Candidatus Thiodiazotropha taylori
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-03-23
GAL
University of Vienna (Mollusc)
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
4b74cad5-77ef-4c9e-bf5c-d0659ee6c1aa
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
UNIVERSITY OF VIENNA (MOLLUSC)
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
Jean Lim
collecting institution
University of Miami
collection date
2021-06-19
completeness score
99.59
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
1.11
depth
40cm
environmental medium
adult bivalve tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
26.71
geographic location (longitude)
-82.16
geographic location (region and locality)
South Carolina | Clemson University
habitat
Halodule wrightii seagrass bed
host life stage
adult
host scientific name
Stewartia floridana
host sex
not collected
host taxid
881254
identified_by
Jean Lim
identifier_affiliation
University of Miami
investigation type
metagenome-assembled genome
isolation_source
Bivalve: Stewartia floridana
local environmental context
marine biome
metagenomic source
mollusc metagenome
number of standard tRNAs extracted
45
organism part
WHOLE ORGANISM
original collection date
2021-06-19
original collection location
USA
project name
ASG
sample derived from
SAMEA117852501
sample name
4b74cad5-77ef-4c9e-bf5c-d0659ee6c1aa
scientific_name
Candidatus Thiodiazotropha taylori
sequencing method
Pacbio Sequel II
specimen_id
VIEM1120003
specimen_voucher
NOT COLLECTED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
xbSteFlor3.Thiodiazotropha_taylori_1