Metagenome-assembled genome: binchicken_co399_9
uncultured Cardiobacteriales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5940695,SRR5940699 of study SRP107228.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co399_9
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
host
collection date
not provided
completeness score
89.23
completeness software
CheckM2;1.0.2;default
contamination score
0.66
environmental medium
host
geographic location (country and/or sea)
not applicable
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
insect metagenome
local environmental context
insect biome
metagenomic source
insect metagenome
project name
Blowflies and houseflies (Diptera) are mechanical vectors of pathogens that feed and breed in corpses, waste and decaying organic matter, where they also may acquire a significant part of their microbiome. Individual flies collected in urban, natural, and rural environments were sequenced using whole genome shotgun sequencing. Datasets were filtered to remove the fly host genome.
sample derived from
SAMN07135655,SAMN07135659
sample name
binchicken_co399_9
scientific_name
uncultured Cardiobacteriales bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach