Sulfurimonas sp.
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-03-23
GAL
Queen Mary University of London
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
389e88c7-2add-435c-8c34-72f1c93b86e4
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
ROBERT VRIJENHOEK
collecting institution
MONTEREY BAY AQUARIUM RESEARCH INSTITUTE
collection date
1999-01-03
completeness score
97.76
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
1.43
depth
2599
environmental medium
adult annelid tissue
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
-17.57
geographic location (longitude)
-113.24
geographic location (region and locality)
Southern East Pacific Rise | 17S site
habitat
hydrothermal vent
host life stage
not collected
host scientific name
Alvinella caudata
host sex
not collected
host taxid
36105
identified_by
ROBERT VRIJENHOEK
identifier_affiliation
MONTEREY BAY AQUARIUM RESEARCH INSTITUTE
investigation type
metagenome-assembled genome
isolation_source
Annelid: Alvinella caudata
local environmental context
marine biome
metagenomic source
annelid metagenome
number of standard tRNAs extracted
41
organism part
WHOLE ORGANISM
project name
ASG
proxy voucher
SIO:BIC:A10948
proxy voucher url
https://sioapps.ucsd.edu/collections/bi/catalog/A10948/
sample collection method
collected by the Human Operated Vehicle Alvin
sample derived from
SAMEA117852490
sample name
389e88c7-2add-435c-8c34-72f1c93b86e4
scientific_name
Sulfurimonas sp.
sequencing method
Pacbio Sequel II
specimen_id
QMOUL0000286
specimen_voucher
NOT_APPLICABLE
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
wtAlvCaud1.Sulfurimonas_sp_2
voucher institution url
https://ror.org/04v7hvq31