Metagenome-assembled genome: binchicken_co162_440
uncultured Steroidobacteraceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12736056,SRR13781415 of study SRP285691.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co162_440
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
terrestrial
collection date
not provided
completeness score
95.94
completeness software
CheckM2;1.0.2;default
contamination score
2.73
environmental medium
terrestrial
geographic location (country and/or sea)
USA
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
soil metagenome
local environmental context
soil biome
metagenomic source
soil metagenome
project name
5 peat metagenomes and 5 peat viromes from the Spruce and Peatlands Under Changing Environments (SPRUCE) whole-ecosystem warming experiment and its surrounding bog were analyzed to assess viral diversity, and determine peat viral community compositional patterns after two years of increased temperature treatments.
sample derived from
SAMN16285460,SAMN17675944
sample name
binchicken_co162_440
scientific_name
uncultured Steroidobacteraceae bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach