binned metagenome: spire_mag_02302483
Bacteroides uniformis
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02302483
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2017
completeness score
72.26
completeness software
checkm2 0.1.3
contamination score
0.22
environmental medium
stool
geographic location (country and/or sea)
South Africa
geographic location (latitude)
-24.82
geographic location (longitude)
31.26
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Shotgun metagenomic sequencing of stool samples from two South African cohorts (rural Bushbuckridge, urban Soweto)
sample derived from
SAMN23441068
sample name
spire_mag_02302483
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach