Metagenome-assembled genome: binchicken_co215_22
uncultured Synechococcus sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2604108,ERR599318 of study ERP108950.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co215_22
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
63.37
completeness software
CheckM2;1.0.2;default
contamination score
2.18
environmental medium
aquatic
geographic location (country and/or sea)
not applicable
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
seawater metagenome
local environmental context
seawater biome
metagenomic source
seawater metagenome
project name
The dataset includes 40 surface seawater (3m) metagenomics samples collected monthly from January 2012 to February 2015 at the SOLA station in the Bay of Banyuls sur Mer (France) in the northwestern Mediterranean.Samples were prefiltered on 3 μm filters and collected on 0.22 μm filters. Paired-end reads (2x100pb) sequencing was done with an Illumina HiSeq 2500.
sample derived from
SAMEA4699814,SAMEA2620959
sample name
binchicken_co215_22
scientific_name
uncultured Synechococcus sp.
sequencing method
Illumina HiSeq 2500,Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach