Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02271391
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2018-02-27
completeness score
99.57
completeness software
checkm2 0.1.3
contamination score
4.15
environmental medium
stool
geographic location (country and/or sea)
USA
geographic location (latitude)
39.29000000
geographic location (longitude)
-76.61000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
The goal of this study is to characterize the fecal microbiome of healthy donors and recurrent C. difficile infection patients before and after receiving fecal microbiota transplant therapy. A central aim is to identify organisms at the strain level for better understanding of engraftment and for design of synthetic microbiota therapies that may one day replace FMT.
sample derived from
SAMN18106087
sample name
spire_mag_02271391
scientific_name
Bacteroides uniformis
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach