Metagenome-assembled genome: binchicken_co387_498
uncultured Candidatus Peribacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5435972,SRR6240745 of study SRP103583.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co387_498
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
aquatic
collection date
2014-08-20
completeness score
96.24
completeness software
CheckM2;1.0.2;default
contamination score
0.18
environmental medium
aquatic
geographic location (country and/or sea)
USA
geographic location (latitude)
38.9383
geographic location (longitude)
-110.1342
investigation type
metagenome-assembled genome
isolation_source
groundwater metagenome
local environmental context
groundwater biome
metagenomic source
groundwater metagenome
project name
Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets: Groundwater sample from aquifer - Crystal Geyser CG08_land_8/20/14_0.20
sample derived from
SAMN06264886,SAMN07960334
sample name
binchicken_co387_498
scientific_name
uncultured Candidatus Peribacteria bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach