Synechococcus sp. UW140
JJ-LI2210-88-1-m2-bin85 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae
ENA first public
2024-04-18
External Id
SAMEA14447246
INSDC center name
Biology Centre CAS
INSDC last update
2022-05-24T13:45:04Z
INSDC status
public
Submitter Id
JJ-LI2210-88-1-m2-bin85
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
MEGAHIT
binning parameters
coverage and kmer
binning software
MetaBAT2
collection date
2005-08-01
completeness score
98.1
completeness software
checkm
contamination score
0.54
environment (biome)
freshwater lake
environment (feature)
lake
environment (material)
fresh water
geographic location (country and/or sea)
Czech Republic
geographic location (latitude)
48.63339039
geographic location (longitude)
14.21395906
investigation type
metagenome-assembled genome
isolation_source
Freshwater lake
metagenomic source
freshwater metagenome
project name
PRJEB49198
sample derived from
ERS11624150
sample name
JJ-LI2210-88-1-m2-bin85
scientific_name
Synechococcus sp. UW140
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach