Metagenome-assembled genome: SRP330255_co2_183
uncultured Alistipes sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15283116,SRR15283141 of study SRP330255.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP330255_co2_183
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT;1.2.9;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
host
collection date
2016-08
completeness score
69.58
completeness software
CheckM2;1.0.2;default
contamination score
2.4
environmental medium
host
geographic location (country and/or sea)
China
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
local environmental context
gut biome
metagenomic source
gut metagenome
project name
When choosing suitable techniques for different application scenarios, more detailed metrics are needed to consider, e.g., specificity, sensitivity, repeatability, evenness, depth, etc. Here, we compared 8 metrics of Sequence-independent single-primer amplification and Multiple displacement amplification, as well as two emerged Meta-transcriptomics and Metagenomic , using marmot rectal samples spiked with different concentrations of 5 viruses. Results provide more information about the performance of these methods and help us to understand their suitability for different applications.
sample derived from
SAMN20448104,SAMN20448044
sample name
SRP330255_co2_183
scientific_name
uncultured Alistipes sp.
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach