uncultured Amylibacter sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-07-10T13:39:45Z
ENA-LAST-UPDATE
2023-11-20T16:01:59Z
External Id
SAMEA114008393
GAL
Geomar Helmholtz Centre
GAL_sample_id
HP20.11.05 ASG 01
INSDC center name
Tree of Life Programme
INSDC first public
2023-07-10T13:39:45Z
INSDC last update
2023-11-20T16:01:59Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
1753fa5e-bfb5-4446-b014-495cdc3cb3b0
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
Hifiasm-Meta (version 0.3-r061); Hifiasm (version 0.13-r308)
binning parameters
coverage; graph; hic-mapping
binning software
DASTOOL (version 1.1.5); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected by
LUCIA PITA
collecting institution
GEOMAR
collection date
2020-12-15
completeness score
88.76
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.3
depth
2
environmental medium
adult sponges tissue
geographic location (country and/or sea)
Germany
geographic location (latitude)
54.42
geographic location (longitude)
10.18
geographic location (region and locality)
GEOMAR Kiel
habitat
rocky shore﻿
host life stage
adult
host scientific name
Halichondria panicea
host taxid
6063
identified by
LUCIA PITA
identifier_affiliation
GEOMAR
investigation type
metagenome-assembled genome
isolation_source
Sponge: Halichondria panicea
local environmental context
marine benthic biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
38
organism part
**OTHER SOMATIC ANIMAL TISSUE**
project name
ASG
sample derived from
SAMEA114008389
sample name
1753fa5e-bfb5-4446-b014-495cdc3cb3b0
scientific_name
uncultured Amylibacter sp.
sequencing method
Pacbio Sequel II
specimen id
GHC0000043
specimen voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
ANI
tolid
odHalPani1.Amylibacter_sp_2