binned metagenome: spire_mag_02762032
Phocaeicola vulgatus
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02762032
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2015-03
completeness score
99.99
completeness software
checkm2 0.1.3
contamination score
0.14
environmental medium
stool
geographic location (country and/or sea)
Australia
geographic location (latitude)
-32.93000000
geographic location (longitude)
151.78000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Study analysed metagenomes derived from fecal samples from 28 individuals with chronic obstructive pulmonary disease (COPD) and 29 healthy controls. Paired metabolomic data was also generated for the same samples.
sample derived from
SAMN12649818
sample name
spire_mag_02762032
scientific_name
Phocaeicola vulgatus
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach