Fram Strait/West Spitsbergen Shelf water column MAG - FRAM_WSC20_S25_SRF_bin_42_1
uncultured SAR86 cluster bacterium
ENA-FIRST-PUBLIC
2023-05-01
ENA-LAST-UPDATE
2023-05-01
External Id
SAMEA112743563
INSDC center alias
MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC center name
MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC first public
2023-05-01T00:19:34Z
INSDC last update
2023-05-01T00:19:34Z
INSDC status
public
Submitter Id
FRAM_WSC20_S25_SRF_bin_42_1
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
Flye v2.9.1
binning parameters
Default settings
binning software
Metabat2 v2.15
broad-scale environmental context
marine pelagic biome [ENVO:01000023]
collection date
2020-09-21
completeness score
58.19
completeness software
CheckM v1.2.0
contamination score
0.44
environmental medium
sea water [ENVO:00002149]
geographic location (country and/or sea)
Svalbard
geographic location (latitude)
78.998513
geographic location (longitude)
8.247126
isolation_source
seawater
local environmental context
marine photic zone [ENVO:00000209]
metagenomic source
marine metagenome
project name
FRAM_WSC20 metagenomes
sample derived from
ERS14356889,ERR10947144
sample name
FRAM_WSC20_S25_SRF_bin_42_1
scientific_name
uncultured SAR86 cluster bacterium
taxonomic identity marker
16S rRNA gene and multi-gene marker approach