Candidatus Absconditicoccaceae bacterium
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2020-01-01
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
0bb9ec3e-95e5-4f08-bda0-04179626886c
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
DASTOOL (version 1.1.5); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
WILLIAM GROSSMAN
collecting institution
MARINE BIOLOGICAL LABORATORY
collection date
2024-05-20
completeness score
58.98
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
7.76
environmental medium
adult sponge tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
41.51
geographic location (longitude)
-70.70
geographic location (region and locality)
Massachusettes | Nonamesset Island
habitat
a floating dock on Nonamesset Island, 52F
host life stage
juvenile
host scientific name
Leucosolenia botryoides
host sex
not provided
host taxid
2204103
identified_by
WILLIAM GROSSMAN
identifier_affiliation
MARINE BIOLOGICAL LABORATORY
investigation type
metagenome-assembled genome
isolation_source
Sponge: Leucosolenia botryoides
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
53
organism part
WHOLE ORGANISM
project name
ToL
sample derived from
SAMEA118003030
sample name
0bb9ec3e-95e5-4f08-bda0-04179626886c
scientific_name
Candidatus Absconditicoccaceae bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000357
specimen_voucher
NOT COLLECTED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
ocLeuBotr1.Absconditicoccaceae_1