Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_00718911
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2015-04-20
completeness score
92.28
completeness software
checkm2 0.1.3
contamination score
0.05
environmental medium
stool
geographic location (country and/or sea)
Luxembourg
geographic location (latitude)
49.00000000
geographic location (longitude)
6.00000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Differences in microbial colonization of the gut triggered by earliest exposure have been linked to adverse health effects later in life. At present, the transfer of microbiota from mother to infant, its role in early colonization and subsequent effects on the host remain unresolved because of the lack of data reflecting earliest microbial exposure. Here, we recruited 12 mother-neonate pairs, 4 neonates each born vaginally, by caesarean section and born by caesarean section and small for gestational age. We collected stool and a vaginal swab from mothers one hour prior to delivery, as well as stool from their respective neonates during the first 24 hours, and after 3 and 5 days in order to obtain whole metagenome random shotgun sequence data for a total of 51 samples. We additionally collected stool samples from neonates at days 28, 150 and 1 year after birth for 16S and 18S rRNA gene amplicon sequencing analyses.
sample derived from
SAMN06909456
sample name
spire_mag_00718911
scientific_name
Bacteroides uniformis
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach