binned metagenome: spire_mag_02561409
Bacteroides uniformis
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02561409
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
missing: third party data
completeness score
91.3
completeness software
checkm2 0.1.3
contamination score
0.81
environmental medium
stool
geographic location (country and/or sea)
not provided
geographic location (latitude)
missing: third party data
geographic location (longitude)
missing: third party data
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Little is known regarding the changes in antimicrobial resistance (AMR) genes, pathogens, species and functional pathways that occur with fecal transplant, especially with an adult donor to child recipient. Fecal transplant for recurrent Clostridioides difficile infection (CDI) in children causes an overall significant sustained decrease in AMR genes and potential pathogens in addition to species level and functional changes. However certain AMR genes increased post-FMT and low levels of potential pathogens were found in donors.
sample derived from
SAMN11053024
sample name
spire_mag_02561409
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 3000
taxonomic identity marker
multi-marker approach