CC03.15F1a
chicken gut metagenome
Prior chicken data from Caecum content; animal CC03.15 from cage CC03 with treatment CC
ENA-FIRST-PUBLIC
2023-03-22T12:21:28Z
ENA-LAST-UPDATE
2023-03-22T12:21:28Z
External Id
SAMEA7697608
INSDC center name
UNIVERSITY OF COPENHAGEN
INSDC first public
2023-03-22T12:21:28Z
INSDC last update
2023-03-22T12:21:28Z
INSDC status
public
Submitter Id
CC03_15F1a_metaG
adapters
AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;GAACGACATGGCTACGATCCGACTT
collection date
2019-10-15
geographic location (country and/or sea)
Spain
geographic location (latitude)
41.170047
geographic location (longitude)
1.168491
geographic location (region and locality)
El Morell; Tarragona
host body site
Caecum content
host breed
Cobb
host common name
Chicken
host diet treatment
Control
host disease status
Campylobacter:+;Salmonella:-;Clostridium:-
host scientific name
Gallus gallus
host sex
male
host storage container temperature
21
host subject id
CC03.15
host taxid
9031
host total mass
2158.0
nucleic acid extraction
D-rex protocol
project
HoloFood
project name
HoloFood Chicken - Prior Chicken
reference host genome for decontamination
GCF_000002315.6
sample name
CC03_15F1a_metaG
sample storage buffer
Shield
sample storage container
E-matrix 2ml
sample storage location
UCPH
sample storage temperature
-20
sample volume or weight for DNA extraction
0.2
scientific_name
chicken gut metagenome
sequencing method
MGISEQ-2000
trial length
35
trial timepoint
35