8105ecdf-0fb0-4a10-b2e7-3f4dba444f08-asg-MAGScoT_cleanbin_000002
Roseibium alexandrii
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-11-27T09:43:17Z
ENA-LAST-UPDATE
2023-11-27T09:43:17Z
External Id
SAMEA114745603
GAL
Dalhousie University
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC first public
2023-11-27T09:43:17Z
INSDC last update
2023-11-27T09:43:17Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
8105ecdf-0fb0-4a10-b2e7-3f4dba444f08
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7)
broad-scale environmental context
aquatic biome
collected by
LUCIE GALLOT-LAVALLEE
collecting institution
DALHOUSIE UNIVERSITY
collection date
2021-05-04
completeness score
99.68
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
1.27
culture_or_strain_id
CCAP 1560/4
environmental medium
amoeba culture
geographic location (country and/or sea)
Canada
geographic location (latitude)
44.64
geographic location (longitude)
-63.58
geographic location (region and locality)
HALIFAX | DALHOUSIE UNIVERSITY
habitat
Dalhousie University laboratory
host scientific name
Paramoeba pemaquidensis
host taxid
180228
identified by
Culture Collection of Algae and Protozoa
identifier_affiliation
Culture Collection of Algae and Protozoa
investigation type
metagenome-assembled genome
isolation_source
Amoeba: Paramoeba pemaquidensis
local environmental context
marine biome
metagenomic source
protist metagenome
number of standard tRNAs extracted
58
organism part
WHOLE ORGANISM
project name
ToL
sample derived from
SAMEA114745600
sample name
8105ecdf-0fb0-4a10-b2e7-3f4dba444f08
scientific_name
Roseibium alexandrii
sequencing method
Pacbio Sequel II
specimen id
DU0000003
specimen voucher
DU0000003-1.png
symbiont
N
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
paParPema1.Roseibium_alexandrii_1