Paracoccaceae bacterium
assembly software
metaMDBG
habitat
semi-dark cave
host scientific name
Spongia officinalis
sample derived from
SAMEA115461022
geographic location (longitude)
5.60
number of standard tRNAs extracted
43
host sex
not applicable
specimen_id
GHC0000180
identified_by
THIERRY PEREZ
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
organism
Paracoccaceae bacterium
host taxid
252964
scientific_name
Paracoccaceae bacterium
geographic location (region and locality)
La Ciotat
host life stage
adult
investigation type
metagenome-assembled genome
GAL
Geomar Helmholtz Centre
MAG coverage software
Minimap2 (version 2.24-r1122)
metagenomic source
sponge metagenome
project name
ASG
sequencing method
Pacbio Sequel II
16s recovered
Yes
tolid
odSpoOffi1.Paracoccaceae_1
broad-scale environmental context
aquatic biome
collection date
2021-03-23
binning parameters
coverage; graph
contamination score
1.6
collected_by
THIERRY PEREZ
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
16S recovery software
PROKKA (version 1.14.5)
relationship
Heterotrophic Microbiome (Mostly)
geographic location (country and/or sea)
France
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
ani_screen
completeness score
88.51
environmental medium
adult sponge tissue
geographic location (latitude)
43.16
common name
commercial sponge
organism part
WHOLE ORGANISM
GAL_sample_id
NOT PROVIDED
identifier_affiliation
CNRS
specimen_voucher
NOT PROVIDED
local environmental context
marine benthic biome
depth
10-15
collecting institution
CNRS
isolation_source
Sponge: Spongia officinalis