92f3ae9a-dbe2-4ca7-bc5a-1d761e4e6269-asg-bin.16
uncultured Spirochaeta sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-12-21T10:54:54Z
ENA-LAST-UPDATE
2023-12-21T10:54:54Z
External Id
SAMEA115053736
GAL
Queen Mary University of London
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC first public
2023-12-21T10:54:54Z
INSDC last update
2023-12-21T10:54:54Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
92f3ae9a-dbe2-4ca7-bc5a-1d761e4e6269
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
barcoding center
QUEEN MARY UNIVERSITY OF LONDON
binning parameters
coverage; graph
binning software
MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
Kate Mortimer
collecting institution
Department of Natural Sciences, Amgueddfa Cymru - National Museum Wales, Cardiff, United Kingdom
collection date
2022-06-14
completeness score
99.2
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
7.2
depth
0.5m
environmental medium
adult annelid tissue
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
50.33
geographic location (longitude)
4.20
geographic location (region and locality)
Plymouth|Cawsands Bay
habitat
low water (0.5m) in muddy sand sediments
host life stage
adult
host scientific name
Maea johnstoni
host sex
not provided
host taxid
1436028
identified_by
Kate Mortimer
identifier_affiliation
Department of Natural Sciences, Amgueddfa Cymru - National Museum Wales, Cardiff, United Kingdom
investigation type
metagenome-assembled genome
isolation_source
Annelid: Magelona johnstoni
local environmental context
marine mud
metagenomic source
annelid metagenome
number of standard tRNAs extracted
52
organism part
WHOLE ORGANISM
project name
ASG
relationship
asymbiotic, outgroup taxon
sample collection device or method
collected by hand (forceps and water bottle) after digging to approximately 15 cm
sample derived from
SAMEA115053735
sample name
92f3ae9a-dbe2-4ca7-bc5a-1d761e4e6269
scientific_name
uncultured Spirochaeta sp.
sequencing method
Pacbio Sequel II
specimen_id
QMOUL0000200
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
wdMagJohn1.Spirochaeta_sp_1