binned metagenome: spire_mag_02571474
Phocaeicola vulgatus
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02571474
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2014-06-30
completeness score
58.79
completeness software
checkm2 0.1.3
contamination score
0.04
environmental medium
stool
geographic location (country and/or sea)
not provided
geographic location (latitude)
missing: third party data
geographic location (longitude)
missing: third party data
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
This study aims to use 16S rDNA (and metagenome) sequencing to compare the microbiota composition of ICU patients with CDpD (CDpD group), ICU patients with C. difficile negative diarrhea (CDnD group), and healthy control subjects (control group), as well as CDpD patients in A+B+, A-B+, and A-B- subgroups.
sample derived from
SAMN13351575
sample name
spire_mag_02571474
scientific_name
Phocaeicola vulgatus
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach