Francisellaceae bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2020-01-01
GAL
University of California
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
68c6a2ab-b77b-4df7-8132-c5ebcc099df2
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
UNIVERSITY OF CALIFORNIA
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Michael Dawson
collecting institution
UC Merced
collection date
2022-07-30
completeness score
73.56
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
4.13
depth
4.7
environmental medium
adult xenacoelomorph tissue
geographic location (country and/or sea)
Palau
geographic location (latitude)
7.33
geographic location (longitude)
134.43
geographic location (region and locality)
Koror | Hafa Adai Reef
habitat
Reef
host life stage
adult
host scientific name
Haplodiscus bocki
host sex
not collected
host taxid
2916798
identified_by
Michael Dawson
identifier_affiliation
UC Merced
investigation type
metagenome-assembled genome
isolation_source
Xenacoelomorph: Haplodiscus bocki
local environmental context
marine biome
metagenomic source
invertebrate metagenome
number of standard tRNAs extracted
24
organism part
WHOLE ORGANISM
original collection date
2022-07-29
original collection location
Palau | Koror | Hafa Adai Reef
original geographic location (latitude)
7.3253
original geographic location (longitude)
134.4318
project name
ASG
sample collection method
by hand
sample derived from
SAMEA117843992
sample name
68c6a2ab-b77b-4df7-8132-c5ebcc099df2
scientific_name
Francisellaceae bacterium
sequencing method
Pacbio Sequel II
specimen_id
UCALI0000012
specimen_voucher
NOT_APPLICABLE
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
txHapBock2.Francisellaceae_1