Marinobacter salsuginis
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2020-01-01
GAL
Nova Southeastern University
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
aeb80283-9322-469b-ab1f-fd9718f20bd7
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
R.A. KINZIE
collecting institution
UNIVERSITY OF HAWAI'I AT MANOA
collection date
2022-05-04
completeness score
35.45
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.29
culture_or_strain_id
Cass-EL1
environmental medium
dinoflagellate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
40.80
geographic location (longitude)
-77.86
geographic location (region and locality)
PENNSYLVANIA | PENNSYLVANIA STATE UNIVERSITY | DEPARTMENT OF BIOLOGY | LAJEUNESSE LAB
habitat
Growth medium
host life stage
vegetative cell
host scientific name
Symbiodinium tridacnidarum
host sex
not applicable
host taxid
1602974
identified_by
MARY ALICE COFFROTH
identifier_affiliation
UNIVERSITY OF BUFFALO
investigation type
metagenome-assembled genome
isolation_source
Dinoflagellate: Symbiodinium tridacnidarum
local environmental context
marine biome
metagenomic source
dinoflagellate metagenome
number of standard tRNAs extracted
12
organism part
WHOLE ORGANISM
original collection location
UNITED STATES OF AMERICA | FLORIDA
project name
ASG
sample collection method
culture
sample derived from
SAMEA117843944
sample name
aeb80283-9322-469b-ab1f-fd9718f20bd7
scientific_name
Marinobacter salsuginis
sequencing method
Pacbio Sequel II
specimen_id
NSU0026101
specimen_voucher
NOT_PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
pySymTrid1.Marinobacter_salsuginis_1