Metagenome-assembled genome: binchicken_co71_18
uncultured Hydrogenobacter sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs DRR163687,SRR5468566 of study DRP004690.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co71_18
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
87.23
completeness software
CheckM2;1.0.2;default
contamination score
0.36
environmental medium
aquatic
geographic location (country and/or sea)
not applicable
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
hot springs metagenome
local environmental context
hot springs biome
metagenomic source
hot springs metagenome
project name
Metagenomic sequencing analysis of the 9 hot springs in the Kirishima region in Kyushu's Kagoshima prefecture.
sample derived from
SAMD00155366,SAMN06267031
sample name
binchicken_co71_18
scientific_name
uncultured Hydrogenobacter sp.
sequencing method
Illumina Genome Analyzer IIx,Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach