Metagenome-assembled genome: binchicken_co185_274
uncultured Candidatus Saccharibacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12313477,SRR12313479 of study SRP273308.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co185_274
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
terrestrial
collection date
2017-06-21
completeness score
89.07
completeness software
CheckM2;1.0.2;default
contamination score
0.1
environmental medium
terrestrial
geographic location (country and/or sea)
Puerto Rico
geographic location (latitude)
18.27
geographic location (longitude)
-65.78
investigation type
metagenome-assembled genome
isolation_source
rock metagenome
local environmental context
rock biome
metagenomic source
rock metagenome
project name
The study investigates the role of chemolithotrophic and heterotrophic bacteria in the weathering of a granitic outcrop in Puerto Rico.
sample derived from
SAMN15518769,SAMN15518767
sample name
binchicken_co185_274
scientific_name
uncultured Candidatus Saccharibacteria bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach