Metagenome-assembled genome: SRP107338_co1_94
uncultured Verrucomicrobiaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5576004,SRR5576005 of study SRP107338.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP107338_co1_94
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
engineered
collection date
not provided
completeness score
66.03
completeness software
CheckM2;1.0.2;default
contamination score
1.29
environmental medium
engineered
geographic location (country and/or sea)
USA
geographic location (latitude)
42.06
geographic location (longitude)
-87.68
investigation type
metagenome-assembled genome
isolation_source
bioreactor metagenome
local environmental context
bioreactor biome
metagenomic source
bioreactor metagenome
project name
This project focus on a Denitrifying Candidatus Accumulibacter enrichment culture that we've shown to be capable of producing substantial nitrous oxide when nitrite is present as the electron acceptor for denitrification. Shotgun metagenomic sequencing and genome-resolved metagenome analysis were applied to investigate the genomic nitrogen transformation potential for two Accumulibacter genomes as well as flanking bacterial genomes.
sample derived from
SAMN06957055,SAMN06957054
sample name
SRP107338_co1_94
scientific_name
uncultured Verrucomicrobiaceae bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach