Metagenome-Assembled Genome: ERR4918945_bin.2_MetaWRAP_v1.3_MAG
Anaerostipes hadrus
This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4918945 of study ERP125333.
ENA-FIRST-PUBLIC
2023-07-13T16:22:59Z
ENA-LAST-UPDATE
2023-07-13T16:22:59Z
External Id
SAMEA114062595
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2023-07-13T16:22:59Z
INSDC last update
2023-07-13T16:22:59Z
INSDC status
public
Submitter Id
ERR4918945_bin.2_MetaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
MetaWRAP v1.3
broad-scale environmental context
Human digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2019-10-30
completeness score
97.32
completeness software
CheckM
contamination score
1.34
environmental medium
faeces
geographic location (country and/or sea)
China
geographic location (latitude)
39.9
geographic location (longitude)
116.3
investigation type
metagenome-assembled genome
isolation_source
human feces metagenome
local environmental context
colon
metagenomic source
human feces metagenome
project name
Mounting evidences have linked microbiome and metabolome to systemic autoimmunity and cardiovascular diseases. A rare overlapped disease, Takayasu arteritis(TA), has limited information. This study aimed to characterize discriminatory gut dysbiosis, host metabolite and lipid profiles, and their crosstalk with disease phenotypes in TA.
sample derived from
SAMEA7690035
sample name
ERR4918945_bin.2_MetaWRAP_v1.3_MAG
scientific_name
Anaerostipes hadrus
sequencing method
Illumina NovaSeq 6000
taxonomic classification
The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Anaerostipes;s__Anaerostipes hadrus
taxonomic identity marker
multi-marker approach