human metagenome
study_ID_mom
10009
host
Homo sapiens
geographic location
USA
collection date
2020
city
Spencer
state
MA
latitude and longitude
42.24418455 N 71.99035135 W
calpro_ng_mg
101.1815
vaginalsubCST
II
vaginalCST
II
Sequencing_Run
X
CD_UC_HC_diagnosis.x
CD
IBD_group.x
IBD
Total_Grams
NA
Energy
NA
Total_Fat
NA
Total_Carbohydrate
NA
Total_Protein
NA
Animal_Protein
NA
Vegetable_Protein
NA
Alcohol
NA
Cholesterol
NA
Total_Saturated_Fatty_Acids_SFA_
NA
Total_Monounsaturated_Fatty_Acids_MUFA_
NA
Total_Polyunsaturated_Fatty_Acids_PUFA_
NA
Fructose
NA
Galactose
NA
Glucose
NA
Lactose
NA
Maltose
NA
Sucrose
NA
Starch
NA
Total_Dietary_Fiber
NA
Soluble_Dietary_Fiber
NA
Insoluble_Dietary_Fiber
NA
Pectins
NA
Total_Vitamin_A_Activity_International_Units_
NA
Beta_Carotene_Equivalents_derived_from_provitamin_A_carotenoids_
NA
Retinol
NA
Vitamin_D_calciferol_
NA
Total_Alpha_Tocopherol_Equivalents
NA
Vitamin_E_Total_Alpha_Tocopherol_
NA
Beta_Tocopherol
NA
Gamma_Tocopherol
NA
Delta_Tocopherol
NA
Vitamin_K_phylloquinone_
NA
Vitamin_C_ascorbic_acid_
NA
Thiamin_vitamin_B1_
NA
Riboflavin_vitamin_B2_
NA
Niacin_vitamin_B3_
NA
Pantothenic_Acid
NA
Vitamin_B_6_pyridoxine_pyridoxyl_._pyridoxamine_
NA
Total_Folate
NA
Vitamin_B_12_cobalamin_
NA
Calcium
NA
Phosphorus
NA
Magnesium
NA
Iron
NA
Zinc
NA
Copper
NA
Selenium
NA
Sodium
NA
Potassium
NA
SFA_4_0_butyric_acid_
NA
SFA_6_0_caproic_acid_
NA
SFA_8_0_caprylic_acid_
NA
SFA_10_0_capric_acid_
NA
SFA_12_0_lauric_acid_
NA
SFA_14_0_myristic_acid_
NA
SFA_16_0_palmitic_acid_
NA
SFA_17_0_margaric_acid_
NA
SFA_18_0_stearic_acid_
NA
SFA_20_0_arachidic_acid_
NA
SFA_22_0_behenic_acid_
NA
MUFA_14_1_myristoleic_acid_
NA
MUFA_16_1_palmitoleic_acid_
NA
MUFA_18_1_oleic_acid_
NA
MUFA_20_1_gadoleic_acid_
NA
MUFA_22_1_erucic_acid_
NA
PUFA_18_2_linoleic_acid_
NA
PUFA_18_3_linolenic_acid_
NA
PUFA_18_4_parinaric_acid_
NA
PUFA_20_4_arachidonic_acid_
NA
PUFA_20_5_eicosapentaenoic_acid_.EPA._
NA
PUFA_22_5_docosapentaenoic_acid_.DPA._
NA
PUFA_22_6_docosahexaenoic_acid_.DHA._
NA
Tryptophan
NA
Threonine
NA
Isoleucine
NA
Leucine
NA
Lysine
NA
Methionine
NA
Cystine
NA
Phenylalanine
NA
Tyrosine
NA
Valine
NA
Arginine
NA
Histidine
NA
Alanine
NA
Aspartic_Acid
NA
Glutamic_Acid
NA
Glycine
NA
Proline
NA
Serine
NA
Aspartame
NA
Saccharin
NA
Caffeine
NA
Phytic_Acid
NA
Oxalic_Acid
NA
X3_Methylhistidine
NA
Sucrose_Polyester
NA
Ash
NA
Water
NA
perc_Calories_from_Fat
NA
perc_Calories_from_Carbohydrate
NA
perc_Calories_from_Protein
NA
perc_Calories_from_Alcohol
NA
perc_Calories_from_SFA
NA
perc_Calories_from_MUFA
NA
perc_Calories_from_PUFA
NA
Polyunsaturated_to_Saturated_Fat_Ratio
NA
Cholesterol_to_Saturated_Fatty_Acid_Index
NA
Total_Vitamin_A_Activity_Retinol_Equivalents_
NA
TRANS_18_1_trans_octadecenoic_acid_
NA
TRANS_18_2_trans_octadecadienoic_acid_
NA
TRANS_16_1_trans_hexadecenoic_acid_
NA
Total_Trans_Fatty_Acids_TRANS_
NA
User_Nutrient_1
NA
User_Nutrient_2
NA
User_Nutrient_3
NA
User_Nutrient_4
NA
User_Nutrient_5
NA
User_Nutrient_6
NA
User_Nutrient_7
NA
User_Nutrient_8
NA
User_Nutrient_9
NA
User_Nutrient_10
NA
Beta_Carotene_provitamin_A_carotenoid_
NA
Alpha_Carotene_provitamin_A_carotenoid_
NA
Beta_Cryptoxanthin_provitamin_A_carotenoid_
NA
Lutein_._Zeaxanthin
NA
Lycopene
NA
Dietary_Folate_Equivalents
NA
Natural_Folate
NA
Synthetic_Folate
NA
Total_Vitamin_A_Activity_Retinol_Activity_Equivalents_
NA
Energy_kilojoules_
NA
Niacin_Equivalents
NA
Total_Sugars
NA
Omega_3_Fatty_Acids
NA
Manganese
NA
Vitamin_E_International_Units_
NA
Natural_Alpha_Tocopherol_RRR_alpha_tocopherol_or_d_alpha_tocopherol_
NA
Synthetic_Alpha_Tocopherol_all_rac_alpha_tocopherol_or_dl_alpha_tocopherol_
NA
Daidzein
NA
Genistein
NA
Glycitein
NA
Coumestrol
NA
Biochanin_A
NA
Formononetin
NA
Added_Sugars_by_Available_Carbohydrate_
NA
Acesulfame_Potassium
NA
Sucralose
NA
Available_Carbohydrate
NA
Glycemic_Index_glucose_reference_
NA
Glycemic_Index_bread_reference_
NA
Glycemic_Load_glucose_reference_
NA
Glycemic_Load_bread_reference_
NA
Choline
NA
Betaine
NA
Erythritol
NA
Inositol
NA
Isomalt
NA
Lactitol
NA
Maltitol
NA
Mannitol
NA
Pinitol
NA
Sorbitol
NA
Xylitol
NA
Nitrogen
NA
Total_Conjugated_Linoleic_Acid_CLA_18_2_
NA
CLA_cis_9_trans_11
NA
CLA_trans_10_cis_12
NA
Tagatose
NA
Vitamin_D2_ergocalciferol_
NA
Vitamin_D3_cholecalciferol_
NA
Added_Sugars_by_Total_Sugars_
NA
Total_Grains_ounce_equivalents_
NA
Whole_Grains_ounce_equivalents_
NA
Refined_Grains_ounce_equivalents_
NA
PUFA_18_3_n_3_alpha_linolenic_acid_.ALA._
NA
Solid_Fats
NA
Citrus_Juice
NA
Fruit_Juice_excluding_Citrus_Juice
NA
Citrus_Fruit
NA
Fruit_excluding_Citrus_Fruit
NA
Avocado_and_Similar
NA
Fried_Fruits
NA
Fruit_based_Savory_Snack
NA
Dark_green_Vegetables
NA
Deep_yellow_Vegetables
NA
Tomato
NA
White_Potatoes
NA
Fried_Potatoes
NA
Other_Starchy_Vegetables
NA
Legumes_cooked_dried_beans_
NA
Other_Vegetables
NA
Fried_Vegetables
NA
Vegetable_Juice
NA
TOTAL_VEGETABLES_COMPONENT_net_count_Daniela
NA
Vegetable_based_Savory_Snack
NA
Grains_Flour_and_Dry_Mixes_Whole_Grain
NA
Grains_Flour_and_Dry_Mixes_Some_Whole_Grain
NA
Grains_Flour_and_Dry_Mixes_Refined_Grain
NA
Loaf_type_Bread_and_Plain_Rolls_Whole_Grain
NA
Loaf_type_Bread_and_Plain_Rolls_Some_Whole_Grain
NA
Loaf_type_Bread_and_Plain_Rolls_Refined_Grain
NA
Other_Breads_quick_breads_corn_muffins_tortillas_Whole_Grain
NA
Other_Breads_quick_breads_corn_muffins_tortillas_Some_Whole_Grain
NA
Other_Breads_quick_breads_corn_muffins_tortillas_Refined_Grain
NA
Crackers_Whole_Grain
NA
Crackers_Some_Whole_Grain
NA
Crackers_Refined_Grain
NA
Pasta_Whole_Grain
NA
Pasta_Some_Whole_Grain
NA
Pasta_Refined_Grain
NA
Ready_to_eat_Cereal_not_presweetened_Whole_Grain
NA
Ready_to_eat_Cereal_not_presweetened_Some_Whole_Grain
NA
Ready_to_eat_Cereal_not_presweetened_Refined_Grain
NA
Ready_to_eat_Cereal_presweetened_Whole_Grain
NA
Ready_to_eat_Cereal_presweetened_Some_Whole_Grain
NA
Ready_to_eat_Cereal_presweetened_Refined_Grain
NA
Cakes_Cookies_Pies_Pastries_Danish_Doughnuts_and_Cobblers_Whole_Grain
NA
Cakes_Cookies_Pies_Pastries_Danish_Doughnuts_and_Cobblers_Some_Whole_Grai
NA
Cakes_Cookies_Pies_Pastries_Danish_Doughnuts_and_Cobblers_Refined_Grain
NA
Snack_Bars_Whole_Grain
NA
Snack_Bars_Some_Whole_Grain
NA
Snack_Bars_Refined_Grain
NA
Snack_Chips_Whole_Grain
NA
Snack_Chips_Some_Whole_Grain
NA
Snack_Chips_Refined_Grain
NA
Popcorn
NA
Flavored_Popcorn
NA
Baby_Food_Grain_Mixtures_Refined_Grain
NA
Beef
NA
Lean_Beef
NA
Veal
NA
Lean_Veal
NA
Lamb
NA
Lean_Lamb
NA
Fresh_Pork
NA
Lean_Fresh_Pork
NA
Cured_Pork
NA
Lean_Cured_Pork
NA
Game
NA
Poultry
NA
Lean_Poultry
NA
Fried_Chicken_Commercial_Entr_and_Fast_Food
NA
Fish_Fresh_and_Smoked
NA
Lean_Fish_Fresh_and_Smoked
NA
Fried_Fish_Commercial_Entre_and_Fast_Food
NA
Shellfish
NA
Fried_Shellfish_Commercial_Entre_and_Fast_Food
NA
Cold_Cuts_and_Sausage
NA
Lean_Cold_Cuts_and_Sausage
NA
Organ_Meats
NA
Baby_Food_Meat_Mixtures
NA
Meat_based_Savory_Snack
NA
Eggs
NA
Egg_Substitute
NA
Nuts_and_Seeds
NA
Nut_and_Seed_Butters
NA
Meat_Alternatives
NA
Milk_Whole
NA
Milk_Reduced_Fat
NA
Milk_Low_Fat_and_Fat_Free
NA
Milk_Nondairy
NA
Ready_to_drink_Flavored_Milk_Whole
NA
Ready_to_drink_Flavored_Milk_Reduced_Fat
NA
Ready_to_drink_Flavored_Milk_Low_Fat_and_Fat_Free
NA
Sweetened_Flavored_Milk_Beverage_Powder_with_Non_fat_Dry_Milk
NA
Artificially_Sweetened_Flavored_Milk_Beverage_Powder_with_Non_fat_Dry_Milk
NA
Sweetened_Flavored_Milk_Beverage_Powder_without_Non_fat_Dry_Milk
NA
Artificially_Sweetened_Flavored_Milk_Beverage_Powder_without_Non_fat_Dry_Milk
NA
Cheese_Full_Fat
NA
Cheese_Reduced_Fat
NA
Cheese_Low_Fat_and_Fat_Free
NA
Cheese_Nondairy
NA
Yogurt_Sweetened_Whole_Milk
NA
Yogurt_Sweetened_Low_Fat
NA
Yogurt_Sweetened_Fat_Free
NA
Yogurt_Artificially_Sweetened_Whole_Milk
NA
Yogurt_Artificially_Sweetened_Low_Fat
NA
Yogurt_Artificially_Sweetened_Fat_Free
NA
Yogurt_Nondairy
NA
Frozen_Dairy_Dessert
NA
Frozen_Nondairy_Dessert
NA
Pudding_and_Other_Dairy_Dessert
NA
Artificially_Sweetened_Pudding_and_Other_Dairy_Dessert
NA
Cream
NA
Cream_Reduced_Fat
NA
Cream_Low_Fat_and_Fat_Free
NA
Cream_Nondairy
NA
Dairy_based_Sweetened_Meal_Replacement.Supplement
NA
Dairy_based_Artificially_Sweetened_Meal_Replacement.Supplement
NA
Infant_Formula
NA
Infant_Formula_Nondairy
NA
Margarine_Regular
NA
Margarine_Reduced_Fat
NA
Oil
NA
Shortening
NA
Butter_and_Other_Animal_Fats_Regular
NA
Butter_and_Other_Animal_Fats_Reduced_Fat
NA
Salad_Dressing_Regular
NA
Salad_Dressing_Reduced_Fat.Reduced_Calorie.Fat_Free
NA
Sugar
NA
Sugar_Substitute
NA
Syrup_Honey_Jam_Jelly_Preserves
NA
Sauces_Sweet_Regular
NA
Sauces_Sweet_Reduced_Fat.Reduced_Calorie.Fat_Free
NA
Chocolate_Candy
NA
Non_chocolate_Candy
NA
Frosting_or_Glaze
NA
Sweetened_Soft_Drinks
NA
Artificially_Sweetened_Soft_Drinks
NA
Unsweetened_Soft_Drinks
NA
Sweetened_Fruit_Drinks
NA
Artificially_Sweetened_Fruit_Drinks
NA
Sweetened_Tea
NA
Artificially_Sweetened_Tea
NA
Unsweetened_Tea
NA
Sweetened_Coffee
NA
Artificially_Sweetened_Coffee
NA
Unsweetened_Coffee
NA
Sweetened_Coffee_Substitutes
NA
Artificially_Sweetened_Coffee_Substitutes
NA
Unsweetened_Coffee_Substitutes
NA
Sweetened_Water
NA
Artificially_Sweetened_Water
NA
Unsweetened_Water
NA
Nondairy_based_Sweetened_Meal_Replacement.Supplement
NA
Nondairy_based_Artificially_Sweetened_Meal_Replacement.Supplement
NA
Nondairy_based_Unsweetened_Meal_Replacement.Supplement
NA
Non_alcoholic_Beer
NA
Non_alcoholic_Light_Beer
NA
Beer_and_Ales
NA
Cordial_and_Liqueur
NA
Distilled_Liquor
NA
Wine
NA
Gravy_Regular
NA
Gravy_Reduced_Fat.Fat_Free
NA
Sauces_and_Condiments_Regular
NA
Sauces_and_Condiments_Reduced_Fat
NA
Pickled_Foods
NA
Miscellaneous_Dessert
NA
Non_grain_Flour_and_Similar
NA
Soup_Broth
NA
Baby_Food_Dessert
NA
Miscellaneous_Baby_Food_Mixtures
NA
Baby_Food_Grain_Mixtures_Whole_Grain
NA
Baby_Food_Grain_Mixtures_Some_Whole_Grain
NA
HEI_2015_TOTAL_SCORE
NA
Energy.1
NA
total_vegetable_servings_in_cup_equivalents
NA
greens_and_beans_servings_in_cup_equivalents
NA
total_fruit_servings_in_cup_equivalents
NA
whole_fruit_servings_in_cup_equivalents
NA
whole_grain_servings_in_ounce_equivalents
NA
dairy_servings_in_cup_equivalents
NA
total_protein_servings_in_ounce_equivalents
NA
sea_food_and_plant_protein_servings_in_ounce_equivalents
NA
sodium_intake_in_grams
NA
refined_grains_in_ounce_equivalents
NA
kcal_from_added_sugars
NA
HEI_2015_COMPONENT_1_TOTAL_VEGETABLES_0_5_
NA
HEI_2015_COMPONENT_2_GREENS_AND_BEANS_0_5_
NA
HEI_2015_COMPONENT_3_TOTAL_FRUIT_0_5_
NA
HEI_2015_COMPONENT_4_WHOLE_FRUIT_0_5_
NA
HEI_2015_COMPONENT_5_WHOLE_GRAINS_0_10_
NA
HEI_2015_COMPONENT_6_DAIRY_0_10_
NA
HEI_2015_COMPONENT_7_TOTAL_PROTEIN_FOODS_0_5_
NA
HEI_2015_COMPONENT_8_SEAFOOD_AND_PLANT_PROTEIN_0_5_
NA
HEI_2015_COMPONENT_9_FATTY_ACID_RATIO_0_10_
NA
HEI_2010_COMPONENT_10_SODIUM_0_10_
NA
HEI_2015_COMPONENT_11_REFINED_GRAINS_0_10_
NA
HEI_2015_COMPONENT_12_ADDED_SUGARS_0_10_
NA
HEI_2015_COMPONENT_13_SATURATED_FATS_0_10_
NA
total_vegetable_servings_in_cup_equivalents_PER_1000_KCAL
NA
greens_and_beans_servings_in_cup_equivalents_PER_1000_KCAL
NA
total_fruit_servings_in_cup_equivalents_PER_1000_KCAL
NA
whole_fruit_servings_in_cup_equivalents_PER_1000_KCAL
NA
whole_grain_servings_in_ounce_equivalents_PER_1000_KCAL
NA
dairy_servings_in_cup_equivalents_PER_1000_KCAL
NA
protein_servings_in_ounce_equivalents_PER_1000_KCAL
NA
sea_food_and_plant_protein_servings_in_ounce_equivalents_PER_1000_KCAL
NA
fatty_acid_ratio
NA
sodium_intake_in_grams_PER_1000_KCAL
NA
refined_grains_in_ounce_equivalents_PER_1000_KCAL
NA
percent_kcal_from_added_sugars
NA
percent_saturated_fatty_acids
NA
AHEI_10_Score_0_110_
NA
Birthweight_pounds
7.56
Birthweight_g
3429.156
Preterm
No
Delivery_mode
vaginal
study_arm.y
Arm1
study_group.y
IBD_IBD_AID
CD_UC_HC_diagnosis.y
CD
IBD_group.y
IBD
Age
35
BMI
27.5
BMI_category_who
Overweight
Race
White
Hispanic_or_Latino_descent
No
Current_smoking_status
Non_smoker
alcohol_during_pregnancy
No
alcohol_but_not_during_pregnancy
Yes
recreational_drugs_during_preg
No
general_health_status
Very_good
marital_status
Married
people_living_in_your_household
3
highest_education
Bachelor_degree
annual_gross_household_income
NA
Psoriasis
No
Lupus
No
Rheumatoid_Arthritis
No
Chronic_intestinal_disease_controls_only
NA
High_blood_pressure
No
Autoimmune_Disorders_not_IBD
Yes
All_diasease_names
NA
Other_diseases
No
If_other_disease_please_specify
NA
Do_you_have_diarrhea
NA
Do_you_have_constipation
NA
current_illness_or_infection
No
Age_at_Diagnosis
A2
Disease_location
L3_ileocolonic
Behaviour
B2_stricturing
Perianal_disease
No
Previous_surgery_for_IBD
Yes
HBI_Score
remission
Have_you_had_any_recent_flare_ups
No
Gestational_week_of_the_flare
NA
IBD_general_name
No
IBD_Meds
No
Probiotics
No
Prenatal_Vitamins
Yes
Vitamin_or_Supplement
Yes
vitamin_name
vitamin_supplement_type_B_12_vitamin_supplement_type_Iron
Non_IBD_Meds
NA
antibiotic_currently
No
antibiotics_in_the_last_year
No
antibiotic_name
No
antibiotic_during_pregnancy
No
antibiotic_currently_or_during_pregnancy
No
Gestational_weeks_of_antibiotics1
NA
special_diets
NA
Pregnancies
2
children_have_you_given_birth_to
1
miscarriages_or_abortions
0
Gestational_age_at_enrollment_weeks
27
Fertility_medications
No
Intrauterine_insemination
No
In_vitro_fertilization
No
Diabetes_pregnancy_related
No
Hypertension_pregnancy_related
No
BioSampleModel
Metagenome or environmental