CA16.13F1a
chicken gut metagenome
Prior chicken data from Caecum content; animal CA16.13 from cage CA16 with treatment CO
ENA-FIRST-PUBLIC
2023-03-22
ENA-LAST-UPDATE
2023-03-22
External Id
SAMEA7697580
INSDC center alias
UNIVERSITY OF COPENHAGEN
INSDC center name
UNIVERSITY OF COPENHAGEN
INSDC first public
2023-03-22T12:21:28Z
INSDC last update
2023-03-22T12:21:28Z
INSDC status
public
Submitter Id
CA16_13F1a_metaG
adapters
AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;GAACGACATGGCTACGATCCGACTT
collection date
2019-03-11
geographic location (country and/or sea)
Spain
geographic location (latitude)
41.170047
geographic location (longitude)
1.168491
geographic location (region and locality)
El Morell; Tarragona
host body site
Caecum content
host breed
Cobb
host common name
Chicken
host diet treatment
Probiotic
host disease status
Campylobacter:-;Salmonella:-;Clostridium:-
host scientific name
Gallus gallus
host sex
male
host storage container temperature
21
host subject id
CA16.13
host taxid
9031
host total mass
2191.0
nucleic acid extraction
D-rex protocol
project name
HoloFood Chicken - Prior Chicken
reference host genome for decontamination
GCF_000002315.6
sample name
CA16_13F1a_metaG
sample storage buffer
Shield
sample storage container
E-matrix 2ml
sample storage location
UCPH
sample storage temperature
-20
sample volume or weight for DNA extraction
0.2
scientific_name
chicken gut metagenome
sequencing method
MGISEQ-2000
trial length
35
trial timepoint
35