Rickettsia helvetica Ir_f1 MAG
Rickettsia helvetica
Rickettsia helvetica MAG from a Ixodes ricinus tick metagenome
ENA first public
2024-07-08
External Id
SAMEA114806799
INSDC center name
National Institute of Public Health and Environment (RIVM)
INSDC last update
2023-12-08T14:05:32Z
INSDC status
public
Submitter Id
Ir_f1_Rh
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
Flye 2.9-b1768 , Polypolish v0.5.0
binning parameters
N/A
binning software
Tick holobiome metagenomic reads were filtered using available Ricketssia genomes, mapped reads were then assembled
broad-scale environmental context
forest biome
collection date
2020-01-09
completeness score
99.53
completeness software
checkm
contamination score
0
environmental medium
Arthropoda
geographic location (country and/or sea)
Netherlands
geographic location (latitude)
51.9769444
geographic location (longitude)
5.69922
isolation_source
Ixodes ricinus
local environmental context
planted forest
metagenomic source
tick metagenome
project name
Comparative genomics of pathogenic Rickettsial symbionts in ticks
sample derived from
ERS17138680
sample name
Ir_f1_Rh
scientific_name
Rickettsia helvetica
taxonomic identity marker
Whole genome