ERS11712909
Beijerinckia sp. 28-YEA-48
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia
ENA first public
2024-05-23
External Id
SAMEA14434814
INSDC center name
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC last update
2022-05-23T15:49:35Z
INSDC status
public
Submitter Id
HRSG-H13-bin-141
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
MEGAHIT; kmer set 49,69,89,109,129,149
binning parameters
coverage and kmer
binning software
MetaBAT2
collection date
2018-05-09
completeness score
64.1
completeness software
checkm
contamination score
2.19
environment (biome)
freshwater lake
environment (feature)
lake
environment (material)
fresh water
geographic location (country and/or sea)
Czech Republic
geographic location (latitude)
48.846361
geographic location (longitude)
14.487639
investigation type
metagenome-assembled genome
isolation_source
Freshwater lake
metagenomic source
freshwater metagenome
project name
PRJEB52406
sample derived from
ERS11712909
sample name
HRSG-H13-bin-141
scientific_name
Beijerinckia sp. 28-YEA-48
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach