Acidimicrobiales bacterium
assembly software
metaMDBG
habitat
semi-dark cave
host scientific name
Spongia officinalis
sample derived from
SAMEA115461022
geographic location (longitude)
5.60
number of standard tRNAs extracted
48
host sex
not applicable
specimen_id
GHC0000180
identified_by
THIERRY PEREZ
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
organism
Acidimicrobiales bacterium
host taxid
252964
scientific_name
Acidimicrobiales bacterium
geographic location (region and locality)
La Ciotat
host life stage
adult
investigation type
metagenome-assembled genome
GAL
Geomar Helmholtz Centre
MAG coverage software
Minimap2 (version 2.24-r1122)
metagenomic source
sponge metagenome
project name
ASG
sequencing method
Pacbio Sequel II
16s recovered
Yes
tolid
odSpoOffi1.Acidimicrobiales_4
broad-scale environmental context
aquatic biome
collection date
2021-03-23
binning parameters
coverage; graph
contamination score
2.14
collected_by
THIERRY PEREZ
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
16S recovery software
PROKKA (version 1.14.5)
relationship
Heterotrophic Microbiome (Mostly)
geographic location (country and/or sea)
France
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
taxonomic identity marker
taxonomic classification defined by topology and ANI
completeness score
96.58
environmental medium
adult sponge tissue
geographic location (latitude)
43.16
common name
commercial sponge
organism part
WHOLE ORGANISM
GAL_sample_id
NOT PROVIDED
identifier_affiliation
CNRS
specimen_voucher
NOT PROVIDED
local environmental context
marine benthic biome
depth
10-15
collecting institution
CNRS
isolation_source
Sponge: Spongia officinalis