binned metagenome: spire_mag_02633936
Bacteroides uniformis
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02633936
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2016
completeness score
58.91
completeness software
checkm2 0.1.3
contamination score
3.03
environmental medium
stool
geographic location (country and/or sea)
Sweden
geographic location (latitude)
59.85805600
geographic location (longitude)
17.64472200
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
SCAPIS is a prospective population-based study of 30,154 men and women, aged 50–65 years, living in six municipality regions in Sweden. It was designed with the main aim to improve risk prediction and understanding of cardiovascular disease, chronic pulmonary obstructive disease, and related metabolic disorders. After a pilot study in 2012, recruitment was initiated in 2014 and completed in 2018. Individuals were randomly recruited from the population register, with a participation rate of 50%. Fecal samples were obtained for 9,819 participants at SCAPIS-Uppsala and SCAPIS-Malmo. More information can be found at: https://doi.org/10.1111/joim.12384 and https://doi.org/10.1038/s41467-022-33050-0
sample derived from
SAMEA14100739
sample name
spire_mag_02633936
scientific_name
Bacteroides uniformis
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach