Metagenome-assembled genome: binchicken_co17_451
uncultured bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7048218,SRR7048226 of study SRP141376.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co17_451
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
terrestrial
collection date
2012-03
completeness score
97.29
completeness software
CheckM2;1.0.2;default
contamination score
1.74
environmental medium
terrestrial
geographic location (country and/or sea)
Chile
geographic location (latitude)
-21.268583
geographic location (longitude)
-69.617974
investigation type
metagenome-assembled genome
isolation_source
microbial mat metagenome
local environmental context
microbial mat biome
metagenomic source
microbial mat metagenome
project name
Four microbial mats located spatially close (few cm away) in a small shallow pond (LLA9) of the Salar de Llamara (Atacama Desert, Chile) along a strong vertical redox gradient, from oxic down to oxygen-deprived waters
sample derived from
SAMN08688553,SAMN08688548
sample name
binchicken_co17_451
scientific_name
uncultured bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach