Metagenome-assembled genome: SRP185410_co1_298
uncultured Alphaproteobacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8556254,SRR8556427 of study SRP185410.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP185410_co1_298
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT;1.2.9;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
terrestrial
collection date
2016-06-09
completeness score
83.35
completeness software
CheckM2;1.0.2;default
contamination score
1.37
environmental medium
terrestrial
geographic location (country and/or sea)
USA
geographic location (latitude)
42.759
geographic location (longitude)
-70.891
investigation type
metagenome-assembled genome
isolation_source
salt marsh metagenome
local environmental context
salt marsh biome
metagenomic source
salt marsh metagenome
project name
Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States
sample derived from
SAMN10864264,SAMN10864095
sample name
SRP185410_co1_298
scientific_name
uncultured Alphaproteobacteria bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach