Parvibaculaceae bacterium
assembly software
metaMDBG
habitat
rocky bottom
broad-scale environmental context
aquatic biome
host scientific name
Axinella damicornis
collection date
2021-02-01
sample derived from
SAMEA115458491
geographic location (longitude)
2.80
binning parameters
coverage; graph; hic-mapping
contamination score
0.0
collected_by
Manuel Maldonado
tRNA extraction software
PROKKA (version 1.14.5)
number of standard tRNAs extracted
44
host sex
not applicable
specimen_id
GHC0000182
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
16S recovery software
PROKKA (version 1.14.5)
identified_by
Manuel Maldonado
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
relationship
unknown
geographic location (country and/or sea)
Spain
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
organism
Parvibaculaceae bacterium
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
taxonomic identity marker
taxonomic novelty determined using RED
host taxid
72671
completeness score
95.6
environmental medium
adult sponge tissue
geographic location (latitude)
41.67
scientific_name
Parvibaculaceae bacterium
organism part
WHOLE ORGANISM
geographic location (region and locality)
Girona|Blanes
GAL_sample_id
NOT PROVIDED
host life stage
adult
identifier_affiliation
CEAB-CSIC
investigation type
metagenome-assembled genome
specimen_voucher
NOT PROVIDED
local environmental context
marine benthic biome
GAL
Geomar Helmholtz Centre
MAG coverage software
Minimap2 (version 2.24-r1122)
depth
14
metagenomic source
sponge metagenome
project name
ASG
sequencing method
Pacbio Sequel II
16s recovered
Yes
collecting institution
CEAB-CSIC
tolid
odAxiDami1.Parvibaculaceae_1
isolation_source
Sponge: Axinella damicornis