Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_01734730
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2011-03-07
completeness score
87.39
completeness software
checkm2 0.1.3
contamination score
2.05
environmental medium
stool
geographic location (country and/or sea)
Italy
geographic location (latitude)
41.85846000
geographic location (longitude)
12.62990000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
As worldwide metabolic disease pandemics rise relentlessly with their concomitant clinical complications such as non-alcoholic fatty liver disease (NAFLD), FLORINASH sought to use an innovative research concept to address the role of the intestinal microbiota in the pathogenesis of NAFLD. Metagenomic data deposited herein are from patients who underwent bariatric surgery, and for whom liver biopsies were available to allow diagnosis of NAFLD.
sample derived from
SAMEA4019792
sample name
spire_mag_01734730
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach