uncultured Lachnospiraceae bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR6032574 of study SRP109346.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112728398
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T00:25:37Z
INSDC last update
2023-03-06T00:25:37Z
INSDC status
public
Submitter Id
extra-SRR6032574.10_1677799176
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2015-10-30
completeness score
86.65
completeness software
CheckM
contamination score
0.68
environmental medium
feces
geographic location (country and/or sea)
USA
geographic location (latitude)
39.002346
geographic location (longitude)
-77.100914
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Creating animal models with natural microbiota to study disease resistance
sample derived from
SAMN07248912
sample name
extra-SRR6032574.10_1677799176
scientific_name
uncultured Lachnospiraceae bacterium
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach