17ea2e52-9824-465e-b6c8-e093369c4810-asg-MAGScoT_cleanbin_000005
Mycoplasmatales bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-01-29
GAL
Portland State University
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
17ea2e52-9824-465e-b6c8-e093369c4810
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
PORTLAND STATE UNIVERSITY
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
NOT COLLECTED
collecting institution
Kamo Aquarium | Tsuruoka | Japan
collection date
2021-10-17
completeness score
75.94
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
2.63
environmental medium
adult jellyfish tissue
geographic location (country and/or sea)
Japan
geographic location (latitude)
38.46
geographic location (longitude)
139.43
geographic location (region and locality)
Tsuruoka | Kamo Aquarium
habitat
NOT COLLECTED
host life stage
adult
host scientific name
Rhopilema esculentum
host sex
not collected
host taxid
499914
identified_by
IKEDA SHUHEI
identifier_affiliation
Kamo Aquarium | Tsuruoka | Japan
investigation type
metagenome-assembled genome
isolation_source
Jellyfish: Rhopilema esculentum
local environmental context
marine biome
metagenomic source
jellyfish metagenome
number of standard tRNAs extracted
32
organism part
WHOLE ORGANISM
original collection date
2010-08-27
original collection location
Tsuruoka | Yamagata | Japan
project name
ASG
sample collection method
NOT COLLECTED
sample derived from
SAMEA117648542
sample name
17ea2e52-9824-465e-b6c8-e093369c4810
scientific_name
Mycoplasmatales bacterium
sequencing method
Pacbio Sequel II
specimen_id
PORT0000213
specimen_voucher
KRE_A
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
jsRhoEscu1.Mycoplasmatales_1