Streptococcus parasanguinis
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR14736661 of study SRP322767.
ENA first public
2025-04-10
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR14736661_concoct_17
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit_v1.2.9
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v1.0.0
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2020-04-01/2021-03-01
completeness score
50.56
completeness software
CheckM2_v1.0.1
contamination score
3.98
environmental medium
tongue
geographic location (country and/or sea)
USA
geographic location (latitude)
missing: third party data
geographic location (longitude)
missing: third party data
investigation type
metagenome-assembled genome
isolation_source
human oral metagenome
local environmental context
oral cavity
metagenomic source
human oral metagenome
project name
The severe acute respiratory syndrome coronavirus 2 caused the pandemic Coronavirus Disease 2019, or COVID-19. Many infected individuals exhibit prolonged symptoms or Long COVID even after having cleared their infection. Long COVID is thought to be linked to immune dysregulation due to harmful inflammation, with the exact causes being unknown. We examined the relationship between the oral microbiome and the duration of Long COVID symptoms among a cohort of patients admitted to the Emergency Department.
sample derived from
SAMN19571623
sample name
SRR14736661_concoct_17
scientific_name
Streptococcus parasanguinis
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach