Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02639599
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2015-04-16
completeness score
99.41
completeness software
checkm2 0.1.3
contamination score
1.17
environmental medium
stool
geographic location (country and/or sea)
Canada
geographic location (latitude)
51.04470000
geographic location (longitude)
-114.07190000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Stool sample metagenomes from two healthy FMT donors and ten FMT recipients (five recipients per donor). All recipients had chronic, recurrent Clostridium difficile infection (CDI) and received vancomycin for a minimum of ten days prior to FMT. Recipients did not take any antibiotics on the day of transplant, or for the remaining duration of the sampling period.
sample derived from
SAMN17918365
sample name
spire_mag_02639599
scientific_name
Bacteroides uniformis
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach