ceb783ba-78dc-4dc9-9ea8-07224b698dca-asg-bin.115
Mycoplasmatales bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2024-08-07
GAL
Nova Southeastern University
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
ceb783ba-78dc-4dc9-9ea8-07224b698dca
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ| MARIA DEL PILAR| DANIEL TOLEDO
collecting institution
UNIVERSITY OF PUERTO RICO MAYAGUEZ
collection date
2021-05-10
completeness score
85.71
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0
depth
1.0
environmental medium
adult coral tissue
geographic location (country and/or sea)
Puerto Rico
geographic location (latitude)
17.96
geographic location (longitude)
-67.05
geographic location (region and locality)
Cayo Enrique
habitat
coral reef
host life stage
adult
host scientific name
Gorgonia ventalina
host sex
not collected
host taxid
204384
identified_by
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ
identifier_affiliation
UNIVERSITY OF PUERTO RICO MAYAGUEZ
investigation type
metagenome-assembled genome
isolation_source
Coral: Gorgonia ventalina
local environmental context
marine benthic biome
metagenomic source
coral metagenome
number of standard tRNAs extracted
28
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA115909933
sample name
ceb783ba-78dc-4dc9-9ea8-07224b698dca
scientific_name
Mycoplasmatales bacterium
sequencing method
Pacbio Sequel II
specimen_id
NSU0053405
specimen_voucher
Sanger Institute Genome PR05
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
jaGorVent5.Mycoplasmatales_1