chicken gut metagenome
Chicken gut metagenomic data from Caecum content; animal CA04.13 from cage CA04 with treatment CC
ENA-FIRST-PUBLIC
2023-03-22
ENA-LAST-UPDATE
2023-03-22
External Id
SAMEA10104915
INSDC center alias
UNIVERSITY OF COPENHAGEN
INSDC center name
UNIVERSITY OF COPENHAGEN
INSDC first public
2023-03-22T12:21:55Z
INSDC last update
2023-03-22T12:21:55Z
INSDC status
public
Submitter Id
CA04_13F1a_EC_metaG
adapters
AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;AAGTCGGATCGTAGCCATGTCGTTC
collection date
2019-03-11
common name
Chicken Gut Metagenome
geographic location (country and/or sea)
Spain
geographic location (latitude)
41.170047
geographic location (longitude)
1.168491
geographic location (region and locality)
El Morell; Tarragona
host body site
Caecum content
host breed
Cobb
host common name
Chicken
host diet treatment
Control
host disease status
Campylobacter:-;Salmonella:-;Clostridium:-
host scientific name
Gallus gallus
host sex
female
host storage container temperature
21
host subject id
CA04.13
host taxid
9031
host total mass
2018.8
library name
BEMT
library selection
PCR
nucleic acid extraction
D-rex protocol
project name
HoloFood Chicken - Extreme Chicken
reference host genome for decontamination
GCF_000002315.6
sample name
CA04_13F1a_EC_metaG
sample storage buffer
Shield
sample storage container
E-matrix 2ml
sample storage location
UCPH
sample storage temperature
-20
sample volume or weight for DNA extraction
0.2
scientific_name
chicken gut metagenome
sequencing method
MGISEQ-2000
trial length
35
trial timepoint
35