Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_00701850
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2014/2015
completeness score
86.14
completeness software
checkm2 0.1.3
contamination score
0.45
environmental medium
stool
geographic location (country and/or sea)
Germany
geographic location (latitude)
48.53690000
geographic location (longitude)
9.05360000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Two patient cohorts received either cotrimoxazole (ID 1 - Id 29) or ciprofloxacin (ID 504 - ID 538). Stool samples were collected at baseline before treatment (t0), one day (t1) and three days (t2) after treatment start and at the end of treatment (mx. day 7, t3). Samples were subjected to shotgun metagenomics on a HiSeq machine, using a paired-end approach with 2 x 150 bp and a 550 bp insert size.
sample derived from
SAMEA4814217
sample name
spire_mag_00701850
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach