Muribaculaceae bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR2174321 of study SRP062583.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112724822
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:22:12Z
INSDC last update
2023-03-06T04:22:12Z
INSDC status
public
Submitter Id
extra-SRR2174321.30_1677795960
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2014-01-08
completeness score
70.69
completeness software
CheckM
contamination score
5.17
environmental medium
feces
geographic location (country and/or sea)
Hong Kong
geographic location (latitude)
22.267265
geographic location (longitude)
114.12908
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Metagenomic study of the effect of probiotics on hepatocellular tumor growth in mice
sample derived from
SAMN04000098
sample name
extra-SRR2174321.30_1677795960
scientific_name
Muribaculaceae bacterium
sequencing method
Illumina HiSeq 1500
taxonomic identity marker
multi-marker approach