristic_acid_
5
sfa_16_0_palmitic_acid_
28
sfa_17_0_margaric_acid_
0
sfa_18_0_stearic_acid_
13
sfa_20_0_arachidic_acid_
0
sfa_22_0_behenic_acid_
0
mufa_14_1_myristoleic_acid_
0
mufa_16_1_palmitoleic_acid_
2
mufa_18_1_oleic_acid_
44
mufa_20_1_gadoleic_acid_
1
mufa_22_1_erucic_acid_
0
pufa_18_2_linoleic_acid_
21
pufa_18_3_linolenic_acid_
2
pufa_18_4_parinaric_acid_
0
pufa_20_4_arachidonic_acid_
0
pufa_20_5_eicosapentaenoic_acid_epa_
0
pufa_22_5_docosapentaenoic_acid_dpa_
0
pufa_22_6_docosahexaenoic_acid_dha_
0
tryptophan
2
threonine
5
isoleucine
6
leucine
10
lysine
9
methionine
3
cystine
2
phenylalanine
6
tyrosine
5
valine
7
arginine
7
histidine
3
alanine
6
aspartic_acid
11
glutamic_acid
27
glycine
5
proline
10
serine
6
aspartame
0
saccharin
0
caffeine
68
phytic_acid
792
oxalic_acid
202
x3_methylhistidine
25
sucrose_polyester
0
ash
33
water
3256
perc_calories_from_fat
32
perc_calories_from_carbohydrate
52
perc_calories_from_protein
15
perc_calories_from_alcohol
0
perc_calories_from_sfa
13
perc_calories_from_mufa
11
perc_calories_from_pufa
6
polyunsaturated_to_saturated_fat_ratio
0
cholesterol_to_saturated_fatty_acid_index
81
total_vitamin_a_activity_retinol_equivalents_
2896
trans_18_1_trans_octadecenoic_acid_
6
trans_18_2_trans_octadecadienoic_acid_
1
trans_16_1_trans_hexadecenoic_acid_
0
total_trans_fatty_acids_trans_
6
user_nutrient_1
0
user_nutrient_2
0
user_nutrient_3
0
user_nutrient_4
0
user_nutrient_5
0
user_nutrient_6
0
user_nutrient_7
0
user_nutrient_8
0
user_nutrient_9
0
user_nutrient_10
0
beta_carotene_provitamin_a_carotenoid_
9299
alpha_carotene_provitamin_a_carotenoid_
3776
beta_cryptoxanthin_provitamin_a_carotenoid_
232
lutein__zeaxanthin
2599
lycopene
1761
dietary_folate_equivalents
778
natural_folate
284
synthetic_folate
291
total_vitamin_a_activity_retinol_activity_equivalents_
1954
energy_kilojoules_
14913
niacin_equivalents
66
total_sugars
208
omega_3_fatty_acids
2
manganese
4
vitamin_e_international_units_
15
natural_alpha_tocopherol_rrr_alpha_tocopherol_or_d_alpha_tocopherol_
10
synthetic_alpha_tocopherol_all_rac_alpha_tocopherol_or_dl_alpha_tocopherol_
0
daidzein
0
genistein
0
glycitein
0
coumestrol
0
biochanin_a
0
formononetin
0
added_sugars_by_available_carbohydrate_
161
acesulfame_potassium
0
sucralose
0
available_carbohydrate
429
glycemic_index_glucose_reference_
59
glycemic_index_bread_reference_
84
glycemic_load_glucose_reference_
254
glycemic_load_bread_reference_
364
choline
520
betaine
314
erythritol
0
inositol
0
isomalt
0
lactitol
0
maltitol
0
mannitol
1
pinitol
0
sorbitol
1
xylitol
0
nitrogen
22
total_conjugated_linoleic_acid_cla_18_2_
0
cla_cis_9_trans_11
0
cla_trans_10_cis_12
0
tagatose
3
vitamin_d2_ergocalciferol_
0
vitamin_d3_cholecalciferol_
8
added_sugars_by_total_sugars_
144
total_grains_ounce_equivalents_
12
whole_grains_ounce_equivalents_
1
refined_grains_ounce_equivalents_
11
pufa_18_3_n_3_alpha_linolenic_acid_ala_
2
solid_fats
90
citrus_juice
0
fruit_juice_excluding_citrus_juice
1
citrus_fruit
0
fruit_excluding_citrus_fruit
1
avocado_and_similar
0
fried_fruits
0
fruit_based_savory_snack
0
dark_green_vegetables
1
deep_yellow_vegetables
1
tomato
0
white_potatoes
1
fried_potatoes
1
other_starchy_vegetables
0
legumes_cooked_dried_beans_
0
other_vegetables
1
fried_vegetables
0
vegetable_juice
0
vegetable_based_savory_snack
0
grains_flour_and_dry_mixes_whole_grain
0
grains_flour_and_dry_mixes_some_whole_grain
0
grains_flour_and_dry_mixes_refined_grain
0
loaf_type_bread_and_plain_rolls_whole_grain
0
loaf_type_bread_and_plain_rolls_some_whole_grain
0
loaf_type_bread_and_plain_rolls_refined_grain
6
other_breads_quick_breads_corn_muffins_tortillas_whole_grain
0
other_breads_quick_breads_corn_muffins_tortillas_some_whole_grain
0
other_breads_quick_breads_corn_muffins_tortillas_refined_grain
1
crackers_whole_grain
0
crackers_some_whole_grain
0
crackers_refined_grain
0
pasta_whole_grain
0
pasta_some_whole_grain
0
pasta_refined_grain
2
ready_to_eat_cereal_not_presweetened_whole_grain
0
ready_to_eat_cereal_not_presweetened_some_whole_grain
0
ready_to_eat_cereal_not_presweetened_refined_grain
0
ready_to_eat_cereal_presweetened_whole_grain
0
ready_to_eat_cereal_presweetened_some_whole_grain
0
ready_to_eat_cereal_presweetened_refined_grain
0
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_whole_grain
0
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_some_whole_grai
0
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_refined_grain
2
snack_bars_whole_grain
1
snack_bars_some_whole_grain
0
snack_bars_refined_grain
0
snack_chips_whole_grain
0
snack_chips_some_whole_grain
0
snack_chips_refined_grain
0
popcorn
0
flavored_popcorn
0
baby_food_grain_mixtures_refined_grain
0
beef
1
lean_beef
0
veal
0
lean_veal
0
lamb
0
lean_lamb
0
fresh_pork
0
lean_fresh_pork
0
cured_pork
0
lean_cured_pork
0
game
0
poultry
0
lean_poultry
4
fried_chicken_commercial_entre_and_fast_food
0
fish_fresh_and_smoked
0
lean_fish_fresh_and_smoked
0
fried_fish_commercial_entre_and_fast_food
0
shellfish
0
fried_shellfish_commercial_entre_and_fast_food
0
cold_cuts_and_sausage
0
lean_cold_cuts_and_sausage
2
organ_meats
0
baby_food_meat_mixtures
0
meat_based_savory_snack
0
eggs
1
egg_substitute
0
nuts_and_seeds
0
nut_and_seed_butters
1
meat_alternatives
0
milk_whole
0
milk_reduced_fat
0
milk_low_fat_and_fat_free
0
milk_nondairy
0
ready_to_drink_flavored_milk_whole
0
ready_to_drink_flavored_milk_reduced_fat
0
ready_to_drink_flavored_milk_low_fat_and_fat_free
0
sweetened_flavored_milk_beverage_powder_with_non_fat_dry_milk
0
artificially_sweetened_flavored_milk_beverage_powder_with_non_fat_dry_milk
0
sweetened_flavored_milk_beverage_powder_without_non_fat_dry_milk
0
artificially_sweetened_flavored_milk_beverage_powder_without_non_fat_dry_milk
0
cheese_full_fat
2
cheese_reduced_fat
0
cheese_low_fat_and_fat_free
0
cheese_nondairy
0
yogurt_sweetened_whole_milk
0
yogurt_sweetened_low_fat
0
yogurt_sweetened_fat_free
0
yogurt_artificially_sweetened_whole_milk
0
yogurt_artificially_sweetened_low_fat
0
yogurt_artificially_sweetened_fat_free
0
yogurt_nondairy
0
frozen_dairy_dessert
1
frozen_nondairy_dessert
0
pudding_and_other_dairy_dessert
0
artificially_sweetened_pudding_and_other_dairy_dessert
0
cream
0
cream_reduced_fat
1
cream_low_fat_and_fat_free
0
cream_nondairy
1
dairy_based_sweetened_meal_replacement_supplement
0
dairy_based_artificially_sweetened_meal_replacement_supplement
0
infant_formula
0
infant_formula_nondairy
0
margarine_regular
0
margarine_reduced_fat
2
oil
0
shortening
0
butter_and_other_animal_fats_regular
1
butter_and_other_animal_fats_reduced_fat
0
salad_dressing_regular
0
salad_dressing_reduced_fat_reduced_calorie_fat_free
1
sugar
2
sugar_substitute
0
syrup_honey_jam_jelly_preserves
1
sauces_sweet_regular
0
sauces_sweet_reduced_fat_reduced_calorie_fat_free
0
chocolate_candy
0
non_chocolate_candy
0
frosting_or_glaze
0
sweetened_soft_drinks
0
artificially_sweetened_soft_drinks
0
unsweetened_soft_drinks
0
sweetened_fruit_drinks
2
artificially_sweetened_fruit_drinks
0
sweetened_tea
0
artificially_sweetened_tea
0
unsweetened_tea
0
sweetened_coffee
0
artificially_sweetened_coffee
0
unsweetened_coffee
1
sweetened_coffee_substitutes
0
artificially_sweetened_coffee_substitutes
0
unsweetened_coffee_substitutes
0
sweetened_water
0
artificially_sweetened_water
0
unsweetened_water
5
nondairy_based_sweetened_meal_replacement_supplement
0
nondairy_based_artificially_sweetened_meal_replacement_supplement
0
nondairy_based_unsweetened_meal_replacement_supplement
0
non_alcoholic_beer
0
non_alcoholic_light_beer
0
beer_and_ales
0
cordial_and_liqueur
0
distilled_liquor
0
wine
0
gravy_regular
1
gravy_reduced_fat_fat_free
0
sauces_and_condiments_regular
0
sauces_and_condiments_reduced_fat
1
pickled_foods
0
miscellaneous_dessert
0
non_grain_flour_and_similar
0
soup_broth
0
baby_food_dessert
0
miscellaneous_baby_food_mixtures
0
baby_food_grain_mixtures_whole_grain
0
baby_food_grain_mixtures_some_whole_grain
0
hei_2015_total_score
39
energy_1
10693
total_vegetable_servings_in_cup_equivalents
9
greens_and_beans_servings_in_cup_equivalents
2
total_fruit_servings_in_cup_equivalents
2
whole_fruit_servings_in_cup_equivalents
1
whole_grain_servings_in_ounce_equivalents
2
dairy_servings_in_cup_equivalents
9
total_protein_servings_in_ounce_equivalents
28
sea_food_and_plant_protein_servings_in_ounce_equivalents
3
sodium_intake_in_grams
20
refined_grains_in_ounce_equivalents
34
kcal_from_added_sugars
1732
hei_2015_component_1_total_vegetables_0_5_
4
hei_2015_component_2_greens_and_beans_0_5_
4
hei_2015_component_3_total_fruit_0_5_
1
hei_2015_component_4_whole_fruit_0_5_
1
hei_2015_component_5_whole_grains_0_10_
1
hei_2015_component_6_dairy_0_10_
6
hei_2015_component_7_total_protein_foods_0_5_
5
hei_2015_component_8_seafood_and_plant_protein_0_5_
2
hei_2015_component_9_fatty_acid_ratio_0_10_
1
hei_2010_component_10_sodium_0_10_
1
hei_2015_component_11_refined_grains_0_10_
4
hei_2015_component_12_added_sugars_0_10_
5
hei_2015_component_13_saturated_fats_0_10_
3
total_vegetable_servings_in_cup_equivalents_per_1000_kcal
1
greens_and_beans_servings_in_cup_equivalents_per_1000_kcal
0
total_fruit_servings_in_cup_equivalents_per_1000_kcal
0
whole_fruit_servings_in_cup_equivalents_per_1000_kcal
0
whole_grain_servings_in_ounce_equivalents_per_1000_kcal
0
dairy_servings_in_cup_equivalents_per_1000_kcal
1
protein_servings_in_ounce_equivalents_per_1000_kcal
3
sea_food_and_plant_protein_servings_in_ounce_equivalents_per_1000_kcal
0
fatty_acid_ratio
1
sodium_intake_in_grams_per_1000_kcal
2
refined_grains_in_ounce_equivalents_per_1000_kcal
3
percent_kcal_from_added_sugars
16
percent_saturated_fatty_acids
13
ahei_10_score_0_110_
50
age
39
bmi
26.3
race
White
hispanic_or_latino_descent
No
current_smoking_status
Ex_smoker
alcohol_during_pregnancy
No
alcohol_but_not_during_pregnancy
Yes
recreational_drugs_during_preg
No
general_health_status
Fair
marital_status
Married
people_living_in_your_household
11
highest_education
Some_college
annual_gross_household_income
missing
psoriasis
No
lupus
No
rheumatoid_arthritis
No
chronic_intestinal_disease_controls_only
No
high_blood_pressure
No
autoimmune_disorders_not_ibd
No
all_diasease_names
missing
other_diseases
No
if_other_disease_please_specify
missing
do_you_have_diarrhea
No
do_you_have_constipation
No
current_illness_or_infection
No
age_at_diagnosis
missing
disease_location
missing
behaviour
missing
perianal_disease
missing
previous_surgery_for_ibd
missing
hbi_score
missing
have_you_had_any_recent_flare_ups
missing
gestational_week_of_the_flare
missing
ibd_general_name
No
ibd_meds
No
probiotics
No
prenatal_vitamins
Yes
vitamin_or_supplement
Yes
vitamin_name
vitamin_supplement_type_Iron
non_ibd_meds
Lovenox
antibiotic_currently
No
antibiotics_in_the_last_year
Yes
antibiotic_name
Amoxicillin
antibiotic_during_pregnancy
Yes
gestational_weeks_of_antibiotics1
2nd_trim
special_diets
missing
pregnancies
9
children_have_you_given_birth_to
7
miscarriages_or_abortions
1
gestational_age_at_enrollment_weeks
23
fertility_medications
No
intrauterine_insemination
No
in_vitro_fertilization
No
diabetes_pregnancy_related
missing
hypertension_pregnancy_related
No
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-vaginal