5dec95ef-cc79-4718-9832-ca293eda717f-asg-bin.31
Vibrio splendidus
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
1000-01-01
GAL
University of Derby
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
5dec95ef-cc79-4718-9832-ca293eda717f
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
Michael Sweet
collecting institution
University of Derby
collection date
2023-10-18
completeness score
68.52
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.26
culture_or_strain_id
EVP10
environmental medium
adult coral tissue
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
not collected
geographic location (longitude)
not collected
geographic location (region and locality)
University of Derby
habitat
Aquarium
host life stage
adult
host scientific name
Eunicella verrucosa
host sex
not provided
host taxid
396355
identified_by
Jamie Craggs
identifier_affiliation
Horniman Museum
investigation type
metagenome-assembled genome
isolation_source
Coral: Eunicella verrucosa
local environmental context
marine benthic biome
metagenomic source
coral metagenome
number of standard tRNAs extracted
101
organism part
WHOLE ORGANISM
project name
ToL
sample derived from
SAMEA115909923
sample name
5dec95ef-cc79-4718-9832-ca293eda717f
scientific_name
Vibrio splendidus
sequencing method
Pacbio Sequel II
specimen_id
UDUK1666466
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
jaEunVerr1.Vibrio_splendidus_1