Bacteroidia bacterium
16S recovered
No
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2020-01-01
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
c3a266bb-8858-4787-ab95-10d773b389d0
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
DASTOOL (version 1.1.5); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
WILLIAM GROSSMAN
collecting institution
MARINE BIOLOGICAL LABORATORY
collection date
2024-05-20
completeness score
26.23
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
2.2
environmental medium
adult sponge tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
41.51
geographic location (longitude)
-70.70
geographic location (region and locality)
Massachusettes | Nonamesset Island
habitat
a floating dock on Nonamesset Island, 52F
host life stage
juvenile
host scientific name
Leucosolenia botryoides
host sex
not provided
host taxid
2204103
identified_by
WILLIAM GROSSMAN
identifier_affiliation
MARINE BIOLOGICAL LABORATORY
investigation type
metagenome-assembled genome
isolation_source
Sponge: Leucosolenia botryoides
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
9
organism part
WHOLE ORGANISM
project name
ToL
sample derived from
SAMEA118003030
sample name
c3a266bb-8858-4787-ab95-10d773b389d0
scientific_name
Bacteroidia bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000357
specimen_voucher
NOT COLLECTED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
ocLeuBotr1.Bacteroidia_2