Methylobacterium sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2020-01-01
GAL
The Sainsbury Laboratory
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
3d1627ce-7594-480d-bb21-0c781396ad65
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
THE SAINSBURY LABORATORY
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
DANIEL STANTON
collecting institution
UNIVERSITY OF MINNESOTA
collection date
2021-06-24
completeness score
84.05
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
2.04
depth
1
environmental medium
adult diatom tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
44.37
geographic location (longitude)
-68.56
geographic location (region and locality)
Maine | Blue Hill
habitat
Intertidal
host life stage
not applicable
host scientific name
Pelvetia canaliculata
host sex
not applicable
host taxid
74467
identified_by
ABIGAIL MEYER
identifier_affiliation
UNIVERSITY OF MINNESOTA
investigation type
metagenome-assembled genome
isolation_source
Diatom: Pelvetia canaliculata
local environmental context
marine biome
metagenomic source
algae metagenome
number of standard tRNAs extracted
44
organism part
WHOLE ORGANISM
project name
ASG
proxy voucher
NOT PROVIDED
sample collection device or method
Hand collected
sample derived from
SAMEA118003106
sample name
3d1627ce-7594-480d-bb21-0c781396ad65
scientific_name
Methylobacterium sp.
sequencing method
Pacbio Sequel II
specimen_id
SL0000006
specimen_voucher
NOT_PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
uoPelCana2.Methylobacterium_sp_1