Metagenome-assembled genome: SRP338948_co1_31
uncultured Gammaproteobacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR16090826,SRR16090827 of study SRP338948.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP338948_co1_31
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT;1.2.9;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
host
collection date
not provided
completeness score
63.54
completeness software
CheckM2;1.0.2;default
contamination score
0.98
environmental medium
host
geographic location (country and/or sea)
Viet Nam
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
sponge metagenome
local environmental context
sponge biome
metagenomic source
sponge metagenome
project name
Vietnamese sponge-associated microorganism metagenome
sample derived from
SAMN21845638,SAMN21845637
sample name
SRP338948_co1_31
scientific_name
uncultured Gammaproteobacteria bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach