Porphyromonadaceae bacterium UBA3317
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR2167615 of study SRP062461.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112724576
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:22:07Z
INSDC last update
2023-03-06T04:22:07Z
INSDC status
public
Submitter Id
extra-SRR2167615.40_1677795857
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2014-06-04
completeness score
84.37
completeness software
CheckM
contamination score
5.06
environmental medium
feces
geographic location (country and/or sea)
Hong Kong
geographic location (latitude)
22.3356
geographic location (longitude)
114.1826
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Metagenomic data from ApcMin/+ mice treated with probiotic LGG
sample derived from
SAMN03996087
sample name
extra-SRR2167615.40_1677795857
scientific_name
Porphyromonadaceae bacterium UBA3317
sequencing method
Illumina HiSeq 1500
taxonomic identity marker
multi-marker approach