Oyster_population
Magallana gigas
ENA-FIRST-PUBLIC
2023-03-07
ENA-LAST-UPDATE
2023-03-07
External Id
SAMEA112736027
INSDC center alias
Ifremer
INSDC center name
Ifremer
INSDC first public
2023-03-07T12:21:50Z
INSDC last update
2023-03-07T12:21:50Z
INSDC status
public
LIBRARY_CONSTRUCTION_PROTOCOL
Whole exome capture of bisulfite converted library
Submitter Id
sam_B24_2_199
TARGETED_LOCI
exome
adapters
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCCGTCTTCTGCTTG
age
10-14 month
aquaculture origin
WOWR (Wild Origin Wild Raised)
broker name
Bioinformatics Core Facility of Ifremer (French Research Institute for Exploitation of the Sea)
collection_date
2018-10-01
common name
Pacific oyster
dev_stage
Juvenile
environmental_sample
No
geographic location (country and/or sea)
Atlantic Ocean
geographic location (depth)
2
geographic location (elevation)
0
geographic location (latitude)
48.379364
geographic location (longitude)
-4.446286
geographic location (region and locality)
Rade_de_Brest
health or disease status of specific host
Diseased
host scientific name
not provided
investigation type
eukaryote
isolate
not provided
isolation_source
Rade de brest
multiplex identifiers
CTTGTA
pcr primers
F : 5'-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG-3' ; R : 5'-GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAG-86
phenotype
susceptible
ploidy
diploid
project name
GEM
sample name
sam_B24_2_199
sample_description
susceptible
sample_name
B24_2_199
scientific_name
Crassostrea gigas
sequencing method
Sequencing by synthesis (Illumina)
sex
hermaphrodite
strain
not provided
tissue_type
whole body