binned metagenome: spire_mag_01839628
Phocaeicola vulgatus
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_01839628
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2015/2018
completeness score
99.82
completeness software
checkm2 0.1.3
contamination score
0.15
environmental medium
stool
geographic location (country and/or sea)
Canada
geographic location (latitude)
44.63730000
geographic location (longitude)
-63.58420000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Numerous studies have linked shifts in the gut microbiome composition to infection events in various hematological malignances including acute lymphoblastic leukemia (ALL). In order to get a view of the gut microbiome of pediatriac ALL patients we completed both 16S rRNA gene sequencing and metagenomic shotgun sequencing from individuals with ALL being treated at the IWK. Metadata that goes along with these samples will be uploaded with the final publication of our findings on this cohort.
sample derived from
SAMEA4982941
sample name
spire_mag_01839628
scientific_name
Phocaeicola vulgatus
sequencing method
NextSeq 550
taxonomic identity marker
multi-marker approach