Durcu.003
Acetobacter thailandicus
Metagenome assembled genome from Neotropical Drosophila species
ENA first public
2025-10-08
INSDC center name
Computational Biology and Microbial Ecology
INSDC status
public
Submitter Id
Durcu.003
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
megahit;min contig lenght 1000bp
binning parameters
min contig lenght:1000 for the assembler. Default parameters for all binning tools and refining tools.
binning software
CONCOT(1.1.0),MaxBin2(2.2.7),MetaBAT2(2.15),DASTool(1.1.2)
broad-scale environmental context
ENVO_01001371
collection date
2019-01
completeness score
96.5
completeness software
checkm
contamination score
2.04
environmental medium
FOODON_00001069
geographic location (country and/or sea)
Ecuador
geographic location (latitude)
-0.46642
geographic location (longitude)
-78.483312
isolation_source
The flies were kept in a banana culture medium(Rafael & Arcos, 1988) under controlled conditions with a 17 �C temperature and a 12-hour photoperiod. For the extraction of DNA, 5 females and 5 males of each species were used and the DNA was extracted with the method described by Pi�ol et al. 1988 (Pi�ol et al., 1988).
local environmental context
OBI:0000133
metagenomic source
insect metagenome
project name
PRJEB70495
sample derived from
ERS17206777
sample name
Durcu.003
scientific_name
Acetobacter thailandicus
taxonomic identity marker
multi-marker approach