Sedimenticolaceae bacterium
16S recovered
No
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2020-01-01
GAL
University of Rhode Island
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
e27f29ce-64ef-4337-a603-f591f076a3b7
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
ROXANNE BEINART
collecting institution
UNIVERSITY OF RHODE ISLAND
collection date
2016-12-04
completeness score
11.5
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.35
environmental medium
adult gastropod tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
20.82
geographic location (longitude)
144.71
geographic location (region and locality)
Chamorro vent field
habitat
Hydrothermal vent
host life stage
adult
host scientific name
Alviniconcha adamantis
host sex
not collected
host taxid
1491184
identified_by
ROXANNE BEINART
identifier_affiliation
UNIVERSITY OF RHODE ISLAND
investigation type
metagenome-assembled genome
isolation_source
Gastropod: Alviniconcha adamantis
local environmental context
marine biome
metagenomic source
mollusc metagenome
number of standard tRNAs extracted
5
organism part
WHOLE ORGANISM
project name
ASG
proxy voucher
NOT PROVIDED
sample collection device or method
Collected with remotely operated vehicle ROV JASON
sample derived from
SAMEA117959515
sample name
e27f29ce-64ef-4337-a603-f591f076a3b7
scientific_name
Sedimenticolaceae bacterium
sequencing method
Pacbio Sequel II
specimen_id
URI0000031
specimen_voucher
Y
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
xgAlvAdam14.Sedimenticolaceae_1