8844cc31-a148-4f08-a839-53100169bf45-asg-bin.237
Francisellaceae bacterium
16S recovered
No
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-11-28T11:58:08Z
ENA-LAST-UPDATE
2023-11-28T11:58:08Z
External Id
SAMEA114757769
GAL
Nova Southeastern University
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC first public
2023-11-28T11:58:08Z
INSDC last update
2023-11-28T11:58:08Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
8844cc31-a148-4f08-a839-53100169bf45
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
binning parameters
coverage; graph
binning software
MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected by
XAVIER BAILLY
collecting institution
Station Biologique de Roscoff / CNRS / France
collection date
2020-12-20
completeness score
30.84
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.0
environmental medium
adult xenacoelomorph tissue
geographic location (country and/or sea)
France
geographic location (latitude)
48.68
geographic location (longitude)
3.93
geographic location (region and locality)
Brittany | Callot Island | Carantec (town)
habitat
interdital marine environment
host life stage
adult
host scientific name
Symsagittifera roscoffensis
host sex
hermaphrodite
host taxid
84072
identified by
XAVIER BAILLY
identifier_affiliation
Station Biologique de Roscoff / CNRS / France
investigation type
metagenome-assembled genome
isolation_source
Xenacoelomorph: Symsagittifera roscoffensis
local environmental context
marine biome
metagenomic source
invertebrate metagenome
number of standard tRNAs extracted
19
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA114757766
sample name
8844cc31-a148-4f08-a839-53100169bf45
scientific_name
Francisellaceae bacterium
sequencing method
Pacbio Sequel II
specimen id
NSU0042505
specimen voucher
NOT COLLECTED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
txSymRosc5.Francisellaceae_1