Metagenome-assembled genome: binchicken_co246_359
uncultured Gammaproteobacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11235434,SRR8476370 of study SRP187139.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co246_359
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
100
completeness software
CheckM2;1.0.2;default
contamination score
0.0
environmental medium
aquatic
geographic location (country and/or sea)
not applicable
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
activated sludge metagenome
local environmental context
activated sludge biome
metagenomic source
activated sludge metagenome
project name
ANTIRES investigates the occurrence and expression of antibiotic resistance genes (ARG) and antibiotic resistant microorganisms (ARM) in wastewater using state-of-the-art complementary meta-omics techniques. In order to identify distribution pathways of ARGs through polluted wastewater, samples of municipal wastewater are taken at seasonal intervals. The integration of microbiological and biochemical as well as metagenome, metatranscriptome and metaproteome analyses should provide information about the occurrence of antibiotics, ARMs and actually expressed ARGs. The results of these investigations will be used to establish an antibiotic resistance rapid test. The data and diagnostic tools collected in ANTIRES contribute to a better understanding of the distribution pathways and seasonal dynamics of antibiotic resistance in water bodies and are therefore essential for the development of strategies to contain this process.
sample derived from
SAMN14069892,SAMN10351349
sample name
binchicken_co246_359
scientific_name
uncultured Gammaproteobacteria bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach