binned metagenome: spire_mag_02301111
Phocaeicola vulgatus
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02301111
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2017-10-01
completeness score
99.69
completeness software
checkm2 0.1.3
contamination score
0.09
environmental medium
stool
geographic location (country and/or sea)
South Africa
geographic location (latitude)
-26.25000000
geographic location (longitude)
27.85000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Shotgun metagenomic sequencing of stool samples from two South African cohorts (rural Bushbuckridge, urban Soweto)
sample derived from
SAMN16797133
sample name
spire_mag_02301111
scientific_name
Phocaeicola vulgatus
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach