Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_00890735
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2016-07-20
completeness score
86.82
completeness software
checkm2 0.1.3
contamination score
0.14
environmental medium
stool
geographic location (country and/or sea)
India
geographic location (latitude)
12.51000000
geographic location (longitude)
74.98000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Through Next Generation Sequencing we delineated the composition and functional detail of gut microbiota in various world populations. The relationship of the gut microbiota to health and disease is one of the primary goals of human microbiome studies. The microbiota of the Indian population is of particular interest to researchers because India encompasses a unique diversity in environmental conditions, diet and ethnic geographical population. In this study, we conduct 16s rRNA sequencing, shotgun metagenomic and metabolomics analysis of 110 healthy Indian subjects, which reveals novel gut microbial community structures
sample derived from
SAMN07449060
sample name
spire_mag_00890735
scientific_name
Bacteroides uniformis
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach