uncultured Rhodothermales bacterium
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-03-30T15:21:04Z
ENA-LAST-UPDATE
2023-11-20T15:36:04Z
External Id
SAMEA112852654
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC first public
2023-03-30T15:21:04Z
INSDC last update
2023-11-20T15:36:04Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
7987c2e5-0c24-4dbf-ab2b-41a34acd2949
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
Hifiasm (version 0.16.1-r375)
binning parameters
coverage; graph; hic-mapping
binning software
MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected by
Manuel Maldonado
collecting institution
CEAB-CSIC
collection date
2021-02-01
completeness score
65.84
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
1.64
depth
11
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Spain
geographic location (latitude)
41.67333
geographic location (longitude)
2.80314
geographic location (region and locality)
Girona|Blanes
habitat
rocky bottom
host scientific name
Chondrosia reniformis
host taxid
68574
identified by
Manuel Maldonado
identifier_affiliation
CEAB-CSIC
investigation type
metagenome-assembled genome
isolation_source
Sponge: Chondrosia reniformis
lifestage
adult
local environmental context
marine benthic biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
31
organism part
WHOLE ORGANISM
project name
ASG
relationship
beneficial
sample derived from
SAMEA112852644
sample name
7987c2e5-0c24-4dbf-ab2b-41a34acd2949
scientific_name
uncultured Rhodothermales bacterium
sequencing method
Pacbio Sequel II
sex
NOT_SPECIFIED
specimen id
GHC0000189
specimen voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
odChoReni1.Rhodothermales_1