039cee20-11c1-41d0-9979-20d2ced50fa6-asg-MAGScoT_cleanbin_000004
Brevundimonas sp.
assembly software
metaMDBG
habitat
coral reef
broad-scale environmental context
aquatic biome
host scientific name
Millepora complanata
collection date
2021-05-10
sample derived from
SAMEA115458483
geographic location (longitude)
-67.05
binning parameters
coverage; graph; hic-mapping
contamination score
0.81
collected_by
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ| MARIA DEL PILAR| DANIEL TOLEDO
tRNA extraction software
PROKKA (version 1.14.5)
number of standard tRNAs extracted
46
host sex
not collected
specimen_id
NSU0055102
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
16S recovery software
PROKKA (version 1.14.5)
identified_by
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
geographic location (country and/or sea)
Puerto Rico
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
organism
Brevundimonas sp.
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
taxonomic identity marker
ani_screen
host taxid
544496
completeness score
95.76
environmental medium
adult hydrozoan tissue
geographic location (latitude)
17.96
scientific_name
Brevundimonas sp.
organism part
WHOLE ORGANISM
geographic location (region and locality)
Cayo Enrique
GAL_sample_id
NOT PROVIDED
host life stage
adult
identifier_affiliation
UNIVERSITY OF PUERTO RICO MAYAGUEZ
investigation type
metagenome-assembled genome
specimen_voucher
Sanger Institute Genome PR22
local environmental context
marine coral reef biome
GAL
Nova Southeastern University
MAG coverage software
Minimap2 (version 2.24-r1122)
depth
1.0
metagenomic source
hydrozoan metagenome
project name
ASG
sequencing method
Pacbio Sequel II
16s recovered
Yes
collecting institution
UNIVERSITY OF PUERTO RICO MAYAGUEZ
tolid
jhMilComp2.Brevundimonas_sp_1
isolation_source
Hydrozoan: Millepora complanata