Metagenome-assembled genome: binchicken_co370_59
uncultured Gammaproteobacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11183726,SRR6824180 of study SRP188615.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co370_59
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
host
collection date
not provided
completeness score
97.08
completeness software
CheckM2;1.0.2;default
contamination score
7.42
environmental medium
host
geographic location (country and/or sea)
not applicable
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
pig gut metagenome
local environmental context
pig gut biome
metagenomic source
pig gut metagenome
project name
Study of pig microbiome in response to antibiotic
sample derived from
SAMN11098517,SAMN08628875
sample name
binchicken_co370_59
scientific_name
uncultured Gammaproteobacteria bacterium
sequencing method
Illumina NovaSeq 6000,Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach