Bremerella volcania
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2020-01-01
GAL
Nova Southeastern University
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
e5cf1701-acba-48ec-b791-0e97ea826092
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
ROBERT K. TRENCH
collecting institution
UNIVERSITY OF CALIFORNIA-SANTA BARBARA
collection date
not collected
completeness score
98.78
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
1.34
environmental medium
dinoflagellate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
not collected
geographic location (longitude)
not collected
geographic location (region and locality)
Florida
habitat
NOT COLLECTED
host life stage
not applicable
host scientific name
Symbiodinium microadriaticum
host sex
not applicable
host taxid
2951
identified_by
ROBERT TRENCH | TODD LAJEUNSSE
identifier_affiliation
University of California -- Santa Barbara | PENN STATE UNIVERSITY
investigation type
metagenome-assembled genome
isolation_source
Dinoflagellate: Symbiodinium microadriaticum
local environmental context
marine biome
metagenomic source
dinoflagellate metagenome
number of standard tRNAs extracted
75
organism part
WHOLE ORGANISM
project name
ASG
relationship
Mutualist
sample derived from
SAMEA117841495
sample name
e5cf1701-acba-48ec-b791-0e97ea826092
scientific_name
Bremerella volcania
sequencing method
Pacbio Sequel II
specimen_id
NSU0025401
specimen_voucher
NOT COLLECTED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
pySymMicr2.Bremerella_volcania_1