Limosilactobacillus reuteri
This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR982821 of study ERP011540.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112717606
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T00:25:40Z
INSDC last update
2023-03-06T00:25:40Z
INSDC status
public
Submitter Id
extra-ERR982821.45_1677760479
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2011-01-01
completeness score
99.46
completeness software
CheckM
contamination score
0.0
environmental medium
feces
geographic location (country and/or sea)
Denmark
geographic location (latitude)
55.676098
geographic location (longitude)
12.568337
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
High fat feeding rather than obesity drives taxonomical and functional changes in the gut microbiota in mice
sample derived from
SAMEA3504111
sample name
extra-ERR982821.45_1677760479
scientific_name
Limosilactobacillus reuteri
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach