Metagenome-assembled genome: SRP313737_co1_195
uncultured Lachnospiraceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14160763,SRR14160765 of study SRP313737.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP313737_co1_195
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
host
collection date
2018-03
completeness score
99.24
completeness software
CheckM2;1.0.2;default
contamination score
0.21
environmental medium
host
geographic location (country and/or sea)
China
geographic location (latitude)
32.62
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
local environmental context
gut biome
metagenomic source
gut metagenome
project name
Nine fecal metagenomes of captive Rhinopithecus roxellana, 9 fecal metagenomes of wild Rhinopithecus roxellana, and 10 fecal metagenomes of Macaca mulatta. Our aim was to determine whether the gut microbiota provided any help for R. roxellana in the adaptation to a captive environment.
sample derived from
SAMN18524293,SAMN18524291
sample name
SRP313737_co1_195
scientific_name
uncultured Lachnospiraceae bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach