Metagenome-assembled genome: binchicken_co188_373
uncultured Planctomycetia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10312492,SRR10312500 of study SRP226188.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co188_373
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
2018-03
completeness score
85.98
completeness software
CheckM2;1.0.2;default
contamination score
2.6
environmental medium
aquatic
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
hydrothermal vent metagenome
local environmental context
hydrothermal vent biome
metagenomic source
hydrothermal vent metagenome
project name
Sequencing and assembly of metagenome-assembled genomes (MAGs) and sequencing of 16S rRNA gene amplicons from deep-sea hydrothermal vents at Brothers Volcano
sample derived from
SAMN12239306,SAMN12239312
sample name
binchicken_co188_373
scientific_name
uncultured Planctomycetia bacterium
sequencing method
Illumina HiSeq 3000
taxonomic identity marker
multi-marker approach