Metagenome-assembled genome: binchicken_co293_330
Candidatus Woesearchaeota archaeon
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2094175,SRR7080638 of study ERP024470.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co293_330
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
engineered
collection date
not provided
completeness score
82.68
completeness software
CheckM2;1.0.2;default
contamination score
1.4
environmental medium
engineered
geographic location (country and/or sea)
not applicable
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
seawater metagenome
local environmental context
seawater biome
metagenomic source
seawater metagenome
project name
In this study, the antibiotic resistance genes (ARGs) profiles and the microbial community structure of the two typical aquacultures farms were studied by metagenomics approach. Based on the blast results upon structured ARDB, 50 ARGs subtypes belonging to 21 ARGs types were identiﬁed in the two farms.
sample derived from
SAMEA104210112,SAMN08777771
sample name
binchicken_co293_330
scientific_name
Candidatus Woesearchaeota archaeon
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach