Metagenome-assembled genome: SRP193066_co2_421
uncultured Methanosarcinales archaeon
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8931233,SRR8931234 of study SRP193066.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP193066_co2_421
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
2015-11-01
completeness score
98.88
completeness software
CheckM2;1.0.2;default
contamination score
0.03
environmental medium
aquatic
geographic location (country and/or sea)
USA
geographic location (latitude)
43.0
geographic location (longitude)
-92.5
investigation type
metagenome-assembled genome
isolation_source
groundwater metagenome
local environmental context
groundwater biome
metagenomic source
groundwater metagenome
project name
Application of swine manure to agricultural land allows recycling of plant nutrients, but excess nitrate, phosphorus and fecal bacteria impact surface and drainage water quality. While agronomic and water quality impacts are well studied, little is known about the impact of swine manure slurry on soil microbial communities. We applied swine manure to intact soil columns collected from plots maintained under chisel plow or no-till with corn and soybean rotation
sample derived from
SAMN11466662,SAMN11466663
sample name
SRP193066_co2_421
scientific_name
uncultured Methanosarcinales archaeon
sequencing method
Illumina HiSeq 1500
taxonomic identity marker
multi-marker approach