Metagenome-assembled genome: binchicken_co175_273
uncultured Flavobacterium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8437820,SRR8942307 of study SRP178833.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co175_273
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
83.74
completeness software
CheckM2;1.0.2;default
contamination score
1.09
environmental medium
aquatic
geographic location (country and/or sea)
not applicable
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
riverine metagenome
local environmental context
riverine biome
metagenomic source
riverine metagenome
project name
Freshwater microbial communities from St. Lawrence River, New York, United States river dissolved organic matter (DOM) added 8d time point
sample derived from
SAMN10351021,SAMN11312053
sample name
binchicken_co175_273
scientific_name
uncultured Flavobacterium sp.
sequencing method
Illumina HiSeq 2500,Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach