Porphyromonadaceae bacterium UBA3276
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR5574521 of study SRP107170.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112725713
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:22:15Z
INSDC last update
2023-03-06T04:22:15Z
INSDC status
public
Submitter Id
extra-SRR5574521.56_1677796847
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2016-01-25
completeness score
94.0
completeness software
CheckM
contamination score
1.45
environmental medium
feces
geographic location (country and/or sea)
China
geographic location (latitude)
32.15
geographic location (longitude)
118.78
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
mouse gut metagenome Raw sequence reads
sample derived from
SAMN07138969
sample name
extra-SRR5574521.56_1677796847
scientific_name
Porphyromonadaceae bacterium UBA3276
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach