Metagenome-assembled genome: binchicken_co347_80
uncultured Nocardioides sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR8893623 of study SRP192515.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co347_80
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2017-06-13
completeness score
100
completeness software
CheckM2;1.0.2;default
contamination score
0.05
environmental medium
aquatic
geographic location (country and/or sea)
China
geographic location (latitude)
31.80000000
geographic location (longitude)
118.50000000
investigation type
metagenome-assembled genome
isolation_source
wastewater metagenome
local environmental context
wastewater biome
metagenomic source
wastewater metagenome
project name
Integrated metagenomic and metatranscriptomic analyses of ultraviolet disinfection effects on antibiotic resistance genes during wastewater treatment
sample derived from
SAMN11412378
sample name
binchicken_co347_80
scientific_name
uncultured Nocardioides sp.
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach