Metagenome-Assembled Genome: ERR9492512_bin.9_MetaWRAP_v1.3_MAG
uncultured Eubacteriales bacterium
This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR9492512 of study ERP136768.
ENA-FIRST-PUBLIC
2023-07-13T20:34:57Z
ENA-LAST-UPDATE
2023-07-13T20:34:57Z
External Id
SAMEA114063944
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2023-07-13T20:34:57Z
INSDC last update
2023-07-13T20:34:57Z
INSDC status
public
Submitter Id
ERR9492512_bin.9_MetaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
MetaWRAP v1.3
broad-scale environmental context
Human digestive system
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
90.25
completeness software
CheckM
contamination score
0.27
environmental medium
faeces
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human feces metagenome
local environmental context
colon
metagenomic source
human feces metagenome
project name
Alterations in gut microbiota might contribute to uremic toxicity and immune dysregulation in patients with end-stage renal disease. Hemodialysis patients are prone to infection and higher mortality following sepsis. The virulence factors in the gut metagenome have not been well studied in hemodialysis patients, which could be employed by microorganisms to successfully thrive and flourish in their hosts. In this study, we performed shotgun metagenomics sequencing on fecal DNA collected from 16 control subjects and 24 hemodialysis patients.
sample derived from
SAMEA13854799
sample name
ERR9492512_bin.9_MetaWRAP_v1.3_MAG
scientific_name
uncultured Eubacteriales bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic classification
The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__;s__
taxonomic identity marker
multi-marker approach