Metagenome-assembled genome: ERP123247_co1_236
uncultured Candidatus Saccharibacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR4405439,ERR4405440 of study ERP123247.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
ERP123247_co1_236
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
2018-07-09
completeness score
94.71
completeness software
CheckM2;1.0.2;default
contamination score
0.54
environmental medium
aquatic
geographic location (country and/or sea)
Switzerland
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
metagenome
project name
The antibiotic resistome is unveiled for two wastewater treatment plants and their receiving river streams in Switzerland. (Ref. Lee et al., 2021. Water Research, 197. 117050 https://doi.org/10.1016/j.watres.2021.117050)
sample derived from
SAMEA7118389,SAMEA7118390
sample name
ERP123247_co1_236
scientific_name
uncultured Candidatus Saccharibacteria bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach