Flavicella sp.
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-03-23
GAL
Queen Mary University of London
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
c9f9d35b-e432-4d16-9f7a-f6b54bcc9902
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
GREG ROUSE | CHARLOTTE SEID
collecting institution
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
collection date
2022-04-28
completeness score
90.0
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.84
depth
0
environmental medium
adult annelid tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
32.87
geographic location (longitude)
-117.25
geographic location (region and locality)
California | San Diego | Scripps Institution of Oceanography at the University of California San Diego | Marine Biology Research Division | Hubbs Hall | Greg Rouse Laboratory
habitat
marine laboratory culture
host life stage
adult
host scientific name
Ophryotrocha siberti
host sex
not collected
host taxid
864298
identified_by
GREG ROUSE
identifier_affiliation
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
investigation type
metagenome-assembled genome
isolation_source
Annelid: Ophryotrocha siberti
local environmental context
marine biome
metagenomic source
annelid metagenome
number of standard tRNAs extracted
45
organism part
WHOLE ORGANISM
project name
ASG
proxy voucher
SIO:BIC:A1152
proxy voucher url
https://sioapps.ucsd.edu/collections/bi/catalog/A1152/
sample collection method
preserved by hand from laboratory culture
sample derived from
SAMEA117852478
sample name
c9f9d35b-e432-4d16-9f7a-f6b54bcc9902
scientific_name
Flavicella sp.
sequencing method
Pacbio Sequel II
specimen_id
QMOUL0000156
specimen_voucher
NOT_APPLICABLE
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
wjOphSibe6.Flavicella_sp_1
voucher institution url
https://ror.org/04v7hvq31