Muribaculaceae bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR1707030 of study SRP051002.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112724492
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:21:50Z
INSDC last update
2023-03-06T04:21:50Z
INSDC status
public
Submitter Id
extra-SRR1707030.10_1677795826
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2011-11-23
completeness score
72.73
completeness software
CheckM
contamination score
0.0
environmental medium
feces
geographic location (country and/or sea)
Singapore
geographic location (latitude)
1.3
geographic location (longitude)
103.8
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Mouse gut metagenome before and after antibiotic treatment
sample derived from
SAMN03257079
sample name
extra-SRR1707030.10_1677795826
scientific_name
Muribaculaceae bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach