uncultured Hydrogenophaga sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA first public
2021-02-16
ENA last update
2021-07-02
ENA-FIRST-PUBLIC
2023-07-10T13:23:51Z
ENA-LAST-UPDATE
2023-11-20T15:55:34Z
External Id
SAMEA114008340
GAL
Sanger Institute
GAL_sample_id
SAN0001351
INSDC center alias
EarlhamInstitute
INSDC center name
Tree of Life Programme
INSDC first public
2023-07-10T13:23:51Z
INSDC last update
2023-11-20T15:55:34Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
dc363f7f-4c98-4a4b-be1e-ed56559e6cd8
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
Hifiasm (version 0.16.1-r375)
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
broker name
Collaborative Open Plant Omics broker account, Earlham Institute, Norwich
collected by
ALLEN
collecting institution
CCAP
collection date
2020-09-16
completeness score
91.3
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.0
environmental medium
adult algae tissue
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
56.4513
geographic location (longitude)
-5.4404
geographic location (region and locality)
Scotland | Scottish Marine Institute | SAMS | CCAP
habitat
Freshwater pond
host life stage
vegetative cell
host scientific name
Pseudopediastrum boryanum
host taxid
55410
identified by
ALLEN
identifier_affiliation
CCAP
investigation type
metagenome-assembled genome
isolation_source
Algae: Pseudopediastrum boryanum
lifestage
vegetative cell
local environmental context
small freshwater lake biome
metagenomic source
algae metagenome
number of standard tRNAs extracted
47
organism part
WHOLE ORGANISM
project name
DTOL
sample derived from
SAMEA114008336
sample name
dc363f7f-4c98-4a4b-be1e-ed56559e6cd8
scientific_name
uncultured Hydrogenophaga sp.
sequencing method
Pacbio Sequel II
specimen id
SAN0001351
specimen voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
ucPseBory1.Hydrogenophaga_sp_1