Metagenome-assembled genome: SRP302895_co1_446
uncultured Prosthecobacter sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13608702,SRR13608705 of study SRP302895.
assembly software
metaSPAdes;3.15.4;default
binning software
VAMB;3.0.2;default
organism
uncultured Brevifollis sp.
broad-scale environmental context
aquatic
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
collection date
not provided
sample derived from
SAMN17394051,SAMN17394049
geographic location (longitude)
not provided
taxonomic identity marker
multi-marker approach
binning parameters
coverage and kmer
completeness score
93.12
contamination score
4.93
environmental medium
aquatic
geographic location (latitude)
not provided
scientific_name
uncultured Brevifollis sp.
investigation type
metagenome-assembled genome
local environmental context
metagenome
metagenomic source
metagenome
project name
Antimicrobial resistance (AMR) is a global health issue. The impact of sub-lethal concentrations of antibiotics on antimicrobial resistance gene (ARG) spread in the environment is still unclear. In this study we used semi-realistic flume systems to mimic the riverine environment and we monitored the effect of low concentration of sulfamethoxazole on the microbial community composition and function (i.e. ARG).
sequencing method
Illumina HiSeq 4000
completeness software
CheckM2;1.0.2;default
geographic location (country and/or sea)
United Kingdom
isolation_source
metagenome