Metagenome-assembled genome: Group2-8A_111220.21_1677754623
Eubacteriaceae bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR675462 of study ERP008710.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112714960
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T00:25:26Z
INSDC last update
2023-03-06T00:25:26Z
INSDC status
public
Submitter Id
Group2-8A_111220.21_1677754623
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2012-01-01
completeness score
86.58
completeness software
CheckM
contamination score
0.67
environmental medium
feces
geographic location (country and/or sea)
USA
geographic location (latitude)
40.70606
geographic location (longitude)
-73.99703
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
A Catalogue of the Mouse Gut Metagenome
sample derived from
SAMEA3134504
sample name
Group2-8A_111220.21_1677754623
scientific_name
Eubacteriaceae bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach