Bacteroides uniformis
ENA first public
2024-09-21
INSDC center name
EMBL Heidelberg
INSDC status
public
Submitter Id
spire_mag_00875275
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
default
binning software
metabat 2.12.1
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2014-03-16
completeness score
93.18
completeness software
checkm2 0.1.3
contamination score
0.1
environmental medium
stool
geographic location (country and/or sea)
USA
geographic location (latitude)
39.00000000
geographic location (longitude)
-77.10000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Metagenomic shotgun and V4 16S rRNA amplicon sequencing of human gut communities during the baseline diet (BD) and ketogenic diet (KD) in crossover study.</p><p>V4 16S rRNA amplicon sequencing of mouse gut communities studying the impact of the ketogenic diet and ketogenesis on the gut microbiome and immune responses.
sample derived from
SAMN11268238
sample name
spire_mag_00875275
scientific_name
Bacteroides uniformis
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach