binned metagenome: spire_mag_01632671
Phocaeicola vulgatus
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_01632671
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2014
completeness score
99.99
completeness software
checkm2 0.1.3
contamination score
1.46
environmental medium
stool
geographic location (country and/or sea)
Italy
geographic location (latitude)
46.06670000
geographic location (longitude)
11.11670000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
This is a pilot study whose aim is to assess the feasibility of strain-level tracking of microbiome members shared by mothers and their children.
sample derived from
SAMN05615107
sample name
spire_mag_01632671
scientific_name
Phocaeicola vulgatus
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach