Vibrionaceae bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-03-23
GAL
Queen Mary University of London
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
49ba06bd-b568-4ff5-bfcc-31ff2bcce7eb
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
QUEEN MARY UNIVERSITY OF LONDON
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
KATRINE WORSAAE
collecting institution
University of Copenhagen
collection date
2020-10-27
completeness score
26.63
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0
depth
1
environmental medium
adult annelid tissue
geographic location (country and/or sea)
Denmark
geographic location (latitude)
55.64
geographic location (longitude)
12.66
geographic location (region and locality)
Kastrup | The Blue Planet Aquarium | warm coral aquarium | coral sand
habitat
marine tropical coarse coral sand
host life stage
adult
host scientific name
Trochonerilla mobilis
host sex
not collected
host taxid
317908
identified_by
KATRINE WORSAAE
identifier_affiliation
University of Copenhagen
investigation type
metagenome-assembled genome
isolation_source
Annelid: Trochonerilla mobilis
local environmental context
marine biome
metagenomic source
annelid metagenome
number of standard tRNAs extracted
34
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA117852499
sample name
49ba06bd-b568-4ff5-bfcc-31ff2bcce7eb
scientific_name
Vibrionaceae bacterium
sequencing method
Pacbio Sequel II
specimen_id
QMOUL0000090
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
wuTroMobi1.Vibrionaceae_1