Metagenome-assembled genome: binchicken_co369_127
uncultured Kaistella sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR1725968,ERR2607432,ERR3212003,ERR4678565 of study ERP015409.
assembly software
metaSPAdes;3.15.4;default
binning software
MetaBAT;2.15;default
organism
uncultured Kaistella sp.
broad-scale environmental context
aquatic
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
collection date
not provided
sample derived from
SAMEA4527616,SAMEA4700753,SAMEA5414648,SAMEA7426265
geographic location (longitude)
not provided
taxonomic identity marker
multi-marker approach
binning parameters
coverage and kmer
completeness score
61.51
contamination score
2.0
environmental medium
aquatic
geographic location (latitude)
not provided
scientific_name
uncultured Kaistella sp.
investigation type
metagenome-assembled genome
local environmental context
wastewater biome
metagenomic source
wastewater metagenome
project name
Adequately monitoring of large populations and their environments is essential if we want to monitor pathogens and antimicrobial resistance around the globe. Recent developments in high‐throughput sequencing allow to rapidly identify nucleic acids from various organisms in clinical and environmental samples. Sewage systems are recognized as an important source of human pathogens, especially in crowded settings with poor infrastructure. A point‐prevalence metagenomic analysis is applied to sewage samples collected globally from the main sewage system of major cities prior to treatment plants inlet. The project is a proof‐of‐concept study for applying metagenomic approaches that could initiate a global surveillance of human infectious diseases including antimicrobial resistance from sewage collected in major cities around the world to detect, control, prevent and predict human infectious diseases.
sequencing method
Illumina HiSeq 3000,Illumina HiSeq 3000,NextSeq 500,Illumina NovaSeq 6000
completeness software
CheckM2;1.0.2;default
geographic location (country and/or sea)
not applicable
isolation_source
wastewater metagenome