1c87dfd9-41ac-43dd-858f-547ae4f9b843-asg-bin.54
Endozoicomonas atrinae
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-11-27T10:29:52Z
ENA-LAST-UPDATE
2023-11-27T10:29:52Z
External Id
SAMEA114745643
GAL
Portland State University
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC first public
2023-11-27T10:29:52Z
INSDC last update
2023-11-27T10:29:52Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
1c87dfd9-41ac-43dd-858f-547ae4f9b843
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
barcoding center
PORTLAND STATE UNIVERSITY
binning parameters
coverage; graph
binning software
MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
NOT COLLECTED
collecting institution
Kamo Aquarium | Tsuruoka | Japan
collection date
2021-10-17
completeness score
98.99
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
5.03
environmental medium
adult jellyfish tissue
geographic location (country and/or sea)
Japan
geographic location (latitude)
not collected
geographic location (longitude)
not collected
geographic location (region and locality)
Tsuruoka | Kamo Aquarium
habitat
NOT COLLECTED
host life stage
juvenile
host scientific name
Netrostoma setouchianum
host sex
not collected
host taxid
2929759
identified_by
IKEDA SHUHEI
identifier_affiliation
Kamo Aquarium | Tsuruoka | Japan
investigation type
metagenome-assembled genome
isolation_source
Jellyfish: Netrostoma setouchianum
local environmental context
nan
metagenomic source
jellyfish metagenome
number of standard tRNAs extracted
88
organism part
WHOLE ORGANISM
original collection date
2013-09-20
original collection location
Takeshima | Hiroshima | Japan
project name
ASG
sample collection device or method
NOT COLLECTED
sample derived from
SAMEA114745642
sample name
1c87dfd9-41ac-43dd-858f-547ae4f9b843
scientific_name
Endozoicomonas atrinae
sequencing method
Pacbio Sequel II
specimen_id
PORT0000207
specimen_voucher
KNS＿B
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
jsNetSeto2.Endozoicomonas_atrinae_1