Metagenome-assembled genome: SRP239594_co1_5
uncultured Planctomycetaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10836660,SRR10836661 of study SRP239594.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP239594_co1_5
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2011-03-25
completeness score
75.6
completeness software
CheckM2;1.0.2;default
contamination score
2.05
environmental medium
aquatic
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
8.68
geographic location (longitude)
-84.03
investigation type
metagenome-assembled genome
isolation_source
marine sediment metagenome
local environmental context
marine sediment biome
metagenomic source
marine sediment metagenome
project name
In this project, we reconstruct microbial genomes from the metagenome sequencing data from shallow sediments in core U1379B collected from the Costa Rica Margin during IODP Expedition 334. We used these data to discuss the diversity and potential metabolic functions of microbes especially a couple of novel benthic archaea in subduction zone sediments.
sample derived from
SAMN13740709,SAMN13740703
sample name
SRP239594_co1_5
scientific_name
uncultured Planctomycetaceae bacterium
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach