Metagenome-assembled genome: binchicken_co50_284
uncultured Caulobacteraceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8464962,SRR8465028 of study SRP180575.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co50_284
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
terrestrial
collection date
2017-08-29
completeness score
83.54
completeness software
CheckM2;1.0.2;default
contamination score
5.4
environmental medium
terrestrial
geographic location (country and/or sea)
USA
geographic location (latitude)
47.6516
geographic location (longitude)
-122.3045
investigation type
metagenome-assembled genome
isolation_source
rhizosphere metagenome
local environmental context
rhizosphere biome
metagenomic source
rhizosphere metagenome
project name
Rhizosphere microbial communities from Carex aquatilis grown in submerged peat from a thermokarst bog, University of Washington, Seatle, WA, United States
sample derived from
SAMN10350570,SAMN10350767
sample name
binchicken_co50_284
scientific_name
uncultured Caulobacteraceae bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach