Jr-16oct17-179
Opitutia bacterium
Jr-16oct17-179
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
2022-11-29
External Id
SAMEA112172715
INSDC center alias
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public
2022-11-29T20:21:13Z
INSDC last update
2022-11-29T20:21:13Z
INSDC status
public
Submitter Id
Jr-16oct17-179
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
MEGAHIT
binning parameters
coverage and kmer
binning software
MetaBAT2
broad-scale environmental context
freshwater ecosystem
collection date
2017-10-16
completeness score
90.54
completeness software
checkm
contamination score
0.68
environmental medium
freshwater lake biome
geographic location (country and/or sea)
Czech Republic
geographic location (latitude)
48.6189
geographic location (longitude)
14.6731
isolation_source
lake water
local environmental context
freshwater lake biome
metagenomic source
lake water metagenome
project name
PRJNA429145
sample derived from
ERS14264363
sample name
Jr-16oct17-179
taxonomic identity marker
multi-marker approach