Metagenome-assembled genome: SRP093185_co1_102
uncultured Candidatus Saccharibacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5011273,SRR5011275 of study SRP093185.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP093185_co1_102
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
65.63
completeness software
CheckM2;1.0.2;default
contamination score
2.07
environmental medium
aquatic
geographic location (country and/or sea)
South Africa
geographic location (latitude)
-28.232288
geographic location (longitude)
26.79436499
investigation type
metagenome-assembled genome
isolation_source
subsurface metagenome
local environmental context
subsurface biome
metagenomic source
subsurface metagenome
project name
A temporal study of the microbial communities inhabiting subsurface fracture fluids 1,339 m below land surface in Welkom, South Africa (S 28° 14' 24” E 26° 47' 45”). Data contains metagenomic and metatranscriptomic data generated using an Illumina HiSeq 2500 platform.
sample derived from
SAMN04419123,SAMN04419121
sample name
SRP093185_co1_102
scientific_name
uncultured Candidatus Saccharibacteria bacterium
sequencing method
Illumina HiSeq 2500,Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach