vaginal metagenome
collection_date
2021
env_broad_scale
ENVO_01000219
env_local_scale
UBERON_0019042
env_medium
UBERON_0003133
geo_loc_name
USA: Massachusetts
host
Homo sapiens
lat_lon
42.28603074 N 71.79048774 W
file_name
10011UVagBSL2-2-PS-IdxD_S327_L001_R1_001.fastq.gz
sample_type
Vaginal
elevation
0m
env_biome
urban_biome
env_feature
human_associated_habitat
env_material
mucose
study_id_mom
10011U
id_merged_simple
10011U_BSL
id_merged
10011U_BSL1
diet_info
y
run
X
uid
75382
study_arm_x
Arm_3
study_group_x
IBD_IBD_AID
cd_uc_hc_diagnosis_x
UC
ibd_group_x
IBD
timepoint_x
baseline_29_weeks
timepoint2
BSL
timepoint4
BSL1
study_id_mom1
10011U
group
IBD_AID
total_grams
3237
energy
2460
total_fat
119
total_carbohydrate
279
total_protein
94
animal_protein
57
vegetable_protein
37
alcohol
0
cholesterol
240
total_saturated_fatty_acids_sfa_
35
total_monounsaturated_fatty_acids_mufa_
51
total_polyunsaturated_fatty_acids_pufa_
23
fructose
33
galactose
2
glucose
27
lactose
12
maltose
2
sucrose
74
starch
74
total_dietary_fiber
32
soluble_dietary_fiber
9
insoluble_dietary_fiber
23
pectins
6
total_vitamin_a_activity_international_units_
10710
beta_carotene_equivalents_derived_from_provitamin_a_carotenoids_
5340
retinol
544
vitamin_d_calciferol_
2
total_alpha_tocopherol_equivalents
27
vitamin_e_total_alpha_tocopherol_
24
beta_tocopherol
1
gamma_tocopherol
14
delta_tocopherol
2
vitamin_k_phylloquinone_
181
vitamin_c_ascorbic_acid_
132
thiamin_vitamin_b1_
1
riboflavin_vitamin_b2_
2
niacin_vitamin_b3_
16
pantothenic_acid
5
vitamin_b_6_pyridoxine_pyridoxyl__pyridoxamine_
2
total_folate
306
vitamin_b_12_cobalamin_
3
calcium
1639
phosphorus
1756
magnesium
510
iron
14
zinc
12
copper
2
selenium
82
sodium
2469
potassium
3273
sfa_4_0_butyric_acid_
1
sfa_6_0_caproic_acid_
1
sfa_8_0_caprylic_acid_
0
sfa_10_0_capric_acid_
1
sfa_12_0_lauric_acid_
1
sfa_14_0_myristic_acid_
4
sfa_16_0_palmitic_acid_
18
sfa_17_0_margaric_acid_
0
sfa_18_0_stearic_acid_
7
sfa_20_0_arachidic_acid_
0
sfa_22_0_behenic_acid_
0
mufa_14_1_myristoleic_acid_
0
mufa_16_1_palmitoleic_acid_
1
mufa_18_1_oleic_acid_
49
mufa_20_1_gadoleic_acid_
0
mufa_22_1_erucic_acid_
0
pufa_18_2_linoleic_acid_
21
pufa_18_3_linolenic_acid_
2
pufa_18_4_parinaric_acid_
0
pufa_20_4_arachidonic_acid_
0
pufa_20_5_eicosapentaenoic_acid_epa_
0
pufa_22_5_docosapentaenoic_acid_dpa_
0
pufa_22_6_docosahexaenoic_acid_dha_
0
tryptophan
1
threonine
4
isoleucine
4
leucine
8
lysine
6
methionine
2
cystine
1
phenylalanine
4
tyrosine
3
valine
5
arginine
5
histidine
2
alanine
4
aspartic_acid
9
glutamic_acid
20
glycine
3
proline
6
serine
4
aspartame
1
saccharin
0
caffeine
91
phytic_acid
1401
oxalic_acid
610
x3_methylhistidine
4
sucrose_polyester
0
ash
19
water
2766
perc_calories_from_fat
42
perc_calories_from_carbohydrate
44
perc_calories_from_protein
15
perc_calories_from_alcohol
0
perc_calories_from_sfa
13
perc_calories_from_mufa
18
perc_calories_from_pufa
8
polyunsaturated_to_saturated_fat_ratio
1
cholesterol_to_saturated_fatty_acid_index
48
total_vitamin_a_activity_retinol_equivalents_
1434
trans_18_1_trans_octadecenoic_acid_
2
trans_18_2_trans_octadecadienoic_acid_
1
trans_16_1_trans_hexadecenoic_acid_
0
total_trans_fatty_acids_trans_
3
user_nutrient_1
0
user_nutrient_2
0
user_nutrient_3
0
user_nutrient_4
0
user_nutrient_5
0
user_nutrient_6
0
user_nutrient_7
0
user_nutrient_8
0
user_nutrient_9
0
user_nutrient_10
0
beta_carotene_provitamin_a_carotenoid_
4645
alpha_carotene_provitamin_a_carotenoid_
1230
beta_cryptoxanthin_provitamin_a_carotenoid_
160
lutein__zeaxanthin
3541
lycopene
4414
dietary_folate_equivalents
339
natural_folate
259
synthetic_folate
47
total_vitamin_a_activity_retinol_activity_equivalents_
989
energy_kilojoules_
10291
niacin_equivalents
39
total_sugars
150
omega_3_fatty_acids
2
manganese
6
vitamin_e_international_units_
37
natural_alpha_tocopherol_rrr_alpha_tocopherol_or_d_alpha_tocopherol_
23
synthetic_alpha_tocopherol_all_rac_alpha_tocopherol_or_dl_alpha_tocopherol_
3
daidzein
0
genistein
0
glycitein
0
coumestrol
0
biochanin_a
0
formononetin
0
added_sugars_by_available_carbohydrate_
94
acesulfame_potassium
1
sucralose
0
available_carbohydrate
246
glycemic_index_glucose_reference_
59
glycemic_index_bread_reference_
85
glycemic_load_glucose_reference_
146
glycemic_load_bread_reference_
209
choline
289
betaine
78
erythritol
0
inositol
1
isomalt
0
lactitol
0
maltitol
0
mannitol
1
pinitol
0
sorbitol
1
xylitol
0
nitrogen
16
total_conjugated_linoleic_acid_cla_18_2_
0
cla_cis_9_trans_11
0
cla_trans_10_cis_12
0
tagatose
2
vitamin_d2_ergocalciferol_
0
vitamin_d3_cholecalciferol_
2
added_sugars_by_total_sugars_
87
total_grains_ounce_equivalents_
5
whole_grains_ounce_equivalents_
3
refined_grains_ounce_equivalents_
3
pufa_18_3_n_3_alpha_linolenic_acid_ala_
2
solid_fats
48
citrus_juice
0
fruit_juice_excluding_citrus_juice
0
citrus_fruit
0
fruit_excluding_citrus_fruit
2
avocado_and_similar
0
fried_fruits
0
fruit_based_savory_snack
0
dark_green_vegetables
1
deep_yellow_vegetables
0
tomato
1
white_potatoes
0
fried_potatoes
0
other_starchy_vegetables
0
legumes_cooked_dried_beans_
0
other_vegetables
1
fried_vegetables
0
vegetable_juice
0
vegetable_based_savory_snack
0
grains_flour_and_dry_mixes_whole_grain
1
grains_flour_and_dry_mixes_some_whole_grain
0
grains_flour_and_dry_mixes_refined_grain
0
loaf_type_bread_and_plain_rolls_whole_grain
1
loaf_type_bread_and_plain_rolls_some_whole_grain
1
loaf_type_bread_and_plain_rolls_refined_grain
0
other_breads_quick_breads_corn_muffins_tortillas_whole_grain
0
other_breads_quick_breads_corn_muffins_tortillas_some_whole_grain
1
other_breads_quick_breads_corn_muffins_tortillas_refined_grain
0
crackers_whole_grain
0
crackers_some_whole_grain
0
crackers_refined_grain
0
pasta_whole_grain
0
pasta_some_whole_grain
0
pasta_refined_grain
0
ready_to_eat_cereal_not_presweetened_whole_grain
0
ready_to_eat_cereal_not_presweetened_some_whole_grain
0
ready_to_eat_cereal_not_presweetened_refined_grain
0
ready_to_eat_cereal_presweetened_whole_grain
0
ready_to_eat_cereal_presweetened_some_whole_grain
0
ready_to_eat_cereal_presweetened_refined_grain
0
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_whole_grain
0
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_some_whole_grai
0
cakes_cookies_pies_pastries_danish_doughnuts_and_cobblers_refined_grain
1
snack_bars_whole_grain
0
snack_bars_some_whole_grain
0
snack_bars_refined_grain
0
snack_chips_whole_grain
0
snack_chips_some_whole_grain
0
snack_chips_refined_grain
0
popcorn
0
flavored_popcorn
0
baby_food_grain_mixtures_refined_grain
0
beef
1
lean_beef
0
veal
0
lean_veal
0
lamb
0
lean_lamb
0
fresh_pork
0
lean_fresh_pork
0
cured_pork
0
lean_cured_pork
0
game
0
poultry
0
lean_poultry
0
fried_chicken_commercial_entre_and_fast_food
0
fish_fresh_and_smoked
0
lean_fish_fresh_and_smoked
0
fried_fish_commercial_entre_and_fast_food
0
shellfish
0
fried_shellfish_commercial_entre_and_fast_food
0
cold_cuts_and_sausage
0
lean_cold_cuts_and_sausage
0
organ_meats
0
baby_food_meat_mixtures
0
meat_based_savory_snack
0
eggs
0
egg_substitute
0
nuts_and_seeds
4
nut_and_seed_butters
2
meat_alternatives
0
milk_whole
0
milk_reduced_fat
0
milk_low_fat_and_fat_free
0
milk_nondairy
0
ready_to_drink_flavored_milk_whole
0
ready_to_drink_flavored_milk_reduced_fat
0
ready_to_drink_flavored_milk_low_fat_and_fat_free
0
sweetened_flavored_milk_beverage_powder_with_non_fat_dry_milk
0
artificially_sweetened_flavored_milk_beverage_powder_with_non_fat_dry_milk
0
sweetened_flavored_milk_beverage_powder_without_non_fat_dry_milk
0
artificially_sweetened_flavored_milk_beverage_powder_without_non_fat_dry_milk
0
cheese_full_fat
1
cheese_reduced_fat
1
cheese_low_fat_and_fat_free
0
cheese_nondairy
0
yogurt_sweetened_whole_milk
0
yogurt_sweetened_low_fat
0
yogurt_sweetened_fat_free
0
yogurt_artificially_sweetened_whole_milk
0
yogurt_artificially_sweetened_low_fat
0
yogurt_artificially_sweetened_fat_free
0
yogurt_nondairy
0
frozen_dairy_dessert
0
frozen_nondairy_dessert
0
pudding_and_other_dairy_dessert
0
artificially_sweetened_pudding_and_other_dairy_dessert
0
cream
0
cream_reduced_fat
0
cream_low_fat_and_fat_free
0
cream_nondairy
2
dairy_based_sweetened_meal_replacement_supplement
0
dairy_based_artificially_sweetened_meal_replacement_supplement
0
infant_formula
0
infant_formula_nondairy
0
margarine_regular
1
margarine_reduced_fat
0
oil
0
shortening
0
butter_and_other_animal_fats_regular
0
butter_and_other_animal_fats_reduced_fat
0
salad_dressing_regular
0
salad_dressing_reduced_fat_reduced_calorie_fat_free
0
sugar
0
sugar_substitute
0
syrup_honey_jam_jelly_preserves
1
sauces_sweet_regular
0
sauces_sweet_reduced_fat_reduced_calorie_fat_free
0
chocolate_candy
0
non_chocolate_candy
0
frosting_or_glaze
0
sweetened_soft_drinks
0
artificially_sweetened_soft_drinks
0
unsweetened_soft_drinks
0
sweetened_fruit_drinks
0
artificially_sweetened_fruit_drinks
0
sweetened_tea
0
artificially_sweetened_tea
0
unsweetened_tea
1
sweetened_coffee
0
artificially_sweetened_coffee
0
unsweetened_coffee
2
sweetened_coffee_substitutes
0
artificially_sweetened_coffee_substitutes
0
unsweetened_coffee_substitutes
0
sweetened_water
0
artificially_sweetened_water
0
unsweetened_water
4
nondairy_based_sweetened_meal_replacement_supplement
0
nondairy_based_artificially_sweetened_meal_replacement_supplement
0
nondairy_based_unsweetened_meal_replacement_supplement
0
non_alcoholic_beer
0
non_alcoholic_light_beer
0
beer_and_ales
0
cordial_and_liqueur
0
distilled_liquor
0
wine
0
gravy_regular
0
gravy_reduced_fat_fat_free
0
sauces_and_condiments_regular
0
sauces_and_condiments_reduced_fat
0
pickled_foods
0
miscellaneous_dessert
0
non_grain_flour_and_similar
0
soup_broth
0
baby_food_dessert
0
miscellaneous_baby_food_mixtures
0
baby_food_grain_mixtures_whole_grain
0
baby_food_grain_mixtures_some_whole_grain
0
hei_2015_total_score
79
energy_1
7379
total_vegetable_servings_in_cup_equivalents
4
greens_and_beans_servings_in_cup_equivalents
2
total_fruit_servings_in_cup_equivalents
4
whole_fruit_servings_in_cup_equivalents
4
whole_grain_servings_in_ounce_equivalents
8
dairy_servings_in_cup_equivalents
7
total_protein_servings_in_ounce_equivalents
20
sea_food_and_plant_protein_servings_in_ounce_equivalents
16
sodium_intake_in_grams
7
refined_grains_in_ounce_equivalents
8
kcal_from_added_sugars
1046
hei_2015_component_1_total_vegetables_0_5_
3
hei_2015_component_2_greens_and_beans_0_5_
5
hei_2015_component_3_total_fruit_0_5_
4
hei_2015_component_4_whole_fruit_0_5_
5
hei_2015_component_5_whole_grains_0_10_
7
hei_2015_component_6_dairy_0_10_
8
hei_2015_component_7_total_protein_foods_0_5_
5
hei_2015_component_8_seafood_and_plant_protein_0_5_
5
hei_2015_component_9_fatty_acid_ratio_0_10_
7
hei_2010_component_10_sodium_0_10_
10
hei_2015_component_11_refined_grains_0_10_
10
hei_2015_component_12_added_sugars_0_10_
6
hei_2015_component_13_saturated_fats_0_10_
4
total_vegetable_servings_in_cup_equivalents_per_1000_kcal
1
greens_and_beans_servings_in_cup_equivalents_per_1000_kcal
0
total_fruit_servings_in_cup_equivalents_per_1000_kcal
1
whole_fruit_servings_in_cup_equivalents_per_1000_kcal
1
whole_grain_servings_in_ounce_equivalents_per_1000_kcal
1
dairy_servings_in_cup_equivalents_per_1000_kcal
1
protein_servings_in_ounce_equivalents_per_1000_kcal
3
sea_food_and_plant_protein_servings_in_ounce_equivalents_per_1000_kcal
2
fatty_acid_ratio
2
sodium_intake_in_grams_per_1000_kcal
1
refined_grains_in_ounce_equivalents_per_1000_kcal
1
percent_kcal_from_added_sugars
14
percent_saturated_fatty_acids
13
ahei_10_score_0_110_
74
age
32
bmi
24.5
race
White
hispanic_or_latino_descent
No
current_smoking_status
Non_smoker
alcohol_during_pregnancy
No
alcohol_but_not_during_pregnancy
Yes
recreational_drugs_during_preg
No
general_health_status
Very_good
marital_status
Married
people_living_in_your_household
4
highest_education
Graduate_or_professional_degree
annual_gross_household_income
$20000_$39000
psoriasis
No
lupus
No
rheumatoid_arthritis
No
chronic_intestinal_disease_controls_only
missing
high_blood_pressure
No
autoimmune_disorders_not_ibd
Yes
all_diasease_names
missing
other_diseases
No
if_other_disease_please_specify
missing
do_you_have_diarrhea
missing
do_you_have_constipation
missing
current_illness_or_infection
No
age_at_diagnosis
missing
disease_location
missing
behaviour
missing
perianal_disease
No
previous_surgery_for_ibd
No
hbi_score
remission
have_you_had_any_recent_flare_ups
No
gestational_week_of_the_flare
missing
ibd_general_name
No
ibd_meds
No
probiotics
Yes
prenatal_vitamins
Yes
vitamin_or_supplement
Yes
vitamin_name
vitamin_supplement_type_DHA_vitamin_supplement_type_Fish_oil
non_ibd_meds
missing
antibiotic_currently
No
antibiotics_in_the_last_year
No
antibiotic_name
No
antibiotic_during_pregnancy
No
gestational_weeks_of_antibiotics1
missing
special_diets
IBD_AID
pregnancies
3
children_have_you_given_birth_to
2
miscarriages_or_abortions
0
gestational_age_at_enrollment_weeks
28
fertility_medications
No
intrauterine_insemination
No
in_vitro_fertilization
No
diabetes_pregnancy_related
Yes
hypertension_pregnancy_related
No
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.human-vaginal