Metagenome-assembled genome: binchicken_co385_52
uncultured Weeksellaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2837120,SRR5078291 of study SRP065251.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co385_52
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
terrestrial
collection date
not provided
completeness score
85.02
completeness software
CheckM2;1.0.2;default
contamination score
0.59
environmental medium
terrestrial
geographic location (country and/or sea)
Australia
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
algae metagenome
local environmental context
algae biome
metagenomic source
algae metagenome
project name
Marine eukaryotes live in constant interaction with microorganisms that colonise their surfaces. The mechanisms that can drive the selection of those microbial communities are poorly understood. Metagenomes of microbial communities associated to the surfaces of different macroalgal and seagrass species, rocks and those present in the surrounding seawater were sequenced in order to compare their taxonomic composition and functionality using statistical analyses.
sample derived from
SAMN04215155,SAMN06112251
sample name
binchicken_co385_52
scientific_name
uncultured Weeksellaceae bacterium
sequencing method
Illumina Genome Analyzer IIx,Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach