Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_00419936
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
missing: third party data
completeness score
63.6
completeness software
checkm2 0.1.3
contamination score
0.29
environmental medium
stool
geographic location (country and/or sea)
not provided
geographic location (latitude)
missing: third party data
geographic location (longitude)
missing: third party data
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
In this study, pregnant women (from 35 weeks gestation until their infants were 6 months old) and their infants (from birth until 2 years of age) were randomly assigned to receive a probiotic (either Bifidobacterium animalis subsp lactis HN019, Lactobaciilus rhamnosus HN001, or placebo). Stool shotgun metagenomes were sequenced shortly after birth, and at 3, 12, and 24 months of age. This dataset allows examination of how early life probiotic intervention, mode of delivery, and other metadata contribute to risk of eczema at 2 years.
sample derived from
SAMN09278667
sample name
spire_mag_00419936
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach