binned metagenome: spire_mag_02661111
Phocaeicola vulgatus
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02661111
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2010-12/2013-01
completeness score
68.3
completeness software
checkm2 0.1.3
contamination score
0.36
environmental medium
stool
geographic location (country and/or sea)
USA
geographic location (latitude)
39.29000000
geographic location (longitude)
-76.61000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
In order to improve the understanding of microbial dynamics during Fecal Microbiota Transplantation, engraftment and persistence rates of donor and patient bacteria were studied at the strain-level using whole-genome shotgun metagenomic sequencing data from stool donors, recipients and post-FMT patients.
sample derived from
SAMEA7013957
sample name
spire_mag_02661111
scientific_name
Phocaeicola vulgatus
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach