Metagenome-assembled genome: SRR13485158_binner13_8
uncultured Pseudodesulfovibrio sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13485158 of study SRP302406.
ENA first public
2024-04-03
External Id
SAMEA115167664
INSDC center name
EMG
INSDC last update
2024-01-31T10:35:50Z
INSDC status
public
Submitter Id
SRR13485158_binner13_8
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.15.3
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v1.0.0
broad-scale environmental context
environmental
broker name
EBI-EMG
collection date
2018-11
completeness score
85.25
completeness software
CheckM2_v1.0.1
contamination score
0.54
environmental medium
marine
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
24.52167
geographic location (longitude)
126.165
investigation type
metagenome-assembled genome
isolation_source
marine metagenome
local environmental context
aquatic
metagenomic source
marine metagenome
project name
Illumina MiSeq sequencing: 16S rRNA metagenomic sequencing of the deep sea mooring chain surface: link 1 inner
sample derived from
SAMN17377533
sample name
SRR13485158_binner13_8
scientific_name
uncultured Pseudodesulfovibrio sp.
sequencing method
Illumina MiSeq
taxonomic identity marker
multi-marker approach