Human gut SPMP69_bin.38 uncultured Bifidobacterium sp.
uncultured Bifidobacterium sp.
ENA-FIRST-PUBLIC
2022-09-21
ENA-LAST-UPDATE
2022-09-21
External Id
SAMEA111370594
INSDC center alias
GENOME INSTITUTE OF SINGAPORE
INSDC center name
GENOME INSTITUTE OF SINGAPORE
INSDC first public
2022-09-21T08:34:40Z
INSDC last update
2022-09-21T08:34:40Z
INSDC status
public
Submitter Id
SPMP69_bin.38
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
OPERA-MS;0.9.0
binning parameters
coverage and kmer
binning software
metabat2;2.12.1
broad-scale environmental context
digestive tract environment
collection date
2008
completeness score
91.83
completeness software
CheckM;1.04
contamination score
9.97
environmental medium
human stool
geographic location (country and/or sea)
Singapore
geographic location (latitude)
1.290270
geographic location (longitude)
103.851959
investigation type
metagenome-assembled genome
isolation_source
human gut
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Singapore Platinum Metagenome Project
sample derived from
SAMEA11358334
sample name
SPMP69_bin.38
sequencing method
Illumina HiSeq 4000;Oxford Nanopore MinION
taxonomic classification
GTDBTk;1.4.1
taxonomic identity marker
multi markers approach