Metagenome-assembled genome: binchicken_co353_277
uncultured Clostridium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12021142,SRR12021149 of study SRP267455.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co353_277
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
host
collection date
not provided
completeness score
80.92
completeness software
CheckM2;1.0.2;default
contamination score
0.6
environmental medium
host
geographic location (country and/or sea)
China
geographic location (latitude)
32.3
geographic location (longitude)
120.1
investigation type
metagenome-assembled genome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
metagenome
project name
we investigate the fluctuations of rumen microbiota taxa and the corresponding gene abundances for carbohydrate metabolism and ARGs distribution during SARA in dairy cattle. This was obtained with a metagenomics analysis using SARA cows induced by high grain diets.
sample derived from
SAMN15235754,SAMN15235748
sample name
binchicken_co353_277
scientific_name
uncultured Clostridium sp.
sequencing method
HiSeq X Ten
taxonomic identity marker
multi-marker approach