Metagenome-assembled genome: SRP334346_co1_189
uncultured Pirellulaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15635848,SRR15635857 of study SRP334346.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP334346_co1_189
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
engineered
collection date
2020-06
completeness score
90.86
completeness software
CheckM2;1.0.2;default
contamination score
0.84
environmental medium
engineered
geographic location (country and/or sea)
China
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
aquaculture metagenome
local environmental context
aquaculture biome
metagenomic source
aquaculture metagenome
project name
These findings may greatly increase our understanding of the microbiota characteristics of the shrimp biofloc based aquaculture system and the complex interactions among shrimp, ambient microflora, and environmental variables. It provides a reference basis for policy on breeding environment safety and maintaining food safety in the production of Penaeus monodon.
sample derived from
SAMN21013339,SAMN21013338
sample name
SRP334346_co1_189
scientific_name
uncultured Pirellulaceae bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach