Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_02518188
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2020
completeness score
61.38
completeness software
checkm2 0.1.3
contamination score
0.15
environmental medium
stool
geographic location (country and/or sea)
Brazil
geographic location (latitude)
-22.22111000
geographic location (longitude)
-54.80556000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Brazil is the fifth-largest country by area (3.2 million square miles) and represents 47% of the South American continent. It is also the sixth most populous country (210 million inhabitants), the first world's largest exporter of beef (2,314 million tonnes), poultry (3,811 million tonnes), and fourth-largest exporter of pork meat (861,000 tonnes), according to 2019 report(23), with Asian countries being the main importers (24). As part of a one-health based surveillance study, we characterized the fecal metagenomes of food-producing animals (swine, cattle, and poultry) and humans collected around the same timeframe from all five Brazilian geographic regions as well as the resistome encountered. To the best of our knowledge, this is the first study of this kind performed in South America.
sample derived from
SAMN17225206
sample name
spire_mag_02518188
scientific_name
Bacteroides uniformis
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach