Metagenome-assembled genome: SRP345593_co1_67
uncultured Cocleimonas sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR16916498,SRR16916509 of study SRP345593.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP345593_co1_67
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2018-09-16
completeness score
74.46
completeness software
CheckM2;1.0.2;default
contamination score
0.18
environmental medium
aquatic
geographic location (country and/or sea)
Atlantic Ocean
geographic location (latitude)
30.124051
geographic location (longitude)
-42.119532
investigation type
metagenome-assembled genome
isolation_source
hydrothermal vent metagenome
local environmental context
hydrothermal vent biome
metagenomic source
hydrothermal vent metagenome
project name
Metagenomes, metatranscriptomes, and SAGs of venting fluids sampled from the Lost City hydrothermal field during the 2018 expedition with R/V Atlantis and ROV Jason 2. 16S rRNA amplicon sequences from these samples are associated with BioProject PRJNA672129.
sample derived from
SAMN16557391
sample name
SRP345593_co1_67
scientific_name
uncultured Cocleimonas sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach