Metagenome-assembled genome: ERP107066_co1_139
uncultured Steroidobacteraceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2345104,ERR2346693 of study ERP107066.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
ERP107066_co1_139
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
91.01
completeness software
CheckM2;1.0.2;default
contamination score
1.9
environmental medium
aquatic
geographic location (country and/or sea)
Brazil
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
metagenome
project name
Amazon river is an important freshwater basin. Known by its huge biodiversity, this water bodies possesses two marked seasons, flood and dry season. Here samples collected freshwater lakes samples during floods season belonging to Upper Amazon river basin (river course before Manaus city), filtered (< 5 um and > 0.2 um) and sequenced using Nextera XT libraries in a HiSeq 2500 Illumina Platform. These metagenomes reveal a great functional and taxonomic diversity and can lead to a better understanding about seasonal changes in this ecosystem.
sample derived from
SAMEA104641231,SAMEA104641232
sample name
ERP107066_co1_139
scientific_name
uncultured Steroidobacteraceae bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach