Metagenome-assembled genome: SRP215229_co1_207
uncultured Thermoanaerobaculia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9705320,SRR9705321 of study SRP215229.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP215229_co1_207
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
2017
completeness score
88.88
completeness software
CheckM2;1.0.2;default
contamination score
1.74
environmental medium
aquatic
geographic location (country and/or sea)
Atlantic Ocean
geographic location (latitude)
22.75
geographic location (longitude)
-46.083
investigation type
metagenome-assembled genome
isolation_source
seawater metagenome
local environmental context
seawater biome
metagenomic source
seawater metagenome
project name
Mid-ocean ridge flanks are composed of geologically young (1-65 million year old) rock and make up 75% of the ocean floor. Ocean crustal fluid (water circulating through ocean crust) accounts for 1-2% of the total ocean volume, or about 1.35-27 million trillion liters of water. North Pond is an isolated sediment pond on the western flank of the Mid-Atlantic Ridge, underlain by basaltic rock and a cold, oxygenated aquifer that chemically resembles seawater. The microbial populations that inhabit this crustal fluid, however, are distinct from those in the ocean above. This project examines the taxonomy and genetic capability of the microbial communities inhabiting the crustal fluids beneath North Pond.
sample derived from
SAMN12277442,SAMN12277464
sample name
SRP215229_co1_207
scientific_name
uncultured Thermoanaerobaculia bacterium
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach