Rhodococcus qingshengii
assembly software
metaMDBG
habitat
rocky bottom
broad-scale environmental context
aquatic biome
host scientific name
Axinella damicornis
collection date
2021-02-01
sample derived from
SAMEA115458491
geographic location (longitude)
2.80
binning parameters
coverage; graph; hic-mapping
contamination score
0.0
collected_by
Manuel Maldonado
tRNA extraction software
PROKKA (version 1.14.5)
number of standard tRNAs extracted
54
host sex
not applicable
specimen_id
GHC0000182
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
16S recovery software
PROKKA (version 1.14.5)
identified_by
Manuel Maldonado
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
relationship
unknown
geographic location (country and/or sea)
Spain
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
organism
Rhodococcus qingshengii
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
ani_screen
host taxid
72671
completeness score
87.04
environmental medium
adult sponge tissue
geographic location (latitude)
41.67
scientific_name
Rhodococcus qingshengii
organism part
WHOLE ORGANISM
geographic location (region and locality)
Girona|Blanes
GAL_sample_id
NOT PROVIDED
host life stage
adult
identifier_affiliation
CEAB-CSIC
investigation type
metagenome-assembled genome
specimen_voucher
NOT PROVIDED
local environmental context
marine benthic biome
GAL
Geomar Helmholtz Centre
MAG coverage software
Minimap2 (version 2.24-r1122)
depth
14
metagenomic source
sponge metagenome
project name
ASG
sequencing method
Pacbio Sequel II
16s recovered
Yes
collecting institution
CEAB-CSIC
tolid
odAxiDami1.Rhodococcus_qingshengii_1
isolation_source
Sponge: Axinella damicornis