wastewater metagenome
collection_date
2024-01-23
geo_loc_name
USA: North Carolina
isolation_source
wastewater
ww_population
108105
ww_sample_duration
24
ww_sample_matrix
raw wastewater
ww_sample_type
composite
ww_surv_target_1
SARS-CoV-2
ww_surv_target_1_known_present
yes
collected_by
North Carolina Department of Health and Human Services
purpose_of_ww_sampling
public health surveillance community-level
purpose_of_ww_sequencing
public health surveillance for the NC Wastewater Monitoring Network
sequenced_by
North Carolina State Laboratory of Public Health
ww_endog_control_1
pepper mild mottle virus
ww_endog_control_1_protocol
racki et al. 2014; haramoto et al 201
ww_flow
10.5
ww_industrial_effluent_percent
5
ww_ph
7
ww_population_source
census blocks clipped to wastewater service area polygon
ww_pre_treatment
yes
ww_sample_site
wastewater treatment plant
ww_surv_jurisdiction
NC
ww_surv_system_sample_id
SLPH002298
ww_surv_target_1_conc
168640
ww_surv_target_1_conc_unit
copies/L
ww_surv_target_1_gene
N gene(n1)
ww_surv_target_1_protocol
decaro et al. detection of bovine coronavirus using a taqman-based real-time rt-pcr assay.
ww_surv_target_2
SARS-CoV-2
ww_surv_target_2_conc
213200
ww_surv_target_2_conc_unit
copies/L
ww_surv_target_2_gene
N gene(n2)
ww_surv_target_2_known_present
yes
ww_temperature
4
BioSampleModel
SARS-CoV-2: wastewater surveillance