Metagenome-assembled genome: SRP069133_co1_77
uncultured Bifidobacterium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR3139705,SRR3139708 of study SRP069133.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP069133_co1_77
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
host
collection date
2013-03-25
completeness score
72.42
completeness software
CheckM2;1.0.2;default
contamination score
1.73
environmental medium
host
geographic location (country and/or sea)
USA
geographic location (latitude)
29.174
geographic location (longitude)
-91.071
investigation type
metagenome-assembled genome
isolation_source
crustacean metagenome
local environmental context
crustacean biome
metagenomic source
crustacean metagenome
project name
This project looks at the microbiome associated with the copepod Eurytemora affinis and compares it to the surrounding water column.
sample derived from
SAMN04421854,SAMN04421853
sample name
SRP069133_co1_77
scientific_name
uncultured Bifidobacterium sp.
sequencing method
Illumina HiSeq 2000,Illumina MiSeq
taxonomic identity marker
multi-marker approach