Alkalispirochaeta sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2020-01-01
GAL
University of Derby
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
2b52b25b-b167-4c55-8f62-08d4b698aa70
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected by
J FROMMLET | M NITSCHKE | (isolated by C BRANDAO)
collecting institution
UNIVERSITY OF AVEIRO PORTUGAL
collection date
2020-09-02
completeness score
100
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
1.2
environmental medium
dinoflagellate culture
geographic location (country and/or sea)
Portugal
geographic location (latitude)
-23.44
geographic location (longitude)
151.91
geographic location (region and locality)
Aveiro | Universidade de Aveiro
host life stage
adult
host scientific name
Halluxium pauxillum
host taxid
2705339
identified by
T LAJEUNESSE
identifier_affiliation
PENNSYLVANIA STATE UNIVERSITY (TRENCH COLLECTION) USA
investigation type
metagenome-assembled genome
isolation_source
Dinoflagellate: Halluxium pauxillum
local environmental context
marine biome
metagenomic source
dinoflagellate metagenome
number of standard tRNAs extracted
47
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA118003078
sample name
2b52b25b-b167-4c55-8f62-08d4b698aa70
scientific_name
Alkalispirochaeta sp.
sequencing method
Pacbio Sequel II
specimen id
UDUK0000043
specimen voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
pyHalPaux2.Alkalispirochaeta_sp_1