Metagenome-assembled genome: SRP179991_co3_6
uncultured Gemmatimonadaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8482193,SRR8482194,SRR8482196 of study SRP179991.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP179991_co3_6
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2010
completeness score
76.45
completeness software
CheckM2;1.0.2;default
contamination score
4.0
environmental medium
aquatic
geographic location (country and/or sea)
Arctic Ocean
geographic location (latitude)
73.756333
geographic location (longitude)
8.455167
investigation type
metagenome-assembled genome
isolation_source
marine sediment metagenome
local environmental context
marine sediment biome
metagenomic source
marine sediment metagenome
project name
Metagenome of marine sediment near Loki's castle
sample derived from
SAMN10404973
sample name
SRP179991_co3_6
scientific_name
uncultured Gemmatimonadaceae bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach