bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR5927705 of study SRP115267.
assembly software
metaSPAdes
broad-scale environmental context
mouse digestive system
collection date
2011-09-13
sample derived from
SAMN06921549
geographic location (longitude)
-122.39419
binning parameters
default
contamination score
3.69
ENA-FIRST-PUBLIC
2023-03-06T04:22:02Z
ENA-LAST-UPDATE
2023-03-06T04:22:02Z
completeness software
CheckM
geographic location (country and/or sea)
USA
binning software
metabat2
organism
unclassified eubacterium
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
90.23
environmental medium
feces
geographic location (latitude)
37.767815
scientific_name
unclassified eubacterium
common name
investigation type
metagenome-assembled genome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice
sequencing method
Illumina HiSeq 2000
isolation_source
mouse gut metagenome
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06