b99afbb7-6f01-4ef3-93d9-330d60780bea-asg-maxbin2.017
Rhizobiaceae bacterium
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-11-28T09:30:07Z
ENA-LAST-UPDATE
2023-11-28T09:30:07Z
External Id
SAMEA114757180
GAL
Nova Southeastern University
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC first public
2023-11-28T09:30:07Z
INSDC last update
2023-11-28T09:30:07Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
b99afbb7-6f01-4ef3-93d9-330d60780bea
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
binning parameters
coverage; graph; hic-mapping
binning software
DASTOOL (version 1.1.5); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7)
broad-scale environmental context
aquatic biome
collected by
EUICHI HIROSE
collecting institution
UNIVERSITY OF THE RYUKYUS
collection date
2021-03-15
completeness score
76.96
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
3.22
depth
0.5
environmental medium
adult tunicate tissue
geographic location (country and/or sea)
Japan
geographic location (latitude)
26.71
geographic location (longitude)
127.88
geographic location (region and locality)
Okinawa|Motobu|Back Reef at Bise
habitat
Rubbles of dead coral branches
host life stage
adult
host scientific name
Trididemnum clinides
host sex
hermaphrodite
host taxid
641091
identified by
EUICHI HIROSE
identifier_affiliation
UNIVERSITY OF THE RYUKYUS
investigation type
metagenome-assembled genome
isolation_source
Tunicate: Trididemnum clinides
local environmental context
marine coral reef biome
metagenomic source
sea squirt metagenome
number of standard tRNAs extracted
36
organism part
WHOLE ORGANISM
project name
ASG
relationship
obligate symbiosis at least for host
sample derived from
SAMEA114757178
sample name
b99afbb7-6f01-4ef3-93d9-330d60780bea
scientific_name
Rhizobiaceae bacterium
sequencing method
Pacbio Sequel II
specimen id
NSU0014301
specimen voucher
4
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
kaTriClin1.Rhizobiaceae_2