Metagenome-assembled genome: SRP301943_co4_11
uncultured Candidatus Saccharibacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13444055,SRR13444056 of study SRP301943.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP301943_co4_11
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
host
collection date
1959
completeness score
91.0
completeness software
CheckM2;1.0.2;default
contamination score
0.12
environmental medium
host
geographic location (country and/or sea)
Vanuatu
geographic location (latitude)
-16.5
geographic location (longitude)
167.416
investigation type
metagenome-assembled genome
isolation_source
fish metagenome
local environmental context
fish biome
metagenomic source
fish metagenome
project name
Raw sequence reads from the light organs of Siphamia fishes containing symbiotic bioluminescent bacteria
sample derived from
SAMN17043391,SAMN17043390
sample name
SRP301943_co4_11
scientific_name
uncultured Candidatus Saccharibacteria bacterium
sequencing method
Illumina NovaSeq 6000,Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach