b3ef3d74-a06f-4f1d-bd89-a4b310ebceaa-asg-bin.11
Pseudomonadales bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
No
ENA first public
2025-02-20
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
b3ef3d74-a06f-4f1d-bd89-a4b310ebceaa
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
SALLY LEYS
collecting institution
University of Alberta
collection date
2024-04-02
completeness score
30.71
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.75
depth
1
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Canada
geographic location (latitude)
48.83
geographic location (longitude)
-125.14
geographic location (region and locality)
BRITISH COLUMBIA | BAMFIELD | BAMFIELD MARINE SCIENCES CENTRE
habitat
INTERTIDAL/SUBTIDAL/ROCK/DOCK EXPOSED AND SHELTERED
host life stage
adult
host scientific name
Haliclona cinerea
host sex
not collected
host taxid
178541
identified_by
SALLY LEYS
identifier_affiliation
University of Alberta
investigation type
metagenome-assembled genome
isolation_source
Sponge: Haliclona cinerea
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
12
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA117740028
sample name
b3ef3d74-a06f-4f1d-bd89-a4b310ebceaa
scientific_name
Pseudomonadales bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000352
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
odHalCine1.Pseudomonadales_1