soil metagenome
NA
collection_date
2023-05-29
depth
0-7.5 cm
elev
not collected
env_broad_scale
savanna biome [ENVO_01000178]
env_local_scale
oak woodland [ENVO_01000239]|quercus douglasii [NCBITaxon_465759]
env_medium
savanna soil [ENVO_00005746]
geo_loc_name
USA:California,Napa County
lat_lon
38.488857 N 122.151742 W
agrochem_addition
NA
al_sat
NA
al_sat_meth
NA
altitude
NA
annual_precpt
27.8 in.
annual_temp
59.7 F
collection_method
NA
crop_rotation
NA
cur_land_use
NA
cur_vegetation
NA
cur_vegetation_meth
NA
drainage_class
excessively drained
extreme_event
NA
fao_class
Luvisols|Leptosols
fire
2016-07-31T00:00:00
flooding
NA
heavy_metals
NA
heavy_metals_meth
NA
horizon_meth
NA
isolation_source
NA
link_addit_analys
NA
link_class_info
NA
link_climate_info
NA
local_class
lithic haploxerolls|typic haploxeralfs|typic dystroxerepts|lithic haploxerepts
local_class_meth
https://www.nrcs.usda.gov/resources/guides-and-instructions/soil-taxonomy
microbial_biomass
5620.31 ng lipid/g soil
microbial_biomass_meth
https://link.springer.com/article/10.1007/Bf00384433
misc_param
NA
neg_cont_type
NA
omics_observ_id
NA
ph
6.94
ph_meth
electrode 2:1 0.01M CaCl2
pool_dna_extracts
no
pos_cont_type
NA
previous_land_use
NA
previous_land_use_meth
NA
profile_position
NA
rel_to_oxygen
NA
salinity_meth
NA
samp_collect_device
NA
samp_mat_process
NA
samp_size
589 cm^3
samp_vol_we_dna_ext
2.0 g
season_precpt
NA
season_temp
NA
sieving
4 mm
size_frac
NA
slope_aspect
NA
slope_gradient
NA
soil_horizon
NA
soil_text_measure
36.09% sand 35.99% silt 27.92% clay|Clay Loam
soil_texture_meth
hydrometer
soil_type
lithic haploxerolls|typic haploxeralfs|typic dystroxerepts|lithic haploxerepts
soil_type_meth
https://www.nrcs.usda.gov/resources/guides-and-instructions/soil-taxonomy
source_material_id
NA
store_cond
dry ice/-80C freezer;5 months
tillage
NA
tot_n_meth
https://acsess.onlinelibrary.wiley.com/doi/10.2136/sssabookser5.3.c34
tot_nitro
0.0034
tot_nitro_cont_meth
https://acsess.onlinelibrary.wiley.com/doi/10.2136/sssabookser5.3.c34
tot_org_c_meth
https://acsess.onlinelibrary.wiley.com/doi/10.2136/sssabookser5.3.c34
tot_org_carb
0.0441
water_content
0.06
water_content_soil_meth
gravimetric; 24hr at 105C
nucleic_acid
DNA
amplification
PCR_ITS
DNA_ng_per_uL
31.13
RNA_ng_per_uL
NA
core_top_depth_cm
0
core_bottom_depth_cm
7.5
Tree_Health
dead
bulk_density_g_cm3
0.87
bulk_density_notes
Some roots, fire layer
Hue
10YR
Value_dry
5
Value_wet
3
Chroma_dry
3
Chroma_wet
2
TextureClass
ClLo
Total_Exchange_Capacity_meq_per_100_g
25.84
organic_matter_percent
7.36
S_ppm
17
P_mg_per_kg
64
Ca_mg_per_kg
4192
Mg_mg_per_kg
327
K_mg_per_kg
411
Na_mg_per_kg
16
B_mg_per_kg
1.09
Fe_mg_per_kg
138
Mn_mg_per_kg
124
Cu_mg_per_kg
2.74
Zn_mg_per_kg
4
Al_mg_per_kg
442
Bray_I_P_ppm
43
C_per_N_Ratio
12.97
DNA_qubit_ng_g_soil
1537.842523
RNA_qubit_ng_g_soil
1615.401558
PLFA_Total_Living_Microbial_Biomass_ng_g
5620.31
PLFA_Total_Bacteria_ng_g
1570.77
PLFA_Total_Fungi_ng_g
1177.81
PLFA_Undifferentiated_ng_g
2745.04
PLFA_Fungi_Bacteria_Ratio_ng_g
0.75
Tree
T07
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.soil