Metagenome-assembled genome: SRP271791_co2_69
uncultured Candidatus Saccharibacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12217121,SRR12217123 of study SRP271791.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP271791_co2_69
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
engineered
collection date
2018-05
completeness score
90.35
completeness software
CheckM2;1.0.2;default
contamination score
0.01
environmental medium
engineered
geographic location (country and/or sea)
Spain
geographic location (latitude)
37.78
geographic location (longitude)
-6.82
investigation type
metagenome-assembled genome
isolation_source
mine drainage metagenome
local environmental context
mine drainage biome
metagenomic source
mine drainage metagenome
project name
In this Project, started in 2017, we are carrying out a comprehensive study of the complex interactions taking place in aqueous acidic solutions between dissolved metals and microbial cells inhabiting deep anoxic zones. These interactions can lead to biomineral formation and affect to the geochemical behavior of many different trace metals. We are also trying to identify adaptive mechanisms by the acidophiles to cope with extremely high salinity and metal concentrations existing in these habitats, and their possible implications for geomicrobiology and biotechnology (e.g., biomining, bioleaching). The project is funded by the Spanish Ministry of Economy and Competitiveness through its National Program of Research, Development and Innovation. The main methods used are Scanning Transmission Electron Microscopy, Cryo-Electron Microscopy, High-Resolution Transmission Electron Microscopy, Metagenomics, Metatranscriptomic, Electron Energy-Loss Spectroscopy, Scanning Electron Microscopy with Energy Dispersive X-ray Spectroscopy, Bioreactors, Anaerobic Microbiology, Synchrotron X-Ray Diffraction, Biomolecular Analyses.
sample derived from
SAMN15524494,SAMN15524492
sample name
SRP271791_co2_69
scientific_name
uncultured Candidatus Saccharibacteria bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach