Metagenome-assembled genome: SRP216583_co1_103
uncultured Acidobacteriota bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9849936,SRR9849951 of study SRP216583.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP216583_co1_103
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
terrestrial
collection date
not provided
completeness score
84.11
completeness software
CheckM2;1.0.2;default
contamination score
3.32
environmental medium
terrestrial
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
microbial mat metagenome
local environmental context
microbial mat biome
metagenomic source
microbial mat metagenome
project name
This BioProject includes 16S 5-pass filtered raw reads from the PacBio, raw metagenome reads, and raw metatranscriptome reads, all obtained from Fe mats at hydrothermal vents from Loihi Seamount (Hawaii), Urashima Vent Field (Southern Mariana Trough), and from Rainbow, TAG, and Snake Pit (Mid-Atlantic Ridge).
sample derived from
SAMN12330916,SAMN12330923
sample name
SRP216583_co1_103
scientific_name
uncultured Acidobacteriota bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach