Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02655011
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2012-06
completeness score
83.54
completeness software
checkm2 0.1.3
contamination score
3.79
environmental medium
swab
geographic location (country and/or sea)
USA
geographic location (latitude)
36.16000000
geographic location (longitude)
-86.78000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
In this study, we collected matched stool, rectal swab and mucosal tissue samples from 240 study participants at two time points, which resulted in 1,397 shotgun metagenomes. We estimated the biospecimen type variation of both metagenome taxonomy and functional pathways. We also assessed whether the associations between taxa/pathways and age, sex, body mass index (BMI), non-steroidal anti-inflammatory drugs (NSAIDs) use and antibiotics use were consistent across the different sample types.
sample derived from
SAMN17578059
sample name
spire_mag_02655011
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach