bc5d7161-f0e0-4005-9054-6f16412713ce-asg-MAGScoT_cleanbin_000001
Spirochaetia bacterium
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA first public
2024-01-18
GAL
Queen Mary University of London
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
bc5d7161-f0e0-4005-9054-6f16412713ce
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
barcoding center
NOT PROVIDED
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected_by
PHIL ZEROFSKI
collecting institution
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
collection date
not provided
completeness score
96
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0
environmental medium
adult annelid tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
32.89
geographic location (longitude)
-117.26
geographic location (region and locality)
California | offshore San Diego | Torrey Pines artificial reef
habitat
Seafloor. Associated with mussels Mytilus californianus.
host life stage
adult
host scientific name
Phyllodoce medipapillata
host sex
not collected
host taxid
868040
identified_by
GREG ROUSE
identifier_affiliation
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
investigation type
metagenome-assembled genome
isolation_source
Annelid: Phyllodoce medipapillata
local environmental context
marine benthic biome
metagenomic source
annelid metagenome
number of standard tRNAs extracted
45
organism part
WHOLE ORGANISM
project name
ASG
proxy voucher
SIO:BIC:A5913
proxy voucher url
https://sioapps.ucsd.edu/collections/bi/catalog/A5913/
sample collection device or method
hand-collected via SCUBA diving
sample derived from
SAMEA115116693
sample name
bc5d7161-f0e0-4005-9054-6f16412713ce
scientific_name
Spirochaetia bacterium
sequencing method
Pacbio Sequel II
specimen_id
QMOUL0000165
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
wpPhyMedi1.Spirochaetia_1
voucher institution url
https://ror.org/04v7hvq31