Metagenome-assembled genome: binchicken_co122_27
uncultured Armatimonadia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12623519,SRR12623520 of study SRP282044.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co122_27
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2016-07-03
completeness score
74.36
completeness software
CheckM2;1.0.2;default
contamination score
1.25
environmental medium
aquatic
geographic location (country and/or sea)
Atlantic Ocean
geographic location (latitude)
43.010478
geographic location (longitude)
-60.211777
investigation type
metagenome-assembled genome
isolation_source
cold seep metagenome
local environmental context
cold seep biome
metagenomic source
cold seep metagenome
project name
We performed metagenomic sequencing to profile the composition and function of deep sea benthic microbial communities spanning different redox regimes in the Scotian Basin seabed (2.3 km water depth).
sample derived from
SAMN13702310,SAMN13702311
sample name
binchicken_co122_27
scientific_name
uncultured Armatimonadia bacterium
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach