binned metagenome: spire_mag_01610095
Phocaeicola vulgatus
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_01610095
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
missing: third party data
completeness score
91.76
completeness software
checkm2 0.1.3
contamination score
1.67
environmental medium
stool
geographic location (country and/or sea)
USA
geographic location (latitude)
40.44000000
geographic location (longitude)
-79.99000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Time-series fecal samples for a cohort of premature infants in NICU
sample derived from
SAMN07501297
sample name
spire_mag_01610095
scientific_name
Phocaeicola vulgatus
sequencing method
Illumina HiSeq 3000
taxonomic identity marker
multi-marker approach