Metagenome-Assembled Genome: ERR9578244_bin.5_MetaWRAP_v1.3_MAG
Anaerobutyricum hallii
This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR9578244 of study ERP132305.
ENA-FIRST-PUBLIC
2023-07-13T16:22:56Z
ENA-LAST-UPDATE
2023-07-13T16:22:56Z
External Id
SAMEA114063190
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2023-07-13T16:22:56Z
INSDC last update
2023-07-13T16:22:56Z
INSDC status
public
Submitter Id
ERR9578244_bin.5_MetaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
MetaWRAP v1.3
broad-scale environmental context
Human digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2018
completeness score
50.35
completeness software
CheckM
contamination score
0.69
environmental medium
faeces
geographic location (country and/or sea)
Germany
geographic location (latitude)
48.5216364
geographic location (longitude)
9.0576448
investigation type
metagenome-assembled genome
isolation_source
human feces metagenome
local environmental context
colon
metagenomic source
human feces metagenome
project name
Changes in intestinal microbiome composition have been described in animal models of Alzheimer`s disease (AD) and AD patients. Here we investigated how well taxonomic and functional intestinal microbiome data can be used to discriminate between amyloid-positive AD patients and cognitively healthy elderly controls.
sample derived from
SAMEA13959597
sample name
ERR9578244_bin.5_MetaWRAP_v1.3_MAG
scientific_name
Anaerobutyricum hallii
sequencing method
Illumina HiSeq 2000
taxonomic classification
The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Anaerobutyricum;s__Anaerobutyricum hallii
taxonomic identity marker
multi-marker approach