788d0df1-6c1c-405c-a733-ebde59d94c0a-asg-MAGScoT_cleanbin_000002
Rhodococcus qingshengii
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-01-29
GAL
Portland State University
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
788d0df1-6c1c-405c-a733-ebde59d94c0a
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
PORTLAND STATE UNIVERSITY
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
NOT COLLECTED
collecting institution
Kamo Aquarium | Tsuruoka | Japan
collection date
2021-10-17
completeness score
76.73
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
2.28
environmental medium
adult jellyfish tissue
geographic location (country and/or sea)
Japan
geographic location (latitude)
38.46
geographic location (longitude)
139.43
geographic location (region and locality)
Tsuruoka | Kamo Aquarium
habitat
NOT COLLECTED
host life stage
adult
host scientific name
Rhopilema esculentum
host sex
not collected
host taxid
499914
identified_by
IKEDA SHUHEI
identifier_affiliation
Kamo Aquarium | Tsuruoka | Japan
investigation type
metagenome-assembled genome
isolation_source
Jellyfish: Rhopilema esculentum
local environmental context
marine biome
metagenomic source
jellyfish metagenome
number of standard tRNAs extracted
45
organism part
WHOLE ORGANISM
original collection date
2010-08-27
original collection location
Tsuruoka | Yamagata | Japan
project name
ASG
sample collection method
NOT COLLECTED
sample derived from
SAMEA117648542
sample name
788d0df1-6c1c-405c-a733-ebde59d94c0a
scientific_name
Rhodococcus qingshengii
sequencing method
Pacbio Sequel II
specimen_id
PORT0000213
specimen_voucher
KRE_A
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
jsRhoEscu1.Rhodococcus_qingshengii_1