bovine metagenome
collection_date
2019-03-29
env_broad_scale
not applicable
env_local_scale
not applicable
env_medium
not applicable
geo_loc_name
USA
host
Bos taurus
lat_lon
not applicable
host_body_habitat
Teat apex
host_genotype
SMHJMH
host_life_stage
Postpartum
host_sex
female
host_subject_id
1708
host_taxid
9913
neg_cont_type
not applicable
pos_cont_type
not applicable
samp_collect_device
Sterile gauze square
samp_mat_process
Sterile gauze square premoistened with 1X phosphate buffer saline
samp_store_temp
-80C
copy_number_16S
4904634.249
days_in_milk
14
qiacube_batch
Q48
calving_date
2019-03-15T00:00:00
extraction_date
2019-11-22T00:00:00
technician_id
Technician D
farm_id
Farm D
sample_type
Sample
pf_clusters
35653
percent_of_lane
0.16
percent_perfect
89.24
percent_one_mismatch
10.76
megabases
21
percent_pf
100
percent_gt_q30
71.39
mean_quality
31.17
sequencing_batch
2
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated