Metagenome-Assembled Genome: SRR17798031_bin.4_MetaWRAP_v1.3_MAG
uncultured Lachnospiraceae bacterium
This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR17798031 of study SRP357125.
ENA-FIRST-PUBLIC
2023-07-13T20:34:55Z
ENA-LAST-UPDATE
2023-07-13T20:34:55Z
External Id
SAMEA114065970
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2023-07-13T20:34:55Z
INSDC last update
2023-07-13T20:34:55Z
INSDC status
public
Submitter Id
SRR17798031_bin.4_MetaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
MetaWRAP v1.3
broad-scale environmental context
Human digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2020-04/2020-11
completeness score
99.03
completeness software
CheckM
contamination score
2.42
environmental medium
faeces
geographic location (country and/or sea)
China
geographic location (latitude)
22.32
geographic location (longitude)
114.03
investigation type
metagenome-assembled genome
isolation_source
human feces metagenome
local environmental context
colon
metagenomic source
human feces metagenome
project name
aimed to study the gut microbial community of patients with invasive and non-invasive pituitary adenoma.
sample derived from
SAMN25210047
sample name
SRR17798031_bin.4_MetaWRAP_v1.3_MAG
scientific_name
uncultured Lachnospiraceae bacterium
sequencing method
HiSeq X Ten
taxonomic classification
The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__;s__
taxonomic identity marker
multi-marker approach