Metagenome-assembled genome: SRP253650_co1_3
uncultured Candidatus Saccharibacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11455656,SRR11455659 of study SRP253650.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP253650_co1_3
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2017-09-03
completeness score
64.08
completeness software
CheckM2;1.0.2;default
contamination score
1.94
environmental medium
aquatic
geographic location (country and/or sea)
Atlantic Ocean
geographic location (latitude)
43.8942
geographic location (longitude)
-63.076
investigation type
metagenome-assembled genome
isolation_source
marine metagenome
local environmental context
marine biome
metagenomic source
marine metagenome
project name
This dataset was collected during the expeditions 'Hudson2016-019', and 'MLB2017001' of the Canadian Coast Guard Ships (CCGS) Hudson and Martha L. Black in 2016 and 2017. It includes amplicon raw sequence reads (V3V4 region 16S rRNA gene survey) of seawater, sediment, biofilm and deep-sea sponge-associated microbes. The sponge species Vazella pourtalesii is covered.
sample derived from
SAMN14422897,SAMN14422896
sample name
SRP253650_co1_3
scientific_name
uncultured Candidatus Saccharibacteria bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach