Metagenome-assembled genome: SRP278314_co2_181
uncultured Treponemataceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12489244,SRR12489248 of study SRP278314.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP278314_co2_181
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
engineered
collection date
2019-01
completeness score
88.09
completeness software
CheckM2;1.0.2;default
contamination score
2.52
environmental medium
engineered
geographic location (country and/or sea)
China
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
bioreactor sludge metagenome
local environmental context
bioreactor sludge biome
metagenomic source
bioreactor sludge metagenome
project name
Metagenomic analysis can more truly reflect the microbial composition and interaction in the sample, and study the metabolic pathway and gene function at the molecular level
sample derived from
SAMN15870262,SAMN15870264
sample name
SRP278314_co2_181
scientific_name
uncultured Treponemataceae bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach