Metagenome-assembled genome: SRP192515_co1_29
uncultured Gammaproteobacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8893623,SRR8893624 of study SRP192515.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP192515_co1_29
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2017-06-13
completeness score
96.42
completeness software
CheckM2;1.0.2;default
contamination score
2.28
environmental medium
aquatic
geographic location (country and/or sea)
China
geographic location (latitude)
31.8
geographic location (longitude)
118.5
investigation type
metagenome-assembled genome
isolation_source
wastewater metagenome
local environmental context
wastewater biome
metagenomic source
wastewater metagenome
project name
Integrated metagenomic and metatranscriptomic analyses of ultraviolet disinfection effects on antibiotic resistance genes during wastewater treatment
sample derived from
SAMN11412378,SAMN11412375
sample name
SRP192515_co1_29
scientific_name
uncultured Gammaproteobacteria bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach