Candidatus Thiodiazotropha sp.
original collection date
2021-11-08
assembly software
metaMDBG
habitat
intertidal, rocky rubble, mud, macroalgae
host scientific name
Ctena cf. galapagana NHMUK 20210086
original collection location
COSTA RICA | GUANACASTE | BAHIA SANTA ELENA
sample derived from
SAMEA115460587
geographic location (longitude)
16.40
number of standard tRNAs extracted
46
host sex
not collected
specimen_id
VIEM1100001
identified_by
John Taylor
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
organism
Candidatus Thiodiazotropha sp.
host taxid
2892552
scientific_name
Candidatus Thiodiazotropha sp.
geographic location (region and locality)
VIENNA | UNIVERSITY OF VIENNA
host life stage
adult
investigation type
metagenome-assembled genome
GAL
University of Vienna (Mollusc)
MAG coverage software
Minimap2 (version 2.24-r1122)
metagenomic source
mollusc metagenome
project name
ASG
sequencing method
Pacbio Sequel II
16s recovered
Yes
tolid
xbCteSpea1.Thiodiazotropha_sp_1
broad-scale environmental context
aquatic biome
collection date
2021-11-15
binning parameters
coverage; graph
contamination score
4.26
collected_by
LAETITIA WILKINS |. BENEDICT YUEN
tRNA extraction software
PROKKA (version 1.14.5)
original geographic location (longitude)
-85.798925
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
16S recovery software
PROKKA (version 1.14.5)
geographic location (country and/or sea)
Austria
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
taxonomic identity marker
taxonomic classification defined by topology and ANI
completeness score
98.74
environmental medium
adult bivalve tissue
geographic location (latitude)
48.19
organism part
WHOLE ORGANISM
sample collection method
Shovel
GAL_sample_id
NOT PROVIDED
identifier_affiliation
NATURAL HISTORY MUSEUM | LONDON | UK
original geographic location (latitude)
10.912658
specimen_voucher
NOT_COLLECTED
local environmental context
marine benthic biome
barcoding center
NOT PROVIDED
collecting institution
MPI FOR MARINE MICROBIOLOGY | UNIVERSITY OF VIENNA
isolation_source
Bivalve: Ctena cf. galapagana NHMUK 20210086