9a2ac0a7-21dd-492f-bae3-3dfb2719551e-asg-MAGScoT_cleanbin_000002
Acetobacteraceae bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-02-05
GAL
The Sainsbury Laboratory
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
9a2ac0a7-21dd-492f-bae3-3dfb2719551e
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
THE SAINSBURY LABORATORY
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7); MetaTOR
broad-scale environmental context
terrestrial biome
collected_by
KLARA SCHARNAGL | NICK TALBOT
collecting institution
UC BERKELEY | THE SAINSBURY LABORATORY
collection date
2021-10-17
completeness score
99.34
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.5
environmental medium
adult lichen tissue
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
52.72
geographic location (longitude)
1.69
geographic location (region and locality)
East Anglia | Norfolk | Winterton on Sea | Winterton Dunes
habitat
on ground of coastal dunes just above the beach
host life stage
not applicable
host scientific name
Cladonia diversa
host sex
not applicable
host taxid
50926
identified_by
KLARA SCHARNAGL
identifier_affiliation
UC BERKELEY
investigation type
metagenome-assembled genome
isolation_source
Lichen: Cladonia diversa
local environmental context
grassland biome
metagenomic source
lichen metagenome
number of standard tRNAs extracted
53
organism part
WHOLE ORGANISM
project name
ASG
proxy voucher
NOT PROVIDED
sample collection method
selected by hand while hiking dunes stored in paper packet
sample derived from
SAMEA117660818
sample name
9a2ac0a7-21dd-492f-bae3-3dfb2719551e
scientific_name
Acetobacteraceae bacterium
sequencing method
Pacbio Sequel II
specimen_id
SL0000002
specimen_voucher
NOT_PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
glClaDive1.Acetobacteraceae_1