uncultured Muribaculaceae bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR4116659 of study SRP084038.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112719737
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:21:51Z
INSDC last update
2023-03-06T04:21:51Z
INSDC status
public
Submitter Id
extra-SRR4116659.3_1677764531
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
not provided
completeness score
99.06
completeness software
CheckM
contamination score
1.26
environmental medium
feces
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
mouse gut metagenome Metagenome
sample derived from
SAMN05717382
sample name
extra-SRR4116659.3_1677764531
scientific_name
uncultured Muribaculaceae bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach