Metagenome-assembled genome: binchicken_co289_90
uncultured Hyphomicrobiales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs DRR083415,SRR5788130 of study DRP005676.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co289_90
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
75.45
completeness software
CheckM2;1.0.2;default
contamination score
3.2
environmental medium
aquatic
geographic location (country and/or sea)
not applicable
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
marine metagenome
local environmental context
marine biome
metagenomic source
marine metagenome
project name
In the present study, with the aim of understanding the effects of the gigantic earthquake and its resulting tsunami in Tohoku area on marine biodiversity and ecosystem, we develop a meta-genomic method of observing a variety of marine microorganisms at once and its practical application to environmental monitoring. Utilizing the methods developed, we make assessment of marine environments by comparing the diversity of microorganisms in spots along the sea coasts between Tohoku area and other areas. The outcome of the present study is expected to make contributions to deeper understanding of marine ecosystem of microorganisms.
sample derived from
SAMD00070667,SAMN07136910
sample name
binchicken_co289_90
scientific_name
uncultured Hyphomicrobiales bacterium
sequencing method
Illumina HiSeq 2500,NextSeq 550
taxonomic identity marker
multi-marker approach