b44e6b4e-9bec-4393-bb0d-dcec7bdc171f-asg-MAGScoT_cleanbin_000014
Terriglobus sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA first public
2021-04-21
ENA last update
2021-04-21
ENA-FIRST-PUBLIC
2023-11-28T17:45:05Z
ENA-LAST-UPDATE
2023-11-28T17:45:05Z
External Id
SAMEA114765686
GAL
Royal Botanic Garden Edinburgh
GAL_sample_id
NOT PROVIDED
INSDC center alias
EarlhamInstitute
INSDC center name
Tree of Life Programme
INSDC first public
2023-11-28T17:45:05Z
INSDC last update
2023-11-28T17:45:05Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
b44e6b4e-9bec-4393-bb0d-dcec7bdc171f
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
broad-scale environmental context
temperate biome
broker name
Collaborative Open Plant Omics broker account, Earlham Institute, Norwich
collected by
REBECCA YAHR
collecting institution
ROYAL BOTANIC GARDEN EDINBURGH
collection date
2021-04-02
completeness score
81.25
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
7.95
elevation
80
environmental medium
adult lichen tissue
geographic location (country and/or sea)
United Kingdom
geographic location (elevation)
80
geographic location (latitude)
56.02
geographic location (longitude)
-4.99
geographic location (region and locality)
Argyllshire | Benmore Botanic Garden | Mixed conifer arboretum in mesic floodplain.
habitat
Twigs of spruce at edge of glade in floodplain.
host life stage
vegetative structure
host scientific name
Platismatia glauca
host sex
other
host taxid
78070
identified by
REBECCA YAHR
identifier_affiliation
ROYAL BOTANIC GARDEN EDINBURGH
investigation type
metagenome-assembled genome
isolation_source
Lichen: Platismatia glauca
lifestage
vegetative structure
local environmental context
temperate woodland biome
metagenomic source
lichen metagenome
number of standard tRNAs extracted
51
organism part
WHOLE ORGANISM
project name
DTOL
sample derived from
SAMEA114765683
sample name
b44e6b4e-9bec-4393-bb0d-dcec7bdc171f
scientific_name
Terriglobus sp.
sequencing method
Pacbio Sequel II
sex
ASEXUAL MORPH
specimen id
EDTOL00467
specimen voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
glPlaGlau9.Terriglobus_sp_1