Metagenome-assembled genome: ERP119702_co3_206
uncultured Bifidobacterium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR3856787 of study ERP119702.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
ERP119702_co3_206
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
aquatic
collection date
2016-09-14
completeness score
80.35
completeness software
CheckM2;1.0.2;default
contamination score
0.73
environmental medium
aquatic
geographic location (country and/or sea)
Switzerland
geographic location (latitude)
47.09250000
geographic location (longitude)
8.48910000
investigation type
metagenome-assembled genome
isolation_source
freshwater metagenome
local environmental context
freshwater biome
metagenomic source
freshwater metagenome
project name
DNA and total RNA was extracted from water from of the anoxic hypolimnion of a freshwater lake in two years (2016, 2018). DNA was used for metagenomic sequencing (2x250 bp, Illumina HiSeq 2500). For metatranscriptome sequencing, total RNA was subjected to rRNA depletion followed by reverse transcription and sequencing of cDNA (1x150 bp, Illumina HiSeq 3000).
sample derived from
SAMN07599904
sample name
ERP119702_co3_206
scientific_name
uncultured Bifidobacterium sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach