envS033
seawater metagenome
Vial number envS033 of filtered seawater sample from Capo Passero-Italy collected from the bottom at 2 m depth
ENA first public
2024-12-15
INSDC center name
MARUM - Center for Marine Environmental Sciences
INSDC status
public
Submitter Id
153177:62ef9ee7-1d76-48cd-904e-963aec203491
broad-scale environmental context
marine biome [ENVO:00000447]
broker name
GFBIO
collection date
2019-09-21
depth
2
depth category
Shallow
dna_concentration
2.05
environmental medium
coral reef [ENVO:00000150] | coastal sea water [ENVO:00002150]
environmental package
water
experiment_id
envS033_PCR_1
geographic location (country and/or sea)
Italy
geographic location (latitude)
36.686667
geographic location (longitude)
15.138278
geographic location (region and locality)
Capo Passero
investigation type
mimarks-survey
library_number
15
local environmental context
planktonic material [ENVO:01000063]
multiplex_identifier_forward
GATGTGTG
multiplex_identifier_reverse
GTATCACA
n_cycles_pcr
32
pcr primers
FWD:CCTACGGGNGGCWGCAG;REV:GACTACHVGGGTATCTAATCC
pcr_batch_number
PCR-S127
pcr_replicate
envS033_1
project name
ForaInva
purified pcr product voucher id
PR-1171
run_information
R1 file contains forward reads - sequences were generated in mixed orientation, separate read files submitted for each orientation
sample name
153177:62ef9ee7-1d76-48cd-904e-963aec203491
sample_description
Vial number envS033 of filtered seawater sample from Capo Passero-Italy collected from the bottom at 2 m depth
scientific_name
seawater metagenome
sequencing method
Illumina MiSeq
submitted to insdc
true
substrate_type
bottom
target subfragment
V3-V4
total depth of water column
2.0
water environmental package
water