wastewater metagenome
collection_date
2024-05-01
geo loc name
USA: Colorado, El Paso, county
isolation_source
wastewater
collection_site_id
TP
project_name
SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads
ww_population
4779
ww_sample_duration
24 hours
ww_sample_matrix
raw wastewater
ww_sample_type
composite
ww_surv_target_1
SARS-CoV-2
ww_surv_target_1_known_present
no
collected_by
CDPHE
purpose_of_ww_sampling
public health surveillance community-level
purpose_of_ww_sequencing
diversity of mutations across entire genome
sequenced_by
CDPHE
ww_flow
0.279
ww_population_source
census blocks clipped to wastewater service area polygon
concentration_method
Ceres Nanosciences Nanotrap
extraction_method
Thermo Fisher Scientific King Fisher extraction
extraction_control
MHV
ww_sample_site
wastewater treatment plant
ww_surv_system_sample_id
TP20240502
ww_surv_target_1_conc
dPCR concentration
ww_surv_target_1_conc_unit
copies/L
ww_surv_target_1_gene
N2
BioSampleModel
SARS-CoV-2: wastewater surveillance