uncultured Anaeroplasmataceae bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR1648444 of study SRP049709.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112724263
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:22:00Z
INSDC last update
2023-03-06T04:22:00Z
INSDC status
public
Submitter Id
extra-SRR1648444.53_1677795733
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2011-11-01
completeness score
97.33
completeness software
CheckM
contamination score
0.11
environmental medium
feces
geographic location (country and/or sea)
China
geographic location (latitude)
32.03
geographic location (longitude)
118.46
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Gut microbiota of mouse Metagenome
sample derived from
SAMN03175164
sample name
extra-SRR1648444.53_1677795733
scientific_name
uncultured Anaeroplasmataceae bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach