Metagenome-assembled genome: SRP061771_co1_10
uncultured Sulfurovum sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2133563,SRR2133565 of study SRP061771.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP061771_co1_10
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT;1.2.9;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2010-08
completeness score
84.23
completeness software
CheckM2;1.0.2;default
contamination score
5.06
environmental medium
aquatic
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
44.6695
geographic location (longitude)
-125.0982
investigation type
metagenome-assembled genome
isolation_source
marine sediment metagenome
local environmental context
marine sediment biome
metagenomic source
marine sediment metagenome
project name
Multiple metagenomes were sequenced from sediments collected from Hydrate Ridge methane seeps. These communities contain organisms performing the anaerobic oxidation of methane (AOM). Our goal was to analyzed the metabolic potential of these organisms and to correlate this genomic information with complementary transcriptomics and proteomics from the same communities #3730 refers to push core (PC) 16 collected during Alvin dive 4635 at Hydrate Ridge South (44° 34.20' N, 125° 8.87' W, 775 m depth) from a site of active methane seepage. #5133 refers to elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive J2-593 from an area of active seepage marked by bubble ebullition and surface expression of white microbial mat (44° 40.17' N, 125° 5.89' W, 600 m depth). #5133 contained 9 cm of sediment. #5579 refer to elevator 3A push core 41, collected at Hydrate Ridge North during Jason II dive J2-593 from an area of active seepage marked by bubble ebullition and surface expression of white microbial mat (44° 40.17' N, 125° 5.89' W, 600 m depth). #5579 contained 12 cm of sediment.
sample derived from
SAMN03857202
sample name
SRP061771_co1_10
scientific_name
uncultured Sulfurovum sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach