Metagenome-assembled genome: SRP092796_co6_34
uncultured Flavobacteriaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5002379,SRR9178091 of study SRP092796.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP092796_co6_34
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
89.64
completeness software
CheckM2;1.0.2;default
contamination score
2.71
environmental medium
aquatic
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
22.75
geographic location (longitude)
-158.0
investigation type
metagenome-assembled genome
isolation_source
marine plankton metagenome
local environmental context
marine plankton biome
metagenomic source
marine plankton metagenome
project name
A time-resolved deep metagenomic survey of bacterioplankton from the ocean's surface to a depth of 1,000 m in the North Pacific Subtropical Gyre at Station ALOHA, collected from Hawaii Ocean Time-series (HOT) cruises from August 2010 through November 2017.
sample derived from
SAMN05991696,SAMN11874568
sample name
SRP092796_co6_34
scientific_name
uncultured Flavobacteriaceae bacterium
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach