Bacteroidales bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR5925364 of study SRP115082.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112726457
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:22:07Z
INSDC last update
2023-03-06T04:22:07Z
INSDC status
public
Submitter Id
extra-SRR5925364.38_1677797565
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2017-01-01
completeness score
96.31
completeness software
CheckM
contamination score
1.12
environmental medium
feces
geographic location (country and/or sea)
Canada
geographic location (latitude)
51.0486
geographic location (longitude)
-114.0708
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
A GUT MICROBIAL AUTOANTIGEN SUPPRESSES COLITIS
sample derived from
SAMN07490673
sample name
extra-SRR5925364.38_1677797565
scientific_name
Bacteroidales bacterium
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach