Isosphaeraceae bacterium
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2020-01-01
GAL
Royal Botanic Garden Edinburgh
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
c8025108-c9b7-488f-91ba-8bf3a9530f4e
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
ROYAL BOTANIC GARDEN EDINBURGH
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
terrestrial biome
collected_by
REBECCA YAHR | NATHAN CHRISMAS
collecting institution
ROYAL BOTANIC GARDEN EDINBURGH | MARINE BIOLOGICAL ASSOCIATION
collection date
2023-07-18
completeness score
99.61
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
1.16
elevation
530
environmental medium
adult lichen tissue
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
57.62
geographic location (longitude)
-5.37
geographic location (region and locality)
West Ross and Cromarty | Kinlochewe, Beinn Eighe NNR, northwest shore of Loch Allt an Daraich
habitat
on top of a boulder at edge of lochan
host life stage
vegetative structure
host scientific name
Umbilicaria deusta
host sex
other
host taxid
87276
identified_by
REBECCA YAHR
identifier_affiliation
ROYAL BOTANIC GARDEN EDINBURGH
investigation type
metagenome-assembled genome
isolation_source
Lichen: Umbilicaria deusta
local environmental context
grassland biome
metagenomic source
lichen metagenome
number of standard tRNAs extracted
56
organism part
WHOLE ORGANISM
project name
DTOL
sample collection device or method
Collected into paper packets, dissected under the microscope and flash frozen
sample derived from
SAMEA118006056
sample has part
SAMEA114788253
sample name
c8025108-c9b7-488f-91ba-8bf3a9530f4e
scientific_name
Isosphaeraceae bacterium
sequencing method
Pacbio Sequel II
specimen_id
EDTOL06319
specimen_voucher
NOT_PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
glUmbDeus1.Isosphaeraceae_1
voucher institution url
https://ror.org/0349vqz63