5335733b-3aad-4d56-b87d-97cb8737224d-asg-MAGScoT_cleanbin_000003
Lichenihabitans sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-11-27T13:51:53Z
ENA-LAST-UPDATE
2023-11-27T13:51:53Z
External Id
SAMEA114751372
GAL
Sanger Institute
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC first public
2023-11-27T13:51:53Z
INSDC last update
2023-11-27T13:51:53Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
5335733b-3aad-4d56-b87d-97cb8737224d
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
broad-scale environmental context
terrestrial biome
collected_by
Philipp Resl
collecting institution
Institue of Biology, University of Graz, Austria
collection date
2022-05-18
completeness score
88.22
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
3.13
environmental medium
adult lichen tissue
geographic location (country and/or sea)
Austria
geographic location (latitude)
46.74
geographic location (longitude)
15.08
geographic location (region and locality)
Steiermark | Gemeinde Wielfresen | South of Wirtbartl Weg Wiel St. Oswald | ca. 800 m vor Gasthof Wirtbartl | ca. 1300 m a.s.l.
habitat
Mixed forest with Fagus sylvatica, Picea abies and Pinus sylvestris. On side of decaying coniferous tree stump
host life stage
vegetative structure
host scientific name
Cladonia norvegica
host sex
other
host taxid
2873768
identified_by
Philipp Resl
identifier_affiliation
Institue of Biology, University of Graz, Austria
investigation type
metagenome-assembled genome
isolation_source
Lichen: Cladonia norvegica
local environmental context
woodland biome
metagenomic source
lichen metagenome
number of standard tRNAs extracted
53
organism part
WHOLE ORGANISM
project name
ToL
sample derived from
SAMEA114751368
sample name
5335733b-3aad-4d56-b87d-97cb8737224d
scientific_name
Lichenihabitans sp.
sequencing method
Pacbio Sequel II
specimen_id
ERGA PR AT 01
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
ANI
tolid
glClaNorv1.Lichenihabitans_sp_1