Hyphomicrobium sp. CS1GBMeth3
JJ-ME644-99-3-m2-bin104 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium
ENA first public
2024-04-18
External Id
SAMEA14447314
INSDC center name
Biology Centre CAS
INSDC last update
2022-05-24T13:45:05Z
INSDC status
public
Submitter Id
JJ-ME644-99-3-m2-bin104
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
MEGAHIT
binning parameters
coverage and kmer
binning software
MetaBAT2
collection date
2018-10-17
completeness score
84.87
completeness software
checkm
contamination score
0.95
environment (biome)
freshwater lake
environment (feature)
lake
environment (material)
fresh water
geographic location (country and/or sea)
Czech Republic
geographic location (latitude)
50.17907278
geographic location (longitude)
12.586791
investigation type
metagenome-assembled genome
isolation_source
Freshwater lake
metagenomic source
freshwater metagenome
project name
PRJEB49198
sample derived from
ERS11624163
sample name
JJ-ME644-99-3-m2-bin104
scientific_name
Hyphomicrobium sp. CS1GBMeth3
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach