Metagenome-assembled genome: binchicken_co249_95
uncultured Nitrospiraceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR4244875,SRR5007357 of study SRP089948.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co249_95
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
engineered
collection date
not provided
completeness score
96.34
completeness software
CheckM2;1.0.2;default
contamination score
6.27
environmental medium
engineered
geographic location (country and/or sea)
not applicable
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
activated sludge metagenome
local environmental context
activated sludge biome
metagenomic source
activated sludge metagenome
project name
Raman-based microcolony genomics for studying microevolution and ecology of nitrifiers
sample derived from
SAMN05720150,SAMN05720220
sample name
binchicken_co249_95
scientific_name
uncultured Nitrospiraceae bacterium
sequencing method
NextSeq 500,Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach