Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_00186872
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2013
completeness score
91.74
completeness software
checkm2 0.1.3
contamination score
3.4
environmental medium
stool
geographic location (country and/or sea)
USA
geographic location (latitude)
42.36320000
geographic location (longitude)
-71.06880000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Longitudinal Stool Study of patients with IBD and controls. This project combines data from PRISM and STINKI cohorts to characterize the gut microbiome of individuals with IBD and controls over time.
sample derived from
SAMN07199912
sample name
spire_mag_00186872
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach