Metagenome-assembled genome: SRP199465_co2_368
uncultured Ruminococcus sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9122728,SRR9335148 of study SRP199465.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP199465_co2_368
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
host
collection date
2017
completeness score
60.3
completeness software
CheckM2;1.0.2;default
contamination score
0.08
environmental medium
host
geographic location (country and/or sea)
USA
geographic location (latitude)
30.4449951
geographic location (longitude)
-84.3023827
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
local environmental context
gut biome
metagenomic source
gut metagenome
project name
The first goal is to establish a shotgun metagenome database of Illumina paired-end reads from the prairie vole (Microtus ochrogaster) from multiple individuals housed in the same colony (within-colony gamma diversity). This will be used as the basis for taxonomic assignment of the most abundant strains from individual animals before and after treatment with inoculation strains. Microbiome alteration is one of the phenotypes to be assayed in animals treated with inoculum. The other phenotypes to be assayed are behavior and neurochemical.
sample derived from
SAMN08875415,SAMN11853144
sample name
SRP199465_co2_368
scientific_name
uncultured Ruminococcus sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach