Metagenome-assembled genome: binchicken_co273_45
uncultured Victivallis sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8476232,SRR8476364 of study SRP181529.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co273_45
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
engineered
collection date
2017-04-17
completeness score
92.26
completeness software
CheckM2;1.0.2;default
contamination score
1.91
environmental medium
engineered
geographic location (country and/or sea)
USA
geographic location (latitude)
44.11
geographic location (longitude)
-88.23
investigation type
metagenome-assembled genome
isolation_source
activated sludge metagenome
local environmental context
activated sludge biome
metagenomic source
activated sludge metagenome
project name
Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States
sample derived from
SAMN10351330,SAMN10350934
sample name
binchicken_co273_45
scientific_name
uncultured Victivallis sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach