Metagenome-assembled genome: SRP302447_co1_146
uncultured Candidatus Saccharibacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13723393,SRR13723394 of study SRP302447.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP302447_co1_146
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
terrestrial
collection date
2018-01-31
completeness score
97.57
completeness software
CheckM2;1.0.2;default
contamination score
0.71
environmental medium
terrestrial
geographic location (country and/or sea)
USA
geographic location (latitude)
40.6667
geographic location (longitude)
-77.9027
investigation type
metagenome-assembled genome
isolation_source
rock metagenome
local environmental context
rock biome
metagenomic source
rock metagenome
project name
This study investigates the role of microorganisms in the subsurface weathering of pyrite in shale using in situ and enrichment culture metagenomes and 16S rRNA gene sequencing.
sample derived from
SAMN17384475,SAMN17384474
sample name
SRP302447_co1_146
scientific_name
uncultured Candidatus Saccharibacteria bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach