Metagenome-assembled genome: SRR15829601_binner23_Refined_1_cl
Candidatus Gemmiger excrementipullorum
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR15829601 of study SRP336334.
ENA first public
2025-12-05
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR15829601_binner23_Refined_1_cl
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPADES_v3.15.5
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v1.0.0
broad-scale environmental context
poultry
broker name
EBI-EMG
collection date
2020-12
completeness score
100
completeness software
CheckM2_v1.0.1
contamination score
0.01
environmental medium
cecal material
geographic location (country and/or sea)
Belgium
geographic location (latitude)
51.03000000
geographic location (longitude)
3.43000000
investigation type
metagenome-assembled genome
isolation_source
chicken gut metagenome
local environmental context
chicken
metagenomic source
chicken gut metagenome
project name
Cecal microbiome and resistome of broiler chickens receiving a synbiotic supplementation and/or enrofloxacin
sample derived from
SAMN21367339
sample name
SRR15829601_binner23_Refined_1_cl
scientific_name
Candidatus Gemmiger excrementipullorum
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach