Metagenome-assembled genome: binchicken_co206_105
uncultured Gammaproteobacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR3330207,SRR3330212 of study SRP072814.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co206_105
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
engineered
collection date
not provided
completeness score
97.24
completeness software
CheckM2;1.0.2;default
contamination score
0.11
environmental medium
engineered
geographic location (country and/or sea)
Singapore
geographic location (latitude)
1.3483
geographic location (longitude)
103.68309999
investigation type
metagenome-assembled genome
isolation_source
bioreactor sludge metagenome
local environmental context
bioreactor sludge biome
metagenomic source
bioreactor sludge metagenome
project name
To reveal the transition of structure and function of microbial community in forwards osmosis anaerobic membrane bioreactors
sample derived from
SAMN04604784,SAMN04604785
sample name
binchicken_co206_105
scientific_name
uncultured Gammaproteobacteria bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach