Lactobacillus taiwanensis
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR959127 of study SRP029277.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112724240
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:21:56Z
INSDC last update
2023-03-06T04:21:56Z
INSDC status
public
Submitter Id
extra-SRR959127.73_1677795726
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2012-10-26
completeness score
72.58
completeness software
CheckM
contamination score
4.84
environmental medium
feces
geographic location (country and/or sea)
China
geographic location (latitude)
30.866667
geographic location (longitude)
114.53333
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Variation of microbial metagenome in IBD induced by MC-LR
sample derived from
SAMN02324440
sample name
extra-SRR959127.73_1677795726
scientific_name
Lactobacillus taiwanensis
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach