Planctomycetota bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2020-01-01
GAL
Nova Southeastern University
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
c745feeb-1740-47bf-bbe2-8d90712da449
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
R.A. KINZIE
collecting institution
UNIVERSITY OF HAWAI'I AT MANOA
collection date
2022-05-04
completeness score
97.73
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
1.14
culture_or_strain_id
Cass-EL1
environmental medium
dinoflagellate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
40.80
geographic location (longitude)
-77.86
geographic location (region and locality)
PENNSYLVANIA | PENNSYLVANIA STATE UNIVERSITY | DEPARTMENT OF BIOLOGY | LAJEUNESSE LAB
habitat
Growth medium
host life stage
vegetative cell
host scientific name
Symbiodinium tridacnidarum
host sex
not applicable
host taxid
1602974
identified_by
MARY ALICE COFFROTH
identifier_affiliation
UNIVERSITY OF BUFFALO
investigation type
metagenome-assembled genome
isolation_source
Dinoflagellate: Symbiodinium tridacnidarum
local environmental context
marine biome
metagenomic source
dinoflagellate metagenome
number of standard tRNAs extracted
63
organism part
WHOLE ORGANISM
original collection location
UNITED STATES OF AMERICA | FLORIDA
project name
ASG
sample collection method
culture
sample derived from
SAMEA117843944
sample name
c745feeb-1740-47bf-bbe2-8d90712da449
scientific_name
Planctomycetota bacterium
sequencing method
Pacbio Sequel II
specimen_id
NSU0026101
specimen_voucher
NOT_PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
pySymTrid1.Planctomycetota_1