binned metagenome: spire_mag_02367588
Phocaeicola vulgatus
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02367588
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2019
completeness score
76.08
completeness software
checkm2 0.1.3
contamination score
7.33
environmental medium
stool
geographic location (country and/or sea)
Netherlands
geographic location (latitude)
52.13263300
geographic location (longitude)
5.29126600
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Fecal metagenomes were sequenced from individuals with different long term diet habits. The aim of the project is to identify if there are any differences in gut metagenome associated with different long term diet habits and gut resistome.
sample derived from
SAMEA8945685
sample name
spire_mag_02367588
scientific_name
Phocaeicola vulgatus
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach