Metagenome-assembled genome: SRP222994_co1_39
uncultured Clostridium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10165007,SRR10165008 of study SRP222994.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP222994_co1_39
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
host
collection date
2016-05-02
completeness score
68.02
completeness software
CheckM2;1.0.2;default
contamination score
3.37
environmental medium
host
geographic location (country and/or sea)
Canada
geographic location (latitude)
49.42
geographic location (longitude)
-115.5
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
local environmental context
gut biome
metagenomic source
gut metagenome
project name
To understand the microbial basis for the digestion of the plant cell wall in the North American porcupine, Erethizon dorsatum, a shotgun metagenomics approach has been used to examine the taxonomic composition and metabolic potential of the caecum microbiome.
sample derived from
SAMN12796985
sample name
SRP222994_co1_39
scientific_name
uncultured Clostridium sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach