Metagenome-Assembled Genome: ERR4316498_bin.30_MetaWRAP_v1.3_MAG
Eubacterium ramulus
This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4316498 of study ERP122462.
ENA-FIRST-PUBLIC
2023-07-13T16:22:51Z
ENA-LAST-UPDATE
2023-07-13T16:22:51Z
External Id
SAMEA114062378
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2023-07-13T16:22:51Z
INSDC last update
2023-07-13T16:22:51Z
INSDC status
public
Submitter Id
ERR4316498_bin.30_MetaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
MetaWRAP v1.3
broad-scale environmental context
Human digestive system
broker name
EMG broker account, EMBL-EBI
collection date
not provided
completeness score
97.13
completeness software
CheckM
contamination score
0.59
environmental medium
faeces
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
human feces metagenome
local environmental context
colon
metagenomic source
human feces metagenome
project name
To find associations between the taxonomical and functional profile of the gut metagenome and the development of retinopathia centralis Serosa (RCS), stool samples from 19 RCS patients and 19 controls with no signs of RCS were sequenced.
sample derived from
SAMEA7037063
sample name
ERR4316498_bin.30_MetaWRAP_v1.3_MAG
scientific_name
Eubacterium ramulus
sequencing method
Illumina HiSeq 3000
taxonomic classification
The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;s__Eubacterium ramulus
taxonomic identity marker
multi-marker approach