binned metagenome: spire_mag_02246316
Phocaeicola vulgatus
ENA first public
2024-09-20
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02246316
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2017-03-20
completeness score
90.47
completeness software
checkm2 0.1.3
contamination score
0.22
environmental medium
stool
geographic location (country and/or sea)
China
geographic location (latitude)
22.27000000
geographic location (longitude)
113.46000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
The process that reabsorb calcium and phosphate from the bones instead of keeping these minerals just make our bones weaker, finally reach to the osteoporosis stage . The osteoporosis is a severe and common disease in elderly group, and it is the most common reason for fracture among the aged . Here we</p><p>carried out metagenomic shotgun sequencing to provide a detailed characterization of the compositional and functional features of gut microbiota change withe the bone loss .
sample derived from
SAMN11311473
sample name
spire_mag_02246316
scientific_name
Phocaeicola vulgatus
sequencing method
BGISEQ-500
taxonomic identity marker
multi-marker approach