binned metagenome: spire_mag_02332314
Bacteroides uniformis
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02332314
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2017/2020
completeness score
85.44
completeness software
checkm2 0.1.3
contamination score
0.13
environmental medium
stool
geographic location (country and/or sea)
USA
geographic location (latitude)
42.39000000
geographic location (longitude)
-71.12000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Fecal microbiota transplant is a promising therapy for a variety of conditions, including ulcerative colitis where a third of recipients achieve clinical remission after treatment. Parameters maximizing the effectiveness of the therapy are not yet clear, and it is not known how important the transmission of donor microbes to recipients is. Here we have tested the effects of both antibiotic pretreatment and two modes of maintenance dose delivery, capsules versus enema, in a factorial design with 22 patients.
sample derived from
SAMN19715528
sample name
spire_mag_02332314
scientific_name
Bacteroides uniformis
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach