Metagenome-assembled genome: SRP107338_co1_24
uncultured Prosthecobacter sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5576004,SRR5576005 of study SRP107338.
assembly software
metaSPAdes;3.15.4;default
binning software
MetaBAT2;2.15;default
organism
uncultured Brevifollis sp.
broad-scale environmental context
engineered
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
collection date
not provided
sample derived from
SAMN06957055,SAMN06957054
geographic location (longitude)
-87.68
taxonomic identity marker
multi-marker approach
binning parameters
coverage and kmer
completeness score
86.0
contamination score
6.73
environmental medium
engineered
geographic location (latitude)
42.06
scientific_name
uncultured Brevifollis sp.
investigation type
metagenome-assembled genome
local environmental context
bioreactor biome
metagenomic source
bioreactor metagenome
project name
This project focus on a Denitrifying Candidatus Accumulibacter enrichment culture that weâ€™ve shown to be capable of producing substantial nitrous oxide when nitrite is present as the electron acceptor for denitrification. Shotgun metagenomic sequencing and genome-resolved metagenome analysis were applied to investigate the genomic nitrogen transformation potential for two Accumulibacter genomes as well as flanking bacterial genomes.
sequencing method
Illumina HiSeq 4000
completeness software
CheckM2;1.0.2;default
geographic location (country and/or sea)
USA
isolation_source
bioreactor metagenome