Metagenome-assembled genome: binchicken_co162_293
uncultured Occallatibacter sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12736056,SRR13781415 of study SRP285691.
assembly software
metaSPAdes;3.15.4;default
binning software
MetaBAT;2.15;default
organism
uncultured Terracidiphilus sp.
broad-scale environmental context
terrestrial
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
collection date
not provided
sample derived from
SAMN16285460,SAMN17675944
geographic location (longitude)
not provided
taxonomic identity marker
multi-marker approach
binning parameters
coverage and kmer
completeness score
85.86
contamination score
4.02
environmental medium
terrestrial
geographic location (latitude)
not provided
scientific_name
uncultured Terracidiphilus sp.
investigation type
metagenome-assembled genome
local environmental context
soil biome
metagenomic source
soil metagenome
project name
5 peat metagenomes and 5 peat viromes from the Spruce and Peatlands Under Changing Environments (SPRUCE) whole-ecosystem warming experiment and its surrounding bog were analyzed to assess viral diversity, and determine peat viral community compositional patterns after two years of increased temperature treatments.
sequencing method
Illumina NovaSeq 6000
completeness software
CheckM2;1.0.2;default
geographic location (country and/or sea)
USA
isolation_source
soil metagenome