Thalassospiraceae bacterium
assembly software
metaMDBG
habitat
coral reef
broad-scale environmental context
aquatic biome
host scientific name
Millepora complanata
collection date
2021-05-10
sample derived from
SAMEA115458483
geographic location (longitude)
-67.05
binning parameters
coverage; graph; hic-mapping
contamination score
7.47
collected_by
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ| MARIA DEL PILAR| DANIEL TOLEDO
tRNA extraction software
PROKKA (version 1.14.5)
number of standard tRNAs extracted
43
host sex
not collected
specimen_id
NSU0055102
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
16S recovery software
PROKKA (version 1.14.5)
identified_by
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
geographic location (country and/or sea)
Puerto Rico
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
organism
Thalassospiraceae bacterium
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
taxonomic novelty determined using RED
host taxid
544496
completeness score
53.95
environmental medium
adult hydrozoan tissue
geographic location (latitude)
17.96
scientific_name
Thalassospiraceae bacterium
organism part
WHOLE ORGANISM
geographic location (region and locality)
Cayo Enrique
GAL_sample_id
NOT PROVIDED
host life stage
adult
identifier_affiliation
UNIVERSITY OF PUERTO RICO MAYAGUEZ
investigation type
metagenome-assembled genome
specimen_voucher
Sanger Institute Genome PR22
local environmental context
marine coral reef biome
GAL
Nova Southeastern University
MAG coverage software
Minimap2 (version 2.24-r1122)
depth
1.0
metagenomic source
hydrozoan metagenome
project name
ASG
sequencing method
Pacbio Sequel II
16s recovered
Yes
collecting institution
UNIVERSITY OF PUERTO RICO MAYAGUEZ
tolid
jhMilComp2.Thalassospiraceae_1
isolation_source
Hydrozoan: Millepora complanata