14877.PDAUD183.R.META; PDA_MAPS_human
human gut metagenome
PDA_resected_CP
ENA-FIRST-PUBLIC
2023-02-02
ENA-LAST-UPDATE
2023-02-02
External Id
SAMEA112450564
INSDC center alias
UCSDMI
INSDC center name
University of California San Diego Microbiome Initiative
INSDC first public
2023-02-02T16:22:48Z
INSDC last update
2023-02-02T16:22:48Z
INSDC status
public
Submitter Id
qiita_sid_14877:14877.PDAUD183.R.META
antibiotic_treatment_before_enrollment
More than 6 months no antibiotics
antidepressant
no
antidiabetics
yes
autism_in_past
no
bowel_intestinal_surgery_in_past
no
cancer_in_past
no
cardiovascular_disease_in_past
yes
cholestasis_at_time_of_enrollment
not collected
chronic_alcohol_consumption
Never chronic alcohol consumption
chronic_constipation_in_past
no
chronic_diarrhea_in_past
no
clinically_relevant_fistula
not relevant
clostridiodides_diff__infection_in_past
no
collection_device
eSwab
collection_method
rectal
collection_timestamp
2022
dementia_in_past
no
depression_in_past
no
diabetes_mellitus_in_past
yes
diagnosis
diag_pda
diet
omnivour
dna_extracted
TRUE
elevation
150
elevation_units
meters
empo_1
Host-associated
empo_2
Animal
empo_3
Animal distal gut
env_biome
urban biome
env_feature
human-associated
env_material
intestine environment
env_package
human-gut
ethnicity
Caucasian
extra_gastrointestinal_cancer_in_past
no
fistula
no
fistula_treatment
not collected
gastrointestinal_cancer_in_past
no
gastrointestinal_diesease_in_past
no
geo_loc_name
Germany:Stadt Gottingen
heart_failure_in_past
no
hematologic_cancer_in_past
no
hepatitis_in_past
no
hiv_in_past
no
host scientific name
Homo sapiens
host_age
64
host_age_units
years
host_body_habitat
UBERON:gastrointestinal system
host_body_mass_index
24.7
host_body_product
UBERON:feces
host_body_site
UBERON:rectum
host_common_name
human
host_height
167
host_height_units
cm
host_subject_id
200
host_taxid
9606
host_weight
69
host_weight_units
kg
immunosuppressant
no
inflammatory_bowel_disease
no
insuline
no
irb_institute
University medical center Goettingen
irb_protocol_id
2807
irritable_stomach_bowel_disease_in_past
no
latitude
51.53
latitude_units
Decimal degrees
laxatives
yes
life_stage
adult
liver_cirrhosis_in_past
no
liver_diasease_in_past
no
location_of_surgery
Pancreatic head resection
longitude
9.93
longitude_units
Decimal degrees
metformin
no
nafld_in_past
no
neuroleptics
no
neurological_psychiatric_disease_in_past
no
nicotine_consumption
11-20 cigarettes/day
nsar
yes
number_of_days_between_enrollment_and_pancreatic_surgery
1
opiates
yes
other_abdominal_surgery
yes
other_antidiabetics
yes
other_gastrointestinal_diseases_in_past
no
other_liver_disease_in_past
no
other_neurological_disease
no
painkiller
yes
paracetamol
no
parkinson_in_past
no
physical_specimen_location
UMG
physical_specimen_remaining
FALSE
ppi
no
pseudonym
PDAUD183
rheumatic_disease_in_past
no
sample name
qiita_sid_14877:14877.PDAUD183.R.META
sample_type
rectal swab
scientific_name
human gut metagenome
sex
male
specific_antibiotics
not collected
statines
yes
surgery_in_past
yes
time_of_pancreatic_surgery
< 1 week after enrollment
time_point
not provided
true_control
TRUE
tube_id
PDA_resected_CP_PDAUD183_R_META
type_of_fistula
no fistula
type_of_pancreatic_surgery
Traverso