Holdemanella porci
ENA-FIRST-PUBLIC
2023-11-07T00:47:20Z
ENA-LAST-UPDATE
2023-11-07T00:47:20Z
External Id
SAMEA114581536
INSDC center name
ICMB
INSDC first public
2023-11-07T00:47:20Z
INSDC last update
2023-11-07T00:47:20Z
INSDC status
public
Submitter Id
E07150-L1_cleanbin_000022
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
spades
binning parameters
refined binning from maxbin2 metabat2 vamb and concoct
binning software
MAGSCoT
broad-scale environmental context
hominid body
collection date
2012/2013
completeness score
82.5
completeness software
MAGSCoT
contamination score
4.166666667
contamination software
MAGSCoT
environmental medium
feces
geographic location (country and/or sea)
Denmark
geographic location (latitude)
not collected
geographic location (longitude)
not collected
investigation type
metagenome-assembled genome
isolation_source
Feces of Homo sapiens (DK)
local environmental context
hominid gut
metagenomic source
Human gut
sample derived from
SAMN10093245
sample name
E07150-L1_cleanbin_000022
scientific_name
Holdemanella porci
taxonomic classification
gtdtbk
taxonomic identity marker
gtdtbtk marker gene sets