bacterium RGF134-1
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR2665308 of study SRP064880.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112724857
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:21:55Z
INSDC last update
2023-03-06T04:21:55Z
INSDC status
public
Submitter Id
extra-SRR2665308.9_1677795970
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2014-03-01
completeness score
66.67
completeness software
CheckM
contamination score
0.0
environmental medium
feces
geographic location (country and/or sea)
China
geographic location (latitude)
23.12
geographic location (longitude)
113.18
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
The gut microbiome of the mice infected by RV and healthy control raw sequence reads
sample derived from
SAMN04169172
sample name
extra-SRR2665308.9_1677795970
scientific_name
bacterium RGF134-1
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach