binned metagenome: spire_mag_02368449
Phocaeicola vulgatus
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02368449
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2011-07
completeness score
72.07
completeness software
checkm2 0.1.3
contamination score
6.66
environmental medium
stool
geographic location (country and/or sea)
Central African Republic
geographic location (latitude)
6.61110000
geographic location (longitude)
20.93940000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Traditional human communities have shown more microbiome similarities with nonhuman primates in comparison to industrialized populations. In this study, we have profiled the fecal metagenomes of BaAka hunter-gatherers and Bantu agriculturalists from Central Africa and compared with the sympatric gorillas across seasons of variable dietary intake to understand this functional convergence.
sample derived from
SAMN15047059
sample name
spire_mag_02368449
scientific_name
Phocaeicola vulgatus
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach