Rhodococcus qingshengii
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2020-01-01
GAL
University of Rhode Island
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
3409a688-e6e1-4b12-8e22-4bfab7492586
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
ROXANNE BEINART
collecting institution
UNIVERSITY OF RHODE ISLAND
collection date
2016-12-11
completeness score
95.42
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.18
environmental medium
adult gastropod tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
16.96
geographic location (longitude)
144.87
geographic location (region and locality)
Hafa Adai vent field
habitat
Hydrothermal vent
host life stage
adult
host scientific name
Alviniconcha hessleri
host sex
not collected
host taxid
12928
identified_by
ROXANNE BEINART
identifier_affiliation
UNIVERSITY OF RHODE ISLAND
investigation type
metagenome-assembled genome
isolation_source
Gastropod: Alviniconcha hessleri
local environmental context
marine biome
metagenomic source
mollusc metagenome
number of standard tRNAs extracted
55
organism part
WHOLE ORGANISM
project name
ASG
proxy voucher
NOT PROVIDED
sample collection device or method
Collected with remotely operated vehicle ROV JASON
sample derived from
SAMEA117959522
sample name
3409a688-e6e1-4b12-8e22-4bfab7492586
scientific_name
Rhodococcus qingshengii
sequencing method
Pacbio Sequel II
specimen_id
URI0000021
specimen_voucher
Y
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
xgAlvHess14.Rhodococcus_qingshengii_1