Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_00553829
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2013
completeness score
66.63
completeness software
checkm2 0.1.3
contamination score
3.59
environmental medium
stool
geographic location (country and/or sea)
USA
geographic location (latitude)
missing: third party data
geographic location (longitude)
missing: third party data
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
This project collected and profiled paired shotgun metagenomes and LC-MS metabolomes from subjects with inflammatory bowel disease (IBD) and non-IBD controls. We identified and validated differentially abundant (DA) features in the metagenomes and metabolomes of IBD subjects, and described putatively mechanistic associations between DA microbes, enzymes, and metabolites.
sample derived from
SAMN08049742
sample name
spire_mag_00553829
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach