Flavobacteriales bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
No
ENA first public
2025-03-23
GAL
Queen Mary University of London
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
91224183-65a8-4825-bff9-298669bd2219
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
GREG ROUSE | CHARLOTTE SEID
collecting institution
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
collection date
2022-04-28
completeness score
47.1
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
6.77
depth
0
environmental medium
adult annelid tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
32.87
geographic location (longitude)
-117.25
geographic location (region and locality)
California | San Diego | Scripps Institution of Oceanography at the University of California San Diego | Marine Biology Research Division | Hubbs Hall | Greg Rouse Laboratory
habitat
marine laboratory culture
host life stage
adult
host scientific name
Ophryotrocha siberti
host sex
not collected
host taxid
864298
identified_by
GREG ROUSE
identifier_affiliation
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
investigation type
metagenome-assembled genome
isolation_source
Annelid: Ophryotrocha siberti
local environmental context
marine biome
metagenomic source
annelid metagenome
number of standard tRNAs extracted
28
organism part
WHOLE ORGANISM
project name
ASG
proxy voucher
SIO:BIC:A1152
proxy voucher url
https://sioapps.ucsd.edu/collections/bi/catalog/A1152/
sample collection method
preserved by hand from laboratory culture
sample derived from
SAMEA117852478
sample name
91224183-65a8-4825-bff9-298669bd2219
scientific_name
Flavobacteriales bacterium
sequencing method
Pacbio Sequel II
specimen_id
QMOUL0000156
specimen_voucher
NOT_APPLICABLE
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
wjOphSibe6.Flavobacteriales_2
voucher institution url
https://ror.org/04v7hvq31