Metagenome-assembled genome: SRP065251_co2_79
uncultured Cellvibrionaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2835693,SRR2835694 of study SRP065251.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP065251_co2_79
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
host
collection date
2011-10-31
completeness score
83.32
completeness software
CheckM2;1.0.2;default
contamination score
3.26
environmental medium
host
geographic location (country and/or sea)
Australia
geographic location (latitude)
-34.007158
geographic location (longitude)
151.196613
investigation type
metagenome-assembled genome
isolation_source
plant metagenome
local environmental context
plant biome
metagenomic source
plant metagenome
project name
Marine eukaryotes live in constant interaction with microorganisms that colonise their surfaces. The mechanisms that can drive the selection of those microbial communities are poorly understood. Metagenomes of microbial communities associated to the surfaces of different macroalgal and seagrass species, rocks and those present in the surrounding seawater were sequenced in order to compare their taxonomic composition and functionality using statistical analyses.
sample derived from
SAMN04215154
sample name
SRP065251_co2_79
scientific_name
uncultured Cellvibrionaceae bacterium
sequencing method
Illumina Genome Analyzer IIx
taxonomic identity marker
multi-marker approach