uncultured Gammaproteobacteria bacterium
16S recovered
No
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-07-10T15:25:47Z
ENA-LAST-UPDATE
2023-11-20T16:02:04Z
External Id
SAMEA114009097
GAL
Geomar Helmholtz Centre
GAL_sample_id
WB-00800
INSDC center name
Tree of Life Programme
INSDC first public
2023-07-10T15:25:47Z
INSDC last update
2023-11-20T16:02:04Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
fd1f8ac9-b383-4c2b-b7b3-11ed3a192f86
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
Hifiasm (version 0.16.1-r375)
binning parameters
coverage; graph; hic-mapping
binning software
DASTOOL (version 1.1.5); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected by
KATHRIN BUSCH
collecting institution
GEOMAR
collection date
2017-06-24
completeness score
31.67
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.0
depth
1018
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Spain
geographic location (latitude)
43.78
geographic location (longitude)
-6.2
geographic location (region and locality)
Cantabrian_Sea_Avilés_Canyon
habitat
canyon
host life stage
adult
host scientific name
Aphrocallistes beatrix
host taxid
398365
identified by
PILAR RÌOS
identifier_affiliation
IEO, Spain
investigation type
metagenome-assembled genome
isolation_source
Sponge: Aphrocallistes beatrix
local environmental context
marine benthic biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
16
organism part
**OTHER SOMATIC ANIMAL TISSUE**
project name
ASG
sample derived from
SAMEA114009089
sample name
fd1f8ac9-b383-4c2b-b7b3-11ed3a192f86
scientific_name
uncultured Gammaproteobacteria bacterium
sequencing method
Pacbio Sequel II
specimen id
GHC0000028
specimen voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
ohAphBeat7.Gammaproteobacteria_3