Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_01862085
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
missing: third party data
completeness score
56.4
completeness software
checkm2 0.1.3
contamination score
2.03
environmental medium
stool
geographic location (country and/or sea)
USA
geographic location (latitude)
44.0234
geographic location (longitude)
-92.46295
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
We sequenced the gut metagenomes of patients with colorectal cancer, together age- and sex-matched controls. Our goal is to analyze their taxonomic and functional profiles, as well as reconstruct bacterial and archaeal genomes of interest, related to the microbial metabolic toxicity that may be driving colorectal cancer progression.
sample derived from
SAMN07452488
sample name
spire_mag_01862085
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach