Bos taurus
Protocols: To identify expression quantitative trait loci (eQTL) in Hanwoo cattle, 32 animals were provided by the Hanwoo cattle Research institute, National Institute of Animal Science, South Korea. For RNA-sequencing, tissue samples, such as Abdominal Fat (ABF), Back Fat (BFT) and Kidney Fat (KIF) were collected from the castrated Hanwoo cattle after slaughtering at 10~26 months of age. Ethics approval was obtained from the National Institute of Animal Science (approval no: NIAS20201979). Total RNA was extracted from the trachea with TRIzol Reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's protocol. RNA concentration was checked using a NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies, USA). Individual libraries were generated using Illumina TruSeq™ RNA Sample Preparation Kit (Illumina, San Diego, CA, USA).
ENA first public
2024-03-21
External Id
SAMEA114501075
INSDC center name
Gyeongsang National University Animal Genomics Laboratory
INSDC last update
2023-10-16T16:10:00Z
INSDC status
public
Submitter Id
E-MTAB-13398:192019
age
22
body weight
481
broker name
ArrayExpress
collection date
not collected
common name
cattle
geographic location (country and/or sea)
not collected
isolate
not applicable
organism part
Abdominal fat; Back fat; Kidney fat
phenotype
control
sample name
E-MTAB-13398:192019
scientific_name
Bos taurus
sex
castrated male
strain
Hanwoo cattle (Korean native cattle)