Metagenome-assembled genome: SRP220891_co5_70
uncultured Bordetella sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10083250,SRR10083298 of study SRP220891.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP220891_co5_70
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2017-11
completeness score
77.33
completeness software
CheckM2;1.0.2;default
contamination score
2.57
environmental medium
aquatic
geographic location (country and/or sea)
China
geographic location (latitude)
28.22
geographic location (longitude)
115.47
investigation type
metagenome-assembled genome
isolation_source
wastewater metagenome
local environmental context
wastewater biome
metagenomic source
wastewater metagenome
project name
metagenome sequencing
sample derived from
SAMN12696750,SAMN12696739
sample name
SRP220891_co5_70
scientific_name
uncultured Bordetella sp.
sequencing method
HiSeq X Ten
taxonomic identity marker
multi-marker approach