Metagenome-assembled genome: binchicken_co316_153
uncultured Formosa sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3589589,SRR3933337 of study ERP010880.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co316_153
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
76.31
completeness software
CheckM2;1.0.2;default
contamination score
1.37
environmental medium
aquatic
geographic location (country and/or sea)
not applicable
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
seawater metagenome
local environmental context
seawater biome
metagenomic source
seawater metagenome
project name
Analysis of the genes and genomes present in Tara Oceans Polar Circle prokaryote size fractions through shotgun DNA sequencing. Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
sample derived from
SAMEA4397390,SAMN05416740
sample name
binchicken_co316_153
scientific_name
uncultured Formosa sp.
sequencing method
Illumina HiSeq 2500,Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach