binned metagenome: spire_mag_02983513
Phocaeicola vulgatus
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02983513
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2017-10-19
completeness score
86.71
completeness software
checkm2 0.1.3
contamination score
4.29
environmental medium
stool
geographic location (country and/or sea)
South Korea
geographic location (latitude)
0.00000000
geographic location (longitude)
0.00000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
whole metagenomic sequencing for human gut microbiome.
sample derived from
SAMEA6104852
sample name
spire_mag_02983513
scientific_name
Phocaeicola vulgatus
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach