Metagenome-assembled genome: SRP124364_co1_304
uncultured bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6262237,SRR6262238 of study SRP124364.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP124364_co1_304
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
aquatic
collection date
2014-10-31
completeness score
95.56
completeness software
CheckM2;1.0.2;default
contamination score
1.12
environmental medium
aquatic
geographic location (country and/or sea)
China
geographic location (latitude)
24.82
geographic location (longitude)
118.16
investigation type
metagenome-assembled genome
isolation_source
freshwater metagenome
local environmental context
freshwater biome
metagenomic source
freshwater metagenome
project name
Metagenome data from freshwater of Xidong Reservoir
sample derived from
SAMN07961457,SAMN07961456
sample name
SRP124364_co1_304
scientific_name
uncultured bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach