National SARS-CoV-2 Surveillance
Severe acute respiratory syndrome coronavirus 2
Isolate
SARS-CoV-2/Human/USA/SD-CDC-2-7216129/2023
collected_by
SD Public Health Laboratory
collection_date
2023-07-15
isolation_source
nasopharyngeal swab
geo_loc_name
USA: South Dakota
host
Homo sapiens
host_disease
COVID-19
host_sex
female
host_age
Unknown
host_race
Unknown
collection_device
Nasopharyngeal swab
collection_method
Nasopharyngeal swab
purpose_of_sequencing
baseline surveillance (random sampling)
diagnostic_gene_name_1
N
diagnostic_pcr_protocol_1
Swift Primers V2
diagnostic_pcr_Ct_value_1
Unknown
lineage/clade name
XBB.1.5
BioSampleModel
SARS-CoV-2: clinical or host-associated