Bacteroidales bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR2174317 of study SRP062583.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112724773
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:22:00Z
INSDC last update
2023-03-06T04:22:00Z
INSDC status
public
Submitter Id
extra-SRR2174317.47_1677795941
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2014-02-15
completeness score
79.16
completeness software
CheckM
contamination score
1.59
environmental medium
feces
geographic location (country and/or sea)
Hong Kong
geographic location (latitude)
22.267265
geographic location (longitude)
114.12908
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Metagenomic study of the effect of probiotics on hepatocellular tumor growth in mice
sample derived from
SAMN04000095
sample name
extra-SRR2174317.47_1677795941
scientific_name
Bacteroidales bacterium
sequencing method
Illumina HiSeq 1500
taxonomic identity marker
multi-marker approach