Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_00302897
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2013-05-23
completeness score
78.19
completeness software
checkm2 0.1.3
contamination score
2.0
environmental medium
stool
geographic location (country and/or sea)
Sweden
geographic location (latitude)
63.81857700
geographic location (longitude)
20.29661100
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
We used untargeted metagenomic Illumina sequencing to study fecal samples of 35 Swedish healthcare students, taken before and after embarking on a student exchange program to the Indian peninsula or central Africa. The students were not taking antibiotics between sampling points. Antibiotic resistance gene frequencies were investigated in all samples.
sample derived from
SAMEA2784487
sample name
spire_mag_00302897
scientific_name
Bacteroides uniformis
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach