Metagenome-assembled genome: SRP302895_co1_475
uncultured Alphaproteobacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13608702,SRR13608705 of study SRP302895.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP302895_co1_475
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
93.05
completeness software
CheckM2;1.0.2;default
contamination score
0.49
environmental medium
aquatic
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
metagenome
project name
Antimicrobial resistance (AMR) is a global health issue. The impact of sub-lethal concentrations of antibiotics on antimicrobial resistance gene (ARG) spread in the environment is still unclear. In this study we used semi-realistic flume systems to mimic the riverine environment and we monitored the effect of low concentration of sulfamethoxazole on the microbial community composition and function (i.e. ARG).
sample derived from
SAMN17394051,SAMN17394049
sample name
SRP302895_co1_475
scientific_name
uncultured Alphaproteobacteria bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach