Rhodococcus qingshengii
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-03-23
GAL
Queen Mary University of London
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
23591a1e-bfa9-4a6c-bad8-f7ab3213c0a7
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
Nadezhda Rimskaya-Korsakova
collecting institution
Friedrich Schiller University Jena
collection date
2022-07-14
completeness score
99.94
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.0
depth
2356.0
environmental medium
adult annelid tissue
geographic location (country and/or sea)
Arctic Ocean
geographic location (latitude)
73.57
geographic location (longitude)
8.16
geographic location (region and locality)
Arctic Mid-Oceanic Ridge | Loki Castle Hydrothermal vent area
habitat
diffuse venting sedimented area
host life stage
adult
host scientific name
Sclerolinum contortum
host sex
not collected
host taxid
468923
identified_by
Nadezhda Rimskaya-Korsakova
identifier_affiliation
Friedrich Schiller University Jena
investigation type
metagenome-assembled genome
isolation_source
Annelid: Sclerolinum contortum
local environmental context
marine biome
metagenomic source
annelid metagenome
number of standard tRNAs extracted
55
organism part
WHOLE ORGANISM
project name
ASG
sample collection method
ROV
sample derived from
SAMEA117852486
sample name
23591a1e-bfa9-4a6c-bad8-f7ab3213c0a7
scientific_name
Rhodococcus qingshengii
sequencing method
Pacbio Sequel II
specimen_id
QMOUL0000235
specimen_voucher
NOT_PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
wsSclCont4.Rhodococcus_qingshengii_1