Thaumarchaeota archaeon CSP1-1
MAG H3T_Bin_00024 of an ammonia-oxidizing archaea reconstructed from deep-sea sediment collected from the Kermadec and Atacama trenche systems and adjacent abyssal plains in the South Pacific Ocean. The MAG was binned using CONCOCT complemented by a manual refining step in Anvi'o's interactive environment.
ENA-FIRST-PUBLIC
2023-12-22T20:37:12Z
ENA-LAST-UPDATE
2023-12-22T20:37:12Z
External Id
SAMEA114622032
INSDC center name
University of Western Brittany
INSDC first public
2023-12-22T20:37:12Z
INSDC last update
2023-12-22T20:37:12Z
INSDC status
public
Submitter Id
H3T_Bin_00024
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
Megahit (v1.1.0)
binning parameters
coverage and sequence composition
binning software
CONCOCT (v1.1.0)
broad-scale environmental context
marine benthic biome (ENVO:01000024)
collection date
2018-03-17
completeness score
92.81
completeness software
CheckM (v1.1.3)
contamination score
0
environmental medium
marine sediment (ENVO:00002113)
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
missing: sample group
geographic location (longitude)
missing: sample group
isolation_source
deep sea sediment
local environmental context
marine hadal zone (ENVO:01000028)
metagenomic source
marine sediment metagenome
project name
PRJEB60556
sample derived from
ERS3169700,ERS3169701,ERS3169726,ERS3169727,ERS3169752,ERS3169753
sample name
H3T_Bin_00024
scientific_name
Thaumarchaeota archaeon CSP1-1
taxonomic identity marker
multi-marker approach