uncultured Alistipes sp.
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR6945375 of study SRP137668.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112728799
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T00:25:00Z
INSDC last update
2023-03-06T00:25:00Z
INSDC status
public
Submitter Id
extra-SRR6945375.10_1677799361
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2016-01-01
completeness score
92.2
completeness software
CheckM
contamination score
7.31
environmental medium
feces
geographic location (country and/or sea)
USA
geographic location (latitude)
39.2639
geographic location (longitude)
-72.0561
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
mouse gut metagenome Transcriptome or Gene expression
sample derived from
SAMN08864408
sample name
extra-SRR6945375.10_1677799361
scientific_name
uncultured Alistipes sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach