Metagenome-assembled genome: binchicken_co176_261
uncultured Comamonadaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7091317,SRR7091319 of study SRP144257.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co176_261
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
2015-11
completeness score
85.52
completeness software
CheckM2;1.0.2;default
contamination score
1.22
environmental medium
aquatic
geographic location (country and/or sea)
China
geographic location (latitude)
21.68
geographic location (longitude)
110.88
investigation type
metagenome-assembled genome
isolation_source
pond metagenome
local environmental context
pond biome
metagenomic source
pond metagenome
project name
Metagenomic samples from shrimp pond
sample derived from
SAMN09005325
sample name
binchicken_co176_261
scientific_name
uncultured Comamonadaceae bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach