Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02770955
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2018-02-01
completeness score
59.83
completeness software
checkm2 0.1.3
contamination score
0.49
environmental medium
stool
geographic location (country and/or sea)
Australia
geographic location (latitude)
-33.52000000
geographic location (longitude)
151.12000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
The project examines the direct effect of the microbiome on the peripheral immune response in patients with NAFLD-HCC. The project employs shotgun metagenomics and metabolomics to present novel insights to the structure, function and metabolomic capability of the gut microbiome in patients with NAFLD-cirrhosis, with and without HCC compared to healthy controls. Next, we examine in an ex-vivo cell culture model the effect of NAFLD-HCC-associated microbiome and metabolome on the peripheral immune response.
sample derived from
SAMN16709257
sample name
spire_mag_02770955
scientific_name
Bacteroides uniformis
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach