Metagenome-assembled genome: binchicken_co216_71
uncultured Pirellulales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5468422,SRR5468437 of study SRP104923.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co216_71
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT;1.2.9;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
54.01
completeness software
CheckM2;1.0.2;default
contamination score
0.02
environmental medium
aquatic
geographic location (country and/or sea)
USA
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
freshwater sediment metagenome
local environmental context
freshwater sediment biome
metagenomic source
freshwater sediment metagenome
project name
Metagenome sequencing of total DNA extracted from a series of sediment cores collected at the USGS Cottonwood Lakes prairie pothole lake research site near Jamestown, North Dakota
sample derived from
SAMN06267049,SAMN06264427
sample name
binchicken_co216_71
scientific_name
uncultured Pirellulales bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach