f4749284-7ece-4f1a-bfa4-5d499b9e3234-asg-bin.10
Oceaniradius stylonematis
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA first public
2024-01-18
GAL
University of Derby
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
f4749284-7ece-4f1a-bfa4-5d499b9e3234
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG
binning parameters
coverage; graph
binning software
MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected by
ALJADA | ALVAREZ-ROA
collecting institution
Australian Institute of Marine Science
collection date
2020-12-10
completeness score
99.19
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.39
environmental medium
dinoflagellate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
not collected
geographic location (longitude)
not collected
geographic location (region and locality)
University Park, PA | Pennsylvania State University
host life stage
vegetative cell
host scientific name
Gerakladium sp. JEP-2021
host taxid
2813772
identified by
JOHN PARKINSON
identifier_affiliation
UNIVERSITY OF SOUTH FLORIDA
investigation type
metagenome-assembled genome
isolation_source
Dinoflagellate: Gerakladium sp. JEP-2021
local environmental context
marine coral reef biome
metagenomic source
dinoflagellate metagenome
number of standard tRNAs extracted
44
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA115112818
sample name
f4749284-7ece-4f1a-bfa4-5d499b9e3234
scientific_name
Oceaniradius stylonematis
sequencing method
Pacbio Sequel II
specimen id
UDUK0000095
specimen voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
pyGerJepo1.Oceaniradius_stylonematis_1