Mouse Cecum metagenome, 7 days post Syngeneic BMT, replicate B
mouse gut metagenome
Metagenome from mouse Cecum contents collected 7 days after Syngeneic BMT, replicate B. DNA was extracted from contents of multiple co-housed mice. Samples also contain a DNA spike-in (0.05% of total DNA) of ATCC #MSA-1014
collection_date
2021
isolation_source
cecum
env_broad_scale
anatomical entity environment[ENVO_2100000]
env_local_scale
digestive tract environment[ENVO_01001033]
env_medium
fecal material[ENVO_00002003]
geo_loc_name
USA
host
Mus musculus
lat_lon
42.284128 N 83.731272 W
chem_administration
acid water
collection_method
direct collection from indicated gut location of euthanized mice
host_body_habitat
Cecum
host_common_name
mouse
host_disease
GVHD model system; splenic T cells from BALB/c donors or C57BL/6 were enriched by utilizing Pan-T microbeads (130-095-130, Miltenyi Biotec) and bone marrow was collected from the same donors. On day 0, 3x10^6 T cells and 5x10^6 bone marrow cells were injected intravenously into C57BL/6 recipient mice. Recipient mice received 10Gy of irradiation on day -1.
host_subspecf_genlin
C57BL/6 (#027, B6, H-2Kb)
host_taxid
10090
misc_param
f11fc8241dd1beb8f9e141fdd5125113
organism_count
5
perturbation
GVHD model system; splenic T cells from BALB/c donors or C57BL/6 were enriched by utilizing Pan-T microbeads (130-095-130, Miltenyi Biotec) and bone marrow was collected from the same donors. On day 0, 3x10^6 T cells and 5x10^6 bone marrow cells were injected intravenously into C57BL/6 recipient mice. Recipient mice received 10Gy of irradiation on day -1.
other_sample_id
S148
BioSampleModel
MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated