Methanocorpusculum sp.
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2020-01-01
GAL
University of Rhode Island
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
f12bcba3-441f-4808-9b12-608884bcd7ea
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
ANNA SCHRECENGOST
collecting institution
UNIVERSITY OF RHODE ISLAND
collection date
2022-09-02
completeness score
99.02
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.65
culture_or_strain_id
OYST strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
depth
00:00:00
environmental medium
ciliate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
41.49
geographic location (longitude)
-71.42
geographic location (region and locality)
RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
habitat
marine
host life stage
vegetative cell
host scientific name
Plagiopyla sp. strain OYSTR
host sex
not applicable
host taxid
2980485
identified_by
ANNA SCHRECENGOST
identifier_affiliation
UNIVERSITY OF RHODE ISLAND
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Plagiopyla sp. strain OYSTR
local environmental context
marine biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
51
organism part
WHOLE ORGANISM
project name
ToL
sample derived from
SAMEA117843896
sample name
f12bcba3-441f-4808-9b12-608884bcd7ea
scientific_name
Methanocorpusculum sp.
sequencing method
Pacbio Sequel II
specimen_id
URI0000080
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
piPlaSpea2.Methanocorpusculum_sp_1