binned metagenome: spire_mag_00294293
Bacteroides uniformis
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_00294293
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2016-06-08
completeness score
85.19
completeness software
checkm2 0.1.3
contamination score
1.2
environmental medium
rectal swab
geographic location (country and/or sea)
USA
geographic location (latitude)
34.05000000
geographic location (longitude)
-118.24000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Using a multi-omics approach, we identified microbiome-derived</p><p>biochemicals and metagenomic functions associated with progressive hepatic pathology and fibrosis in Latino children (N=241). These findings point to potential therapeutic targets in NASH and hepatic injury.
sample derived from
SAMN09656684
sample name
spire_mag_00294293
scientific_name
Bacteroides uniformis
sequencing method
Illumina MiSeq
taxonomic identity marker
multi-marker approach