Metagenome-Assembled Genome: ERR9607747_bin.2_MetaWRAP_v1.3_MAG
uncultured Eubacterium sp.
This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR9607747 of study ERP023883.
ENA-FIRST-PUBLIC
2023-07-13T16:22:58Z
ENA-LAST-UPDATE
2023-07-13T16:22:58Z
External Id
SAMEA114061743
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2023-07-13T16:22:58Z
INSDC last update
2023-07-13T16:22:58Z
INSDC status
public
Submitter Id
ERR9607747_bin.2_MetaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
MetaWRAP v1.3
broad-scale environmental context
Human digestive system
broker name
EMG broker account, EMBL-EBI
collection date
2015
completeness score
75.7
completeness software
CheckM
contamination score
2.35
environmental medium
faeces
geographic location (country and/or sea)
China
geographic location (latitude)
39.0
geographic location (longitude)
122.0
investigation type
metagenome-assembled genome
isolation_source
human feces metagenome
local environmental context
colon
metagenomic source
human feces metagenome
project name
Human gut microbiota is believed to be directly or indirectly involved in cardiovascular diseases and hypertension. However, the identification and functional status of the hypertension-related gut microbe(s) have not yet been surveyed in a comprehensive manner. Here we characterized the gut microbiome in hypertension status by comparing fecal samples of 60 patients with primary hypertension and 60 gender-, age-, and body weight-matched healthy controls based on whole-metagenome shotgun sequencing.
sample derived from
SAMEA14093528
sample name
ERR9607747_bin.2_MetaWRAP_v1.3_MAG
scientific_name
uncultured Eubacterium sp.
sequencing method
Illumina HiSeq 2000
taxonomic classification
The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;s__
taxonomic identity marker
multi-marker approach