Enterococcus faecalis
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR18825446 of study SRP371197.
ENA-FIRST-PUBLIC
2022-10-27
ENA-LAST-UPDATE
2022-10-27
External Id
SAMEA111520031
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2022-10-27T00:21:37Z
INSDC last update
2022-10-27T00:21:37Z
INSDC status
public
Submitter Id
SRR18825446_bin.4_metawrap_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
metawrap v1.3
broad-scale environmental context
mouse digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2020-01-01
completeness score
99.63
completeness software
CheckM
contamination score
0.0
environmental medium
feces
geographic location (country and/or sea)
Ireland
geographic location (latitude)
53.4129
geographic location (longitude)
-8.2439
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
digestive tube
metagenomic source
mouse gut metagenome
project name
Impact of a phage cocktail targeting Escherichia coli and Enterococcus faecalis as members of a gut bacterial consortium in vitro and in vivo
sample derived from
SAMN27646424
sample name
SRR18825446_bin.4_metawrap_v1.3_MAG
sequencing method
Illumina NovaSeq 6000
taxonomic classification
The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecalis
taxonomic identity marker
multi-marker approach