binned metagenome: spire_mag_01015538
Bacteroides uniformis
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_01015538
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2014-01
completeness score
64.65
completeness software
checkm2 0.1.3
contamination score
0.5
environmental medium
stool
geographic location (country and/or sea)
Germany
geographic location (latitude)
48.53690000
geographic location (longitude)
9.05360000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Two healthy male volunteers (S1 and S2) were treated with ciprofloxacin for 6 days (500 mg orally twice daily). Stool samples from both participants were collected before treatment (baseline), on day 1, 3 and 6 of treatment as well as 2 and 28 days after treatment. Metagenomic shotgun sequencing was performed with all samples.
sample derived from
SAMEA3506769
sample name
spire_mag_01015538
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach