Metagenome-assembled genome: SRP136066_co1_36
uncultured Gemmatimonadaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6868922,SRR6868923 of study SRP136066.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP136066_co1_36
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
terrestrial
collection date
2014-10-22
completeness score
70.39
completeness software
CheckM2;1.0.2;default
contamination score
3.62
environmental medium
terrestrial
geographic location (country and/or sea)
USA
geographic location (latitude)
63.905016
geographic location (longitude)
-145.554566
investigation type
metagenome-assembled genome
isolation_source
permafrost metagenome
local environmental context
permafrost biome
metagenomic source
permafrost metagenome
project name
This study is examining soil communities across a Holocene chronosequence to investigate how climate and changing ecosystems across the holocene altered the soil community
sample derived from
SAMN08731982
sample name
SRP136066_co1_36
scientific_name
uncultured Gemmatimonadaceae bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach