Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_00288827
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2014-09-16
completeness score
97.64
completeness software
checkm2 0.1.3
contamination score
2.16
environmental medium
stool
geographic location (country and/or sea)
USA
geographic location (latitude)
37.44000000
geographic location (longitude)
-122.14000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Eight healthy human adults provided about 40 stool samples each (range 37-128 samples/subject) at daily or weekly intervals over about 22 weeks (range 20-55 weeks) surrounding a 1-day induced iso-osmotic diarrhea (colon cleanout) perturbation. The cleanout was identical to a common bowel preparation procedure prior to colonoscopy, involving the consumption of up to 4L of a polyethylene glycol-electrolyte solution until diarrhea was clear and watery. DNA was extracted from stool samples and investigated with V4 16S amplicon sequencing and with shotgun metagenomic sequencing (both sequencing modes using the Illumina HiSeq platform).
sample derived from
SAMN07336917
sample name
spire_mag_00288827
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach