chicken gut metagenome
Chicken gut metagenomic data from Caecum content; animal CB09.10 from cage CB09 with treatment CO
ENA-FIRST-PUBLIC
2023-03-22
ENA-LAST-UPDATE
2023-03-22
External Id
SAMEA10454441
INSDC center alias
UNIVERSITY OF COPENHAGEN
INSDC center name
UNIVERSITY OF COPENHAGEN
INSDC first public
2023-03-22T12:22:02Z
INSDC last update
2023-03-22T12:22:02Z
INSDC status
public
Submitter Id
CB09_10F1a_EC_metaG
adapters
AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;AAGTCGGATCGTAGCCATGTCGTTC
collection date
2019-05-21
common name
Chicken Gut Metagenome
geographic location (country and/or sea)
Spain
geographic location (latitude)
41.170047
geographic location (longitude)
1.168491
geographic location (region and locality)
El Morell; Tarragona
host body site
Caecum content
host breed
Ross
host common name
Chicken
host diet treatment
Probiotic
host disease status
Campylobacter:-;Salmonella:-;Clostridium:-
host scientific name
Gallus gallus
host sex
male
host storage container temperature
21
host subject id
CB09.10
host taxid
9031
host total mass
996.8
library name
BEMT
library selection
PCR
nucleic acid extraction
D-rex protocol
project name
HoloFood Chicken - Extreme Chicken
reference host genome for decontamination
GCF_000002315.6
sample name
CB09_10F1a_EC_metaG
sample storage buffer
Shield
sample storage container
E-matrix 2ml
sample storage location
UCPH
sample storage temperature
-20
sample volume or weight for DNA extraction
0.2
scientific_name
chicken gut metagenome
sequencing method
MGISEQ-2000
trial length
35
trial timepoint
21