Rodentibacter caecimuris
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR2665308 of study SRP064880.
assembly software
metaSPAdes
broad-scale environmental context
mouse digestive system
collection date
2014-03-01
sample derived from
SAMN04169172
geographic location (longitude)
113.18
binning parameters
default
contamination score
2.14
ENA-FIRST-PUBLIC
2023-03-06T04:21:55Z
ENA-LAST-UPDATE
2023-03-06T04:21:55Z
completeness software
CheckM
geographic location (country and/or sea)
China
binning software
metabat2
organism
Rodentibacter heylii
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
94.77
environmental medium
feces
geographic location (latitude)
23.12
scientific_name
Rodentibacter heylii
common name
investigation type
metagenome-assembled genome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
The gut microbiome of the mice infected by RV and healthy control raw sequence reads
sequencing method
Illumina HiSeq 2000
isolation_source
mouse gut metagenome
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06