6dabea1c-7741-48bc-a34a-7d6fb9ada6bf-asg-MAGScoT_cleanbin_000006
Rhodococcus qingshengii
original collection date
2021-11-08
assembly software
metaMDBG
habitat
intertidal, rocky rubble, mud, macroalgae
host scientific name
Ctena cf. galapagana NHMUK 20210086
original collection location
COSTA RICA | GUANACASTE | BAHIA SANTA ELENA
sample derived from
SAMEA115460587
geographic location (longitude)
16.40
number of standard tRNAs extracted
48
host sex
not collected
specimen_id
VIEM1100001
identified_by
John Taylor
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
organism
Rhodococcus qingshengii
host taxid
2892552
scientific_name
Rhodococcus qingshengii
geographic location (region and locality)
VIENNA | UNIVERSITY OF VIENNA
host life stage
adult
investigation type
metagenome-assembled genome
GAL
University of Vienna (Mollusc)
MAG coverage software
Minimap2 (version 2.24-r1122)
metagenomic source
mollusc metagenome
project name
ASG
sequencing method
Pacbio Sequel II
16s recovered
Yes
tolid
xbCteSpea1.Rhodococcus_qingshengii_1
broad-scale environmental context
aquatic biome
collection date
2021-11-15
binning parameters
coverage; graph
contamination score
0.03
collected_by
LAETITIA WILKINS |. BENEDICT YUEN
tRNA extraction software
PROKKA (version 1.14.5)
original geographic location (longitude)
-85.798925
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
16S recovery software
PROKKA (version 1.14.5)
geographic location (country and/or sea)
Austria
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
ani_screen
completeness score
85.96
environmental medium
adult bivalve tissue
geographic location (latitude)
48.19
organism part
WHOLE ORGANISM
sample collection method
Shovel
GAL_sample_id
NOT PROVIDED
identifier_affiliation
NATURAL HISTORY MUSEUM | LONDON | UK
original geographic location (latitude)
10.912658
specimen_voucher
NOT_COLLECTED
local environmental context
marine benthic biome
barcoding center
NOT PROVIDED
collecting institution
MPI FOR MARINE MICROBIOLOGY | UNIVERSITY OF VIENNA
isolation_source
Bivalve: Ctena cf. galapagana NHMUK 20210086