Thiolapillus brandeum
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-03-23
GAL
University of Vienna (Mollusc)
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
1cd1cc2c-385b-4686-9acf-4f2cbc7337d6
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
UNIVERSITY OF VIENNA (MOLLUSC)
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
Jean Lim
collecting institution
University of Miami
collection date
2021-06-19
completeness score
84
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
1.93
depth
40cm
environmental medium
adult bivalve tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
26.71
geographic location (longitude)
-82.16
geographic location (region and locality)
South Carolina | Clemson University
habitat
Halodule wrightii seagrass bed
host life stage
adult
host scientific name
Stewartia floridana
host sex
not collected
host taxid
881254
identified_by
Jean Lim
identifier_affiliation
University of Miami
investigation type
metagenome-assembled genome
isolation_source
Bivalve: Stewartia floridana
local environmental context
marine biome
metagenomic source
mollusc metagenome
number of standard tRNAs extracted
35
organism part
WHOLE ORGANISM
original collection date
2021-06-19
original collection location
USA
project name
ASG
sample derived from
SAMEA117852501
sample name
1cd1cc2c-385b-4686-9acf-4f2cbc7337d6
scientific_name
Thiolapillus brandeum
sequencing method
Pacbio Sequel II
specimen_id
VIEM1120003
specimen_voucher
NOT COLLECTED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
xbSteFlor3.Thiolapillus_brandeum_1