CDC Sars CoV2 Sequencing Baseline Constellation
Severe acute respiratory syndrome coronavirus 2
Isolate
SARS-CoV-2/Human/USA/MN-CDC-VSX-A00694/2023
collected_by
Helix
collection_date
2023-03-14
isolation_source
swab
geo_loc_name
USA: Minnesota
host
Homo sapiens
host_disease
COVID-19
host_sex
male
host_age
43
host_race
White
collection_device
Swab
collection_method
Swab
purpose_of_sequencing
baseline surveillance (random sampling)
diagnostic_gene_name_1
N
diagnostic_pcr_protocol_1
Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_1
Unknown
diagnostic_gene_name_2
ORF1ab
diagnostic_pcr_protocol_2
Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_2
Unknown
diagnostic_gene_name_3
S
diagnostic_pcr_protocol_3
Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_3
Unknown
lineage/clade name
BQ.1.1.41
BioSampleModel
SARS-CoV-2: clinical or host-associated