binned metagenome: spire_mag_02760138
Phocaeicola vulgatus
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02760138
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2019-03-13
completeness score
87.87
completeness software
checkm2 0.1.3
contamination score
6.94
environmental medium
stool
geographic location (country and/or sea)
Israel
geographic location (latitude)
32.83304900
geographic location (longitude)
34.98571000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Carbapenemase-producing Enterobacteriaceae (CPE) infections lead to considerable morbidity and mortality. We assessed the potential of fecal microbiota transplantation (FMT) to eradicate CPE carriage and to explain failure or success through microbiome analyses.
sample derived from
SAMN14734836
sample name
spire_mag_02760138
scientific_name
Phocaeicola vulgatus
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach