Metagenome-assembled genome: iMGMC-621_1678881692
uncultured Vampirovibrio sp.
This is a Metagenome-assembled genome derived from the primary whole genome shotgun (WGS) of multiple metagenomic data sets ERP008710,ERP011836,ERP115625. This sample represents a Metagenome-assembled genome from the runs of the following projects: ERP008710 (ERR675308-ERR675687); ERP115625 (ERR3357520-ERR3357594, ERR3357615-ERR3357644); ERP011836 (ERR990521-ERR990523).
ENA-FIRST-PUBLIC
2023-03-23
ENA-LAST-UPDATE
2023-03-23
External Id
SAMEA112816062
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-23T16:21:23Z
INSDC last update
2023-03-23T16:21:23Z
INSDC status
public
Submitter Id
iMGMC-621_1678881692
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
not provided
completeness score
91.3
completeness software
CheckM
contamination score
1.85
environmental medium
feces
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
This sample represents a Metagenome-assembled genome assembled from runs of multiple projects: ERP008710 (ERR675308-ERR675687); ERP115625 (ERR3357520-ERR3357594, ERR3357615-ERR3357644); ERP011836 (ERR990521-ERR990523).
sample derived from
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sample name
iMGMC-621_1678881692
scientific_name
uncultured Vampirovibrio sp.
sequencing method
Illumina HiSeq 2000, Illumina MiSeq, Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach