00776183-2a00-4990-947f-3679805684bc-asg-MAGScoT_cleanbin_000004
Rhodococcus qingshengii
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-11-27T09:33:46Z
ENA-LAST-UPDATE
2023-11-27T09:33:46Z
External Id
SAMEA114745598
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC first public
2023-11-27T09:33:46Z
INSDC last update
2023-11-27T09:33:46Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
00776183-2a00-4990-947f-3679805684bc
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
broad-scale environmental context
aquatic biome
collected by
Manuel Maldonado
collecting institution
CEAB-CSIC
collection date
2021-02-01
completeness score
59.38
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0
depth
14
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Spain
geographic location (latitude)
41.67
geographic location (longitude)
2.80
geographic location (region and locality)
Girona|Blanes
habitat
rocky bottom
host life stage
adult
host scientific name
Dysidea avara
host taxid
196820
identified by
Manuel Maldonado
identifier_affiliation
CEAB-CSIC
investigation type
metagenome-assembled genome
isolation_source
Sponge: Dysidea avara
local environmental context
marine benthic biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
35
organism part
WHOLE ORGANISM
project name
ASG
relationship
beneficial
sample derived from
SAMEA114745597
sample name
00776183-2a00-4990-947f-3679805684bc
scientific_name
Rhodococcus qingshengii
sequencing method
Pacbio Sequel II
specimen id
GHC0000191
specimen voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
odDysAvar1.Rhodococcus_qingshengii_1