Metagenome-assembled genome: S-Fe12_120417.76_1677755073
uncultured Lachnospiraceae bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR675481 of study ERP008710.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112715849
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T00:25:32Z
INSDC last update
2023-03-06T00:25:32Z
INSDC status
public
Submitter Id
S-Fe12_120417.76_1677755073
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2012-01-01
completeness score
87.15
completeness software
CheckM
contamination score
2.7
environmental medium
feces
geographic location (country and/or sea)
Sweden
geographic location (latitude)
57.69745
geographic location (longitude)
11.98583
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
A Catalogue of the Mouse Gut Metagenome
sample derived from
SAMEA3134523
sample name
S-Fe12_120417.76_1677755073
scientific_name
uncultured Lachnospiraceae bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach