Sedimenticolaceae bacterium
original collection date
2021-07-06
assembly software
metaMDBG
habitat
Cymodocea nodosa meadow next to a sailing club and public beach (high anthropogenic impact), muddy highly sulphidic sediment
host scientific name
Loripinus fragilis
original collection location
SLOVENIA | PIRAN |BERNARDIN SQUARE
sample derived from
SAMEA115460582
geographic location (longitude)
13.58
number of standard tRNAs extracted
53
host sex
not collected
specimen_id
VIEM1010001
identified_by
BENEDICT YUEN
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
binning software
MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)
organism
Sedimenticolaceae bacterium
host taxid
244460
scientific_name
Sedimenticolaceae bacterium
geographic location (region and locality)
VIENNA | UNIVERSITY OF VIENNA
host life stage
adult
investigation type
metagenome-assembled genome
GAL
University of Vienna (Mollusc)
MAG coverage software
Minimap2 (version 2.24-r1122)
metagenomic source
mollusc metagenome
project name
ASG
sequencing method
Pacbio Sequel II
16s recovered
Yes
tolid
xbAnoFrag1.Sedimenticolaceae_1
broad-scale environmental context
aquatic biome
collection date
2021-07-08
binning parameters
coverage; graph
contamination score
9.21
collected_by
BENEDICT YUEN
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
16S recovery software
PROKKA (version 1.14.5)
geographic location (country and/or sea)
Austria
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
taxonomic classification defined by topology and ANI
completeness score
99.77
environmental medium
adult bivalve tissue
geographic location (latitude)
45.52
organism part
WHOLE ORGANISM
GAL_sample_id
NOT PROVIDED
identifier_affiliation
UNIVERSITY OF VIENNA
specimen_voucher
NOT COLLECTED
local environmental context
marine benthic biome
depth
2
barcoding center
UNIVERSITY OF VIENNA (MOLLUSC)
collecting institution
UNIVERSITY OF VIENNA
isolation_source
Bivalve: Anodontia fragilis