Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_01647762
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2017
completeness score
94.63
completeness software
checkm2 0.1.3
contamination score
1.31
environmental medium
stool
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
52.49000000
geographic location (longitude)
-1.89000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
The microbial community in Intensive Care Unit patients plays a key role in determining the balance between health and disease. Here, we describe a prospective observational study of 25 ICU patients in which serial faecal samples were subjected to shotgun metagenome sequencing, phylogenetic profiling and microbial genome analyses.
sample derived from
SAMN11258386
sample name
spire_mag_01647762
scientific_name
Bacteroides uniformis
sequencing method
NextSeq 550
taxonomic identity marker
multi-marker approach