Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_00683748
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2014-06-16
completeness score
79.36
completeness software
checkm2 0.1.3
contamination score
9.07
environmental medium
stool
geographic location (country and/or sea)
USA
geographic location (latitude)
39.28846263
geographic location (longitude)
-76.62594594
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
This project takes advantage of challenge studies with an important human pathogen, enterotoxigenic Escherichia coli, the etiological agent of severe diarrhea in the developed countries and traveler's diarrhea in individuals from developed countries. The goal of this study is to understand the dynamic interactions between the host, pathogen and microbiota and how these interactions play a role in determining the pathogen population in the host, the development of an immune response, and the diversity and ecology of the microbiota. The project uses a combination of genomic, transcriptomic and metagenomic technologies together with human challenge studies to generate new insights into the interaction of host, pathogen, and microbiota.
sample derived from
SAMN05545081
sample name
spire_mag_00683748
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach