Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_01742435
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
missing: third party data
completeness score
84.07
completeness software
checkm2 0.1.3
contamination score
1.04
environmental medium
stool
geographic location (country and/or sea)
not provided
geographic location (latitude)
missing: third party data
geographic location (longitude)
missing: third party data
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
This study addresses the role of the intestinal microbiome in susceptibilty to Salmonella Typhi and Salmonella Paratyphi A in a human challenge model. Briefly, volunteers are challenged with 10(4) S. Typhi or 10(3) S. Paratyphi Ai and monitored over a two-week period for clinical signs of typhoid fever. Approximately sixty percent of challenged volunteers develop typhoid fever. All volunteers receive antibiotic treatment. The study takes fecal samples from challenged individuals and studies microbiome composition day 0, 7, 14, 28 and 90 post challenge. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/
sample derived from
SAMEA104500614
sample name
spire_mag_01742435
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach