SA01.13C1a
fish gut metagenome
Salmon meta transcriptomic data from Distal gut content; animal SA01.13 from tank SA01 with treatment Tiger
ENA-FIRST-PUBLIC
2023-03-22
ENA-LAST-UPDATE
2023-03-22
External Id
SAMEA8141545
INSDC center alias
UNIVERSITY OF COPENHAGEN
INSDC center name
UNIVERSITY OF COPENHAGEN
INSDC first public
2023-03-22T12:21:33Z
INSDC last update
2023-03-22T12:21:33Z
INSDC status
public
Submitter Id
SA01_13C1a_metaT
adapters
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT
collection date
2019-08-12
geographic location (country and/or sea)
Norway
geographic location (latitude)
66.079905
geographic location (longitude)
12.587848
geographic location (region and locality)
Dønna; Nordland county
host body site
Distal gut content
host common name
Atlantic salmon
host diet
Fermented algae meal (added in in oil coating)
host diet treatment
Tiger: SA Control
host diet treatment concentration
0
host disease status
Wounded:-
host gutted mass
542.8
host length
37.5
host scientific name
Salmo salar
host storage container
LetSea Tank: Tiger
host storage container pH
7.05
host storage container temperature
12.76
host subject id
SA01.13
host taxid
8030
host total mass
633.4
library name
Illumina Ribo-Zero Plus rRNA Depletion Kit + NEB Next Ultra RNA Library Prep Kit
library selection
rRNA depletion + strand specific library
nucleic acid extraction
D-rex protocol
project name
HoloFood Salmon - MetaTranscriptomics
reference host genome for decontamination
GCA_000000000.0
sample name
SA01_13C1a_metaT
sample storage buffer
Shield
sample storage container
2ml E-matrix
sample storage location
UCPH
sample storage temperature
-20
sample volume or weight for DNA extraction
0.2
scientific_name
fish gut metagenome
sequencing method
Illumina NovaSeq 6000
trial timepoint
60