Patescibacteria group bacterium
Patescibacteria assembled from Lake Ikeda
ENA first public
2024-05-02
External Id
SAMEA14306377
INSDC center name
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC last update
2022-05-02T20:59:52Z
INSDC status
public
Submitter Id
Ike-200m-22
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters
coverage and kmer
binning software
MetaBAT2
collection date
2017-11-25
completeness score
61.69
completeness software
checkm
contamination score
0.99
environment (biome)
freshwater lake
environment (feature)
lake
environment (material)
fresh water
geographic location (country and/or sea)
Japan
geographic location (latitude)
31.233333
geographic location (longitude)
130.566667
investigation type
metagenome-assembled genome
isolation_source
Freshwater lake
metagenomic source
freshwater metagenome
project name
PRJEB35640
sample derived from
ERS6344566
sample name
Ike-200m-22
scientific_name
Patescibacteria group bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach