Metagenome-assembled genome: binchicken_co354_198
uncultured Oscillospiraceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11880803,SRR11880816 of study SRP265342.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co354_198
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
host
collection date
2011-07
completeness score
95.99
completeness software
CheckM2;1.0.2;default
contamination score
1.26
environmental medium
host
geographic location (country and/or sea)
Central African Republic
geographic location (latitude)
6.6111
geographic location (longitude)
20.9394
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
local environmental context
gut biome
metagenomic source
gut metagenome
project name
Traditional human communities have shown more microbiome similarities with nonhuman primates in comparison to industrialized populations. In this study, we have profiled the fecal metagenomes of BaAka hunter-gatherers and Bantu agriculturalists from Central Africa and compared with the sympatric gorillas across seasons of variable dietary intake to understand this functional convergence.
sample derived from
SAMN15047020,SAMN15047035
sample name
binchicken_co354_198
scientific_name
uncultured Oscillospiraceae bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach