13b2e092-462b-4f69-be90-4ec282aad33a-asg-MAGScoT_cleanbin_000002
uncultured Alphaproteobacteria bacterium
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-05-31T11:44:04Z
ENA-LAST-UPDATE
2023-11-20T15:51:15Z
External Id
SAMEA113565798
GAL
Geomar Helmholtz Centre
GAL_sample_id
UVA00021
INSDC center name
Tree of Life Programme
INSDC first public
2023-05-31T11:44:04Z
INSDC last update
2023-11-20T15:51:15Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
13b2e092-462b-4f69-be90-4ec282aad33a
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
Hifiasm (version 0.16.1-r375); Hifiasm-Meta (version 0.3-r061)
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
broad-scale environmental context
aquatic biome
collected by
JASPER MERIJN DE GOEIJ | BENJAMIN MUELLER
collecting institution
University of Amsterdam, Institute for Biodiversity and Ecosystem Dyamics, Department of Freshwater and Marine Ecology
collection date
2021-01-19
completeness score
87.67
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.0
depth
35
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Curacao
geographic location (latitude)
12.1244
geographic location (longitude)
-68.973
geographic location (region and locality)
Piscadera Bay | Station Buoy #1
habitat
coral fringing reef, slope, cryptic habitat, on coral reef rock (calcium carbonate)
host life stage
adult
host scientific name
Halisarca caerulea
host taxid
858189
identified by
JASPER MERIJN DE GOEIJ | BENJAMIN MUELLER
identifier_affiliation
University of Amsterdam, Institute for Biodiversity and Ecosystem Dyamics, Department of Freshwater and Marine Ecology
investigation type
metagenome-assembled genome
isolation_source
Sponge: Halisarca caerulea
local environmental context
marine coral reef biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
45
organism part
WHOLE ORGANISM
project name
ASG
relationship
benificial
sample derived from
SAMEA113565797
sample name
13b2e092-462b-4f69-be90-4ec282aad33a
sample same as
SAMEA8576918
scientific_name
uncultured Alphaproteobacteria bacterium
sequencing method
Pacbio Sequel II
specimen id
GHC0000080
specimen voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
odHalCaeu1.Alphaproteobacteria_2