Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_01096453
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2012
completeness score
83.81
completeness software
checkm2 0.1.3
contamination score
3.99
environmental medium
stool
geographic location (country and/or sea)
India
geographic location (latitude)
11.12710000
geographic location (longitude)
78.65690000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Normal growth and development in infancy and childhood are intimately linked to an intact intestine and absorptive system. A high prevalence of growth retardation in low-income countries has been linked to a dysfunction of the intestine termed environmental enteropathy (EE). We hypothesized that children living in a contaminated environment would tolerate RS food supplements, that they would ferment the RS to SCFA, and that the supplemental feeds would have an impact on the fecal microbiome. In this study, we thus compared a naturally occurring RS with a modified (acetylated) RS in a crossover manner, and also evaluated the differences between normally growing and stunted children.
sample derived from
SAMN09690915
sample name
spire_mag_01096453
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 1000
taxonomic identity marker
multi-marker approach