Severe acute respiratory syndrome coronavirus 2
collected_by
Sanford Health
collection_date
2022-08-24
geo_loc_name
USA: South Dakota
host
Homo sapiens
host_disease
COVID-19 [MONDO:0100096]
isolate
SARS-CoV-2/human/USA/SMGL_COVSeq_928/2022
isolation_source
clinical
collection_device
Virus Transport Medium [OBI:0002866]
collection_method
Swabbing [GENEPIO:0002117]
purpose_of_sampling
Diagnostic Testing [GENEPIO:0100002]
host_age
8.275
host_sex
female
sars_cov_2_diag_gene_name_1
N (orf9)
sars_cov_2_diag_pcr_ct_value_1
15.599
sars_cov_2_diag_gene_name_2
ORF1ab (rep)
sars_cov_2_diag_pcr_ct_value_2
16.314
purpose_of_sequencing
Baseline surveillance (random sampling) [GENEPIO:0100005]
purpose_of_sequencing_details
Determining early introductions and spread
sequenced_by
Sanford Medical Genetics Laboratory
BioSampleModel
SARS-CoV-2: clinical or host-associated