Candidatus Midichloria mitochondrii Ir_d3 MAG
Candidatus Midichloria mitochondrii
Candidatus Midichloria MAG from a Ixodes ricinus tick metagenome
ENA first public
2024-07-08
External Id
SAMEA114858550
INSDC center name
National Institute of Public Health and Environment (RIVM)
INSDC last update
2023-12-08T14:09:12Z
INSDC status
public
Submitter Id
Ir_d3_Mm
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
Flye 2.9-b1768 , Polypolish v0.5.0
binning parameters
N/A
binning software
Tick holobiome metagenomic reads were filtered using reference genome GCA_000219355.1, mapped reads were then assembled
broad-scale environmental context
dune
collection date
2021-10-14
completeness score
100
completeness software
checkm
contamination score
0
environmental medium
Arthropoda
geographic location (country and/or sea)
Netherlands
geographic location (latitude)
52.303761
geographic location (longitude)
4.533191
isolation_source
Ixodes ricinus
local environmental context
coastal dune
metagenomic source
tick metagenome
project name
Comparative genomics of pathogenic Rickettsial symbionts in ticks
sample derived from
ERS17138677
sample name
Ir_d3_Mm
scientific_name
Candidatus Midichloria mitochondrii
taxonomic identity marker
Whole genome