Alistipes sp. dk3624
ENA-FIRST-PUBLIC
2023-11-07T00:47:16Z
ENA-LAST-UPDATE
2023-11-07T00:47:16Z
External Id
SAMEA114581890
INSDC center name
ICMB
INSDC first public
2023-11-07T00:47:16Z
INSDC last update
2023-11-07T00:47:16Z
INSDC status
public
Submitter Id
E07182-L1_cleanbin_000028
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
spades
binning parameters
refined binning from maxbin2 metabat2 vamb and concoct
binning software
MAGSCoT
broad-scale environmental context
hominid body
collection date
2012/2013
completeness score
97.5
completeness software
MAGSCoT
contamination score
1.666666667
contamination software
MAGSCoT
environmental medium
feces
geographic location (country and/or sea)
Denmark
geographic location (latitude)
not collected
geographic location (longitude)
not collected
investigation type
metagenome-assembled genome
isolation_source
Feces of Homo sapiens (DK)
local environmental context
hominid gut
metagenomic source
Human gut
sample derived from
SAMN10093313
sample name
E07182-L1_cleanbin_000028
scientific_name
Alistipes sp. dk3624
taxonomic classification
gtdtbk
taxonomic identity marker
gtdtbtk marker gene sets