bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR2167616 of study SRP062461.
assembly software
metaSPAdes
broad-scale environmental context
mouse digestive system
collection date
2014-07-29
sample derived from
SAMN03996088
geographic location (longitude)
114.1826
binning parameters
default
contamination score
0.67
ENA-FIRST-PUBLIC
2023-03-06T04:21:51Z
ENA-LAST-UPDATE
2023-03-06T04:21:51Z
completeness software
CheckM
geographic location (country and/or sea)
Hong Kong
binning software
metabat2
organism
unclassified eubacterium
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
94.85
environmental medium
feces
geographic location (latitude)
22.3356
scientific_name
unclassified eubacterium
common name
investigation type
metagenome-assembled genome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Metagenomic data from ApcMin/+ mice treated with probiotic LGG
sequencing method
Illumina HiSeq 1500
isolation_source
mouse gut metagenome
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06