Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02170570
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
not provided
completeness score
93.16
completeness software
checkm2 0.1.3
contamination score
1.34
environmental medium
stool
geographic location (country and/or sea)
USA
geographic location (latitude)
40.76550000
geographic location (longitude)
-73.95500000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Fecal samples were collected from 20 patients diagnosed with active ulcerative colitis (UC, Mayo score >= 3 and an endoscopic subscore >= 1) before fecal microbiota transplantation (FMT) and at week 4 post-FMT. Samples from the 2-donor fecal preparation used to treat the 20 UC patients were also collected and subjected to metagenomic shotgun sequencing.
sample derived from
SAMN22039247
sample name
spire_mag_02170570
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach