binned metagenome: spire_mag_02456548
Phocaeicola vulgatus
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02456548
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2016-02-01
completeness score
85.97
completeness software
checkm2 0.1.3
contamination score
1.59
environmental medium
stool
geographic location (country and/or sea)
Zimbabwe
geographic location (latitude)
-16.91458300
geographic location (longitude)
31.44517000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Fecal samples were obtained from 116 pre-school children in Zimbabwe, and the DNA content assessed using paired-end sequencing.
sample derived from
SAMN10888531
sample name
spire_mag_02456548
scientific_name
Phocaeicola vulgatus
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach