Metagenome-assembled genome: SRR3719656_binner23_Refined_85
uncultured Ilumatobacter sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719656 of study SRP043213.
ENA first public
2024-03-07
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR3719656_binner23_Refined_85
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.14.1
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v1.0.0
broad-scale environmental context
water
broker name
EBI-EMG
collection date
2012-09-21
completeness score
98.9
completeness software
CheckM2_v1.0.1
contamination score
0.53
environmental medium
fjord
geographic location (country and/or sea)
not provided
geographic location (latitude)
48.60000000
geographic location (longitude)
-123.50000000
investigation type
metagenome-assembled genome
isolation_source
marine metagenome
local environmental context
marine
metagenomic source
marine metagenome
project name
Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.
sample derived from
SAMN05224536
sample name
SRR3719656_binner23_Refined_85
scientific_name
uncultured Ilumatobacter sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach