Atopobiaceae bacterium
This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR6216943 of study SRP121458.
ENA-FIRST-PUBLIC
2023-03-06
ENA-LAST-UPDATE
2023-03-06
External Id
SAMEA112728791
INSDC center alias
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public
2023-03-06T00:24:59Z
INSDC last update
2023-03-06T00:24:59Z
INSDC status
public
Submitter Id
extra-SRR6216943.5_1677799357
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit
binning parameters
default
binning software
metabat2
broad-scale environmental context
mouse digestive system
collection date
2016-10-25
completeness score
93.55
completeness software
CheckM
contamination score
0.0
environmental medium
feces
geographic location (country and/or sea)
USA
geographic location (latitude)
42.282063
geographic location (longitude)
-83.73404
investigation type
metagenome-assembled genome
isolation_source
mouse gut metagenome
local environmental context
mouse gut
metagenomic source
mouse gut metagenome
project name
Metagenomes and Metatransciptomes from C. difficile infected murine cecal content
sample derived from
SAMN07821425
sample name
extra-SRR6216943.5_1677799357
scientific_name
Atopobiaceae bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach