Metagenome-assembled genome: binchicken_co96_75
uncultured Candidatus Bathyarchaeia archaeon
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6344961,SRR6344962 of study SRP126093.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co96_75
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
aquatic
collection date
2004-08
completeness score
84.29
completeness software
CheckM2;1.0.2;default
contamination score
3.54
environmental medium
aquatic
geographic location (country and/or sea)
Russia
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
hot springs metagenome
local environmental context
hot springs biome
metagenomic source
hot springs metagenome
project name
In this study we focus on two hydrothermal pools, Arkashin Shurf and Zavarzin Spring, in Uzon Caldera, Kamchatka, Russia that were previously characterized using 16S ribosomal RNA sequencing and geochemical analysis undertaken in Burgess et al. 2012 (DOI: 10.1007/s00248-011-9979-4). First we produced metagenomic assembled genomes (MAGs) and then we characterized and compared them between the two pools. Hypotheses: (1) Discussion of MAG's and possible functions novelty? (2) Comparison of Burgess 16S to metagenomes (3) Differences in functions between pools based on geochemistry.
sample derived from
SAMN08105301,SAMN08105287
sample name
binchicken_co96_75
scientific_name
uncultured Candidatus Bathyarchaeia archaeon
sequencing method
Illumina MiSeq
taxonomic identity marker
multi-marker approach