binned metagenome: spire_mag_02499269
Bacteroides uniformis
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02499269
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
missing: third party data
completeness score
83.8
completeness software
checkm2 0.1.3
contamination score
1.24
environmental medium
not provided
geographic location (country and/or sea)
not provided
geographic location (latitude)
missing: third party data
geographic location (longitude)
missing: third party data
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Sequencing data for gut metagenomes of 109 Singaporean subjects from the SPMP study. The project includes read data for Illumina, ONT and Hi-C sequencing. Metagenome assembled genomes (MAG) can be found in the "Related ENA Records" section, under "Analysis".
sample derived from
SAMEA11358364
sample name
spire_mag_02499269
scientific_name
Bacteroides uniformis
sequencing method
MinION
taxonomic identity marker
multi-marker approach