Metagenome-assembled genome: SRP287540_co2_325
uncultured Ruminiclostridium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12833141,SRR12833145 of study SRP287540.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP287540_co2_325
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
host
collection date
not provided
completeness score
93.19
completeness software
CheckM2;1.0.2;default
contamination score
3.27
environmental medium
host
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
rat gut metagenome
local environmental context
rat gut biome
metagenomic source
rat gut metagenome
project name
To reveal the taxonomic and functional changes of gut content during intestinal ischemia and reperfusion in rats
sample derived from
SAMN16457405,SAMN16457443
sample name
SRP287540_co2_325
scientific_name
uncultured Ruminiclostridium sp.
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach