uncultured Lachnospiraceae bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR1806393 of study ERP016823.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112718086
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T04:21:47Z
INSDC last update
2023-03-06T04:21:47Z
INSDC status
public
Submitter Id
extra-ERR1806393.8_1677761274
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2016-01-01
completeness score
62.21
completeness software
CheckM
contamination score
0.64
environmental medium
feces
geographic location (country and/or sea)
USA
geographic location (latitude)
43.0766
geographic location (longitude)
-89.4125
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Host genotype and gut microbiome modulate insulin secretion and diet-induced metabolic phenotypes
sample derived from
SAMEA51452668
sample name
extra-ERR1806393.8_1677761274
scientific_name
uncultured Lachnospiraceae bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach