Metagenome-assembled genome: binchicken_co317_300
uncultured Gammaproteobacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR17055745,SRR5268549 of study SRP348279.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co317_300
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
86.93
completeness software
CheckM2;1.0.2;default
contamination score
0.35
environmental medium
aquatic
geographic location (country and/or sea)
not applicable
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
seawater metagenome
local environmental context
seawater biome
metagenomic source
seawater metagenome
project name
We used genome-centric metagenomics to undertake a meta-epigenomic investigation of the ocean microbiome. These samples were collected as a part of the SHIPPO (SHIpborne Pole-to-Pole Observations) project of the Korea Polar Research Institute (KOPRI).
sample derived from
SAMN23460435,SAMN06267889
sample name
binchicken_co317_300
scientific_name
uncultured Gammaproteobacteria bacterium
sequencing method
Illumina HiSeq 4000,Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach