Alistipes sp. UBA6068
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR3223202 of study SRP018789.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112724926
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:22:10Z
INSDC last update
2023-03-06T04:22:10Z
INSDC status
public
Submitter Id
extra-SRR3223202.67_1677796000
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
not provided
completeness score
86.28
completeness software
CheckM
contamination score
0.88
environmental medium
feces
geographic location (country and/or sea)
not provided
geographic location (latitude)
34.061184
geographic location (longitude)
-118.205574
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
16S rRNA from Mouse Models of Liver Disease Targeted Locus (Loci)
sample derived from
SAMN04547087
sample name
extra-SRR3223202.67_1677796000
scientific_name
Alistipes sp. UBA6068
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach