Metagenome-assembled genome: SRP287051_co2_107
uncultured Phycisphaeraceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12816583,SRR12822863 of study SRP287208.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP287051_co2_107
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
engineered
collection date
not provided
completeness score
81.32
completeness software
CheckM2;1.0.2;default
contamination score
0.99
environmental medium
engineered
geographic location (country and/or sea)
China
geographic location (latitude)
39.95
geographic location (longitude)
116.3
investigation type
metagenome-assembled genome
isolation_source
biofilter metagenome
local environmental context
biofilter biome
metagenomic source
biofilter metagenome
project name
Metagenomics analysis could provide the possibility to investigate the microbial composition and functional potential. In this study, four samples were collected to study their bacterial community structure and fuctional potentials.
sample derived from
SAMN16427088,SAMN16434400
sample name
SRP287051_co2_107
scientific_name
uncultured Phycisphaeraceae bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach