2c30fffb-dc90-463c-b58b-052e140da0d8-asg-MAGScoT_cleanbin_000111
Oligoflexales bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-02-05
GAL
The Sainsbury Laboratory
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
2c30fffb-dc90-463c-b58b-052e140da0d8
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Sergio Perez-Ortega
collecting institution
Real Jardín Botánico, CSIC
collection date
2022-06-16
completeness score
78.43
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
5.88
elevation
1
environmental medium
adult lichen tissue
geographic location (country and/or sea)
Italy
geographic location (latitude)
44.06
geographic location (longitude)
-9.92
geographic location (region and locality)
Liguria | Lerici
habitat
Rock outcrops on Fiescherino beach
host life stage
vegetative structure
host scientific name
Lichina confinis
host sex
not applicable
host taxid
174425
identified_by
Sergio Perez-Ortega
identifier_affiliation
Real Jardín Botánico, CSIC
investigation type
metagenome-assembled genome
isolation_source
Lichen: Lichina confinis
local environmental context
marine biome
metagenomic source
lichen metagenome
number of standard tRNAs extracted
35
organism part
WHOLE ORGANISM
project name
ASG
relationship
Lichen
sample collection method
COLLECTED BY HAND
sample derived from
SAMEA117660875
sample name
2c30fffb-dc90-463c-b58b-052e140da0d8
scientific_name
Oligoflexales bacterium
sequencing method
Pacbio Sequel II
specimen_id
SL0000023
specimen_voucher
nan
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
glLicConf4.Oligoflexales_1