Metagenome-assembled genome: binchicken_co118_271
uncultured Bifidobacterium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10035881,SRR10035882 of study SRP219636.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co118_271
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
engineered
collection date
not provided
completeness score
95.07
completeness software
CheckM2;1.0.2;default
contamination score
1.62
environmental medium
engineered
geographic location (country and/or sea)
China
geographic location (latitude)
22.38
geographic location (longitude)
114.05
investigation type
metagenome-assembled genome
isolation_source
activated sludge metagenome
local environmental context
activated sludge biome
metagenomic source
activated sludge metagenome
project name
Biotic interactions are prime parameters affecting the long-term bacterial community assemblage in activated sludge of municipal wastewater treatment plants
sample derived from
SAMN12650276,SAMN12650275
sample name
binchicken_co118_271
scientific_name
uncultured Bifidobacterium sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach