Porphyromonadaceae bacterium UBA7173
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR5927699 of study SRP115267.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112727166
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:21:52Z
INSDC last update
2023-03-06T04:21:52Z
INSDC status
public
Submitter Id
extra-SRR5927699.48_1677798264
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2011-09-27
completeness score
54.32
completeness software
CheckM
contamination score
0.0
environmental medium
feces
geographic location (country and/or sea)
USA
geographic location (latitude)
37.767815
geographic location (longitude)
-122.394165
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice
sample derived from
SAMN06921532
sample name
extra-SRR5927699.48_1677798264
scientific_name
Porphyromonadaceae bacterium UBA7173
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach