uncultured Eubacteriales bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR1762111 of study ERP020572.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112717726
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:21:46Z
INSDC last update
2023-03-06T04:21:46Z
INSDC status
public
Submitter Id
extra-ERR1762111.21_1677761135
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2008-01-23
completeness score
56.71
completeness software
CheckM
contamination score
2.35
environmental medium
feces
geographic location (country and/or sea)
USA
geographic location (latitude)
40.7128
geographic location (longitude)
74.0059
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Intergenerational transfer of antibiotic-perturbed microbiota enhances colitis in susceptible mice
sample derived from
SAMEA27201418
sample name
extra-ERR1762111.21_1677761135
scientific_name
uncultured Eubacteriales bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach