Metagenome-Assembled Genome: SRR16280040_bin.12_MetaWRAP_v1.3_MAG
uncultured Dialister sp.
This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR16280040 of study SRP340671.
assembly software
metaspades v3.15.3
broad-scale environmental context
Human digestive system
collection date
2019-05-01/2020-10-30
sample derived from
SAMN22185218
geographic location (longitude)
122.12
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
contamination score
0.0
taxonomic classification
The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Allisonella;s__
ENA-FIRST-PUBLIC
2023-07-20T12:20:53Z
ENA-LAST-UPDATE
2023-07-20T12:20:53Z
completeness software
CheckM
geographic location (country and/or sea)
China
binning software
MetaWRAP v1.3
organism
uncultured Allisonella sp.
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
54.43
environmental medium
faeces
geographic location (latitude)
37.51
scientific_name
uncultured Allisonella sp.
common name
investigation type
metagenome-assembled genome
local environmental context
colon
metagenomic source
human feces metagenome
project name
Parkinson's disease has been improved to association with gastrointestinal symptoms and gut microbiota disorders, probiotics is considered as a technique for GI symptoms, while the regulative effect of probiotics on Parkinson's disease is limited. The supplementary treatment of Probio-M8 on Parkinson has been investigation.
sequencing method
Illumina HiSeq 2500
isolation_source
human feces metagenome
ENA-FIRST-PUBLIC
2023-07-20
ENA-LAST-UPDATE
2023-07-20