Candidatus Gastranaerophilales bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR5580762 of study SRP107632.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112725841
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:22:18Z
INSDC last update
2023-03-06T04:22:18Z
INSDC status
public
Submitter Id
extra-SRR5580762.167_1677796932
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2014-11-15
completeness score
92.31
completeness software
CheckM
contamination score
1.14
environmental medium
feces
geographic location (country and/or sea)
Austria
geographic location (latitude)
48.2
geographic location (longitude)
16.37
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Mouse cecum microbial communities from Vienna, Austria - Inoculum for glucosamine and mucus D2O microcosms metagenome
sample derived from
SAMN06343880
sample name
extra-SRR5580762.167_1677796932
scientific_name
Candidatus Gastranaerophilales bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach