wastewater metagenome
collection_date
2021-12-27
geo_loc_name
USA: Colorado, Larimer, county
isolation_source
wastewater
collection_site_id
UTEP
project_name
SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads
collected_by
CDPHE
purpose_of_ww_sampling
public health surveillance community-level
ww_sample_site
wastewater treatment plant
ww_flow
0.992
instantaneous_flow
NaN
ww_population
5818
ww_population_source
census blocks clipped to wastewater service area polygon
ww_sample_matrix
raw wastewater
ww_sample_type
composite
ww_sample_duration
24 hours
concentration_method
innovaprep ultrafiltration
extraction_method
qiagen EZ1 RNA extraction kit
extraction_control
MHV
ww_surv_target_1
SARS-CoV-2
ww_surv_target_1_known_present
no
ww_surv_target_1_conc
765000.0
ww_surv_target_1_conc_unit
copies/L
ww_surv_target_1_gene
CDC N2 primers
purpose_of_ww_sequencing
diversity of mutations across entire genome
sequenced_by
CDPHE
ww_surv_system_sample_id
UTEP20211227
BioSampleModel
SARS-CoV-2: wastewater surveillance