Candidatus Thiodiazotropha endolucinida
original collection date
2021-07-06
assembly software
metaMDBG
habitat
Cymodocea nodosa meadow next to a sailing club and public beach (high anthropogenic impact), muddy highly sulphidic sediment
host scientific name
Loripinus fragilis
original collection location
SLOVENIA | PIRAN |BERNARDIN SQUARE
sample derived from
SAMEA115460582
geographic location (longitude)
13.58
number of standard tRNAs extracted
22
host sex
not collected
specimen_id
VIEM1010001
identified_by
BENEDICT YUEN
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
binning software
MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)
organism
Candidatus Thiodiazotropha endolucinida
host taxid
244460
scientific_name
Candidatus Thiodiazotropha endolucinida
geographic location (region and locality)
VIENNA | UNIVERSITY OF VIENNA
host life stage
adult
investigation type
metagenome-assembled genome
GAL
University of Vienna (Mollusc)
MAG coverage software
Minimap2 (version 2.24-r1122)
metagenomic source
mollusc metagenome
project name
ASG
sequencing method
Pacbio Sequel II
16s recovered
Yes
tolid
xbAnoFrag1.Thiodiazotropha_endolucinida_1
broad-scale environmental context
aquatic biome
collection date
2021-07-08
binning parameters
coverage; graph
contamination score
0.71
collected_by
BENEDICT YUEN
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
16S recovery software
PROKKA (version 1.14.5)
geographic location (country and/or sea)
Austria
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
ani_screen
completeness score
48.79
environmental medium
adult bivalve tissue
geographic location (latitude)
45.52
organism part
WHOLE ORGANISM
GAL_sample_id
NOT PROVIDED
identifier_affiliation
UNIVERSITY OF VIENNA
specimen_voucher
NOT COLLECTED
local environmental context
marine benthic biome
depth
2
barcoding center
UNIVERSITY OF VIENNA (MOLLUSC)
collecting institution
UNIVERSITY OF VIENNA
isolation_source
Bivalve: Anodontia fragilis