Metagenome-assembled genome: binchicken_co202_15
uncultured Dehalococcoidia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12068623,SRR5189788 of study SRP159621.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co202_15
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
aquatic
collection date
2011-11-08
completeness score
63.71
completeness software
CheckM2;1.0.2;default
contamination score
0.79
environmental medium
aquatic
geographic location (country and/or sea)
Atlantic Ocean
geographic location (latitude)
22.8
geographic location (longitude)
-46.05
investigation type
metagenome-assembled genome
isolation_source
marine sediment metagenome
local environmental context
marine sediment biome
metagenomic source
marine sediment metagenome
project name
This project aims to understand the diversity and ecophysiology of microbes especially those involved in the nitrogen cycling in oligotrophic subseafloor sediments, by integrating geochemical measurements and modeling, amplicon sequencing, and quantification of functional genes.
sample derived from
SAMN09979605,SAMN06240273
sample name
binchicken_co202_15
scientific_name
uncultured Dehalococcoidia bacterium
sequencing method
Illumina HiSeq 2500,Illumina HiSeq 1000
taxonomic identity marker
multi-marker approach