Metagenome-assembled genome: ERR599078_concoct_16
uncultured Planctomycetaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR599078 of study ERP001736.
ENA first public
2024-03-17
INSDC center name
EMG
INSDC status
public
Submitter Id
ERR599078_concoct_16
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.12.0
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v1.0.0
broad-scale environmental context
water
broker name
EBI-EMG
collection date
not provided
completeness score
72.8
completeness software
CheckM2_v1.0.1
contamination score
4.61
environmental medium
tara
geographic location (country and/or sea)
not provided
geographic location (latitude)
43.67920000
geographic location (longitude)
-16.83440000
investigation type
metagenome-assembled genome
isolation_source
marine metagenome
local environmental context
ocean
metagenomic source
marine metagenome
project name
Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
sample derived from
SAMEA2623886
sample name
ERR599078_concoct_16
scientific_name
uncultured Planctomycetaceae bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach