Marinobacter salsuginis
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2020-01-01
GAL
University of Derby
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
c5b98774-f640-4618-98ba-8f7130e66a35
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
M POLNE-FULLER
collecting institution
PENNSYLVANIA STATE UNIVERSITY (TRENCH COLLECTION) USA
collection date
2020-09-02
completeness score
100
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.22
environmental medium
dinoflagellate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
34.40
geographic location (longitude)
-119.84
geographic location (region and locality)
Florida | University of South Florida
habitat
NOT APPLICABLE
host life stage
adult
host scientific name
Effrenium voratum
host sex
not applicable
host taxid
2562239
identified_by
T LAJEUNESSE
identifier_affiliation
PENNSYLVANIA STATE UNIVERSITY (TRENCH COLLECTION) USA
investigation type
metagenome-assembled genome
isolation_source
Dinoflagellate: Effrenium voratum
local environmental context
marine biome
metagenomic source
dinoflagellate metagenome
number of standard tRNAs extracted
50
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA118003059
sample name
c5b98774-f640-4618-98ba-8f7130e66a35
scientific_name
Marinobacter salsuginis
sequencing method
Pacbio Sequel II
specimen_id
UDUK0000036
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
pyEffVora5.Marinobacter_salsuginis_1