Metagenome-assembled genome: SRP257259_co1_292
uncultured Burkholderiaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11567520,SRR11567528 of study SRP257259.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP257259_co1_292
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
aquatic
collection date
2018-02-01
completeness score
79.65
completeness software
CheckM2;1.0.2;default
contamination score
0.78
environmental medium
aquatic
geographic location (country and/or sea)
Puerto Rico
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
freshwater metagenome
local environmental context
freshwater biome
metagenomic source
freshwater metagenome
project name
Deferentially wastewater-impacted watersheds were sampled on the island of Puerto Rico 6-months after Hurricane Maria to assess the effects of wastewater treatment plant effluents on the proliferation of antibiotic resistance determinants and pathogens. The water column and sediments of 3 different watersheds were sampled, as well as the influent and effluent the Patillas wastewater treatment plant.
sample derived from
SAMN14638999,SAMN14639012
sample name
SRP257259_co1_292
scientific_name
uncultured Burkholderiaceae bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach