Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_01223214
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
missing: third party data
completeness score
99.97
completeness software
checkm2 0.1.3
contamination score
0.05
environmental medium
stool
geographic location (country and/or sea)
not provided
geographic location (latitude)
missing: third party data
geographic location (longitude)
missing: third party data
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Microbes that live in the gastrointestinal tracts of humans and other animals play key roles in the metabolism of nutrients, harvest of energy for the host, and the uptake of vitamins. Therefore, these microbes may be important contributors to diseases in which nutrients are poorly absorbed, the gastrointestinal tract is diseased, and/or the host grows poorly. The aim of this project is to determine the role of gastrointestinal microbes in the relentless and difficult-to-treat growth failure in children with the genetic disease cystic fibrosis, with the hope of both identifying interventions that will lead to better nutritional outcomes in these and in other children with poor early growth.
sample derived from
SAMN10722253
sample name
spire_mag_01223214
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach