uncultured Candidatus Saccharibacteria bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR2136576 of study ERP104415.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112719510
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:22:15Z
INSDC last update
2023-03-06T04:22:15Z
INSDC status
public
Submitter Id
extra-ERR2136576.18_1677762984
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
not provided
completeness score
51.87
completeness software
CheckM
contamination score
0.0
environmental medium
feces
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Bacterial and virus like particle (VLP) metagenomics of experimental colitis in mice.
sample derived from
SAMEA104313023
sample name
extra-ERR2136576.18_1677762984
scientific_name
uncultured Candidatus Saccharibacteria bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach