LakePulse MAG SAP_bin533
metagenome
ENA-FIRST-PUBLIC
2023-11-27T00:32:40Z
ENA-LAST-UPDATE
2023-11-27T00:32:40Z
External Id
SAMEA114725103
INSDC center name
Centre for Structural and Functional Genomics
INSDC first public
2023-11-27T00:32:40Z
INSDC last update
2023-11-27T00:32:40Z
INSDC status
public
Submitter Id
SAP_bin533
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT
binning parameters
Tetranucleotide frequency and contig differential coverage
binning software
MetaBAT
broad-scale environmental context
lake
collection date
2018
completeness score
85.8
completeness software
CheckM
contamination score
8.92
environmental medium
water
geographic location (country and/or sea)
Canada
geographic location (latitude)
missing: synthetic construct
geographic location (longitude)
missing: synthetic construct
geographic location (region and locality)
Semi-Arid Plateaux ecozone
isolation_source
lake water
local environmental context
lake surface water
metagenomic source
lake water metagenome
project name
The LakePulse Metagenome-Assembled Genome catalogue
sample derived from
ERS5372593,ERS5372594,ERS5372595,ERS5372596,ERS5372597,ERS5372598,ERS5372599,ERS5372600,ERS5372601,ERS5372602,ERS5372603,ERS5372604,ERS5372605,ERS5372606,ERS5372607,ERS5372608,ERS5372609,ERS5372610,ERS5372611,ERS5372612,ERS5372613
sample name
SAP_bin533
scientific_name
metagenome
taxonomic identity marker
120 bacterial markers (Genome Taxonomy Database)