Parabacteroides johnsonii
ENA-FIRST-PUBLIC
2023-07-13T16:22:50Z
ENA-LAST-UPDATE
2023-07-13T16:22:50Z
External Id
SAMEA114060870
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2023-07-13T16:22:50Z
INSDC last update
2023-07-13T16:22:50Z
INSDC status
public
Submitter Id
ERR9322424_bin.37_MetaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
MetaWRAP v1.3
broad-scale environmental context
Human digestive system
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
98.92
completeness software
CheckM
contamination score
0.22
environmental medium
faeces
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human feces metagenome
local environmental context
colon
metagenomic source
human feces metagenome
project name
INSPIRE is a study of duodenal mucosal resurfacing, through intestinal ablation, to investigate its potential for treatment of type 2 diabetes mellitus. In this study, the microbiome before and after intestinal ablation was studied in combination with a range of clinical markers.
sample derived from
SAMEA13060056
sample name
ERR9322424_bin.37_MetaWRAP_v1.3_MAG
scientific_name
Parabacteroides johnsonii
sequencing method
unspecified
taxonomic classification
The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides johnsonii
taxonomic identity marker
multi-marker approach