Parasynechococcus sp.
16S recovery software
PROKKA (version 1.14.6)
16s recovered
No
ENA first public
2020-01-01
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
52d40717-6edf-49b8-89ba-8ca303e6bbe4
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
DASTOOL (version 1.1.5); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Yu-Jing Chiou
collecting institution
University of New South Wales
collection date
2024-02-29
completeness score
6.01
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.05
depth
10
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Australia
geographic location (latitude)
-33.99
geographic location (longitude)
151.23
geographic location (region and locality)
New South Wales | Bare Island | Sydney
habitat
Coastal rocky reef
host life stage
adult
host scientific name
Scopalina australiensis
host sex
not collected
host taxid
3128397
identified_by
Torsten Thomas
identifier_affiliation
University of New South Wales
investigation type
metagenome-assembled genome
isolation_source
Sponge: Scopalina australiensis
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
2
organism part
WHOLE ORGANISM
project name
ToL
sample derived from
SAMEA117795579
sample name
52d40717-6edf-49b8-89ba-8ca303e6bbe4
scientific_name
Parasynechococcus sp.
sequencing method
Pacbio Sequel II
specimen_id
GHC0000329
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
odScoAust1.Parasynechococcus_sp_1