Metagenome-Assembled Genome: SRR11085295_bin.15_MetaWRAP_v1.3_MAG
Prevotella veroralis
INSDC center name
EMG
Submitter Id
SRR11085295_bin.15_MetaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
MetaWRAP v1.3
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2012
completeness score
53.64
completeness software
CheckM
contamination score
2.24
environmental medium
subgingival plaque
geographic location (country and/or sea)
USA
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
oral metagenome
local environmental context
oral cavity
metagenomic source
oral metagenome
project name
The samples within this Bioproject represents the oral metagenome (whole genome shotgun (WGS) sequencing) collected from the Native American Indian tribes of South Dakota. The samples were collected from the dental plaque of children aged 5-18 years old. The samples are collected from 5 different conditions: healthy, light caries, moderate caries, severe caries, and periodontal caries. The project goal is to identify the species level characterization of the bacterial community present in the oral metagenome.
sample derived from
SAMN13714813
sample name
SRR11085295_bin.15_MetaWRAP_v1.3_MAG
scientific_name
Prevotella veroralis
sequencing method
Illumina MiSeq
taxonomic classification
The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella veroralis
taxonomic identity marker
multi-marker approach