Metagenome-assembled genome: binchicken_co395_18
uncultured Rhodospirillales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8652710,SRR8652715 of study SRP187249.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co395_18
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
terrestrial
collection date
2016-09-15
completeness score
64.63
completeness software
CheckM2;1.0.2;default
contamination score
1.13
environmental medium
terrestrial
geographic location (country and/or sea)
Mexico
geographic location (latitude)
19.51
geographic location (longitude)
-98.55
investigation type
metagenome-assembled genome
isolation_source
sediment metagenome
local environmental context
sediment biome
metagenomic source
sediment metagenome
project name
Lake Chalco is one of the last remains left a large lacustrine system by the growth of Mexico City, which was settlement area of significant pre-columbine civilizations, including Aztecs that flourished in this area at the end of the XV century. We describe the prokaryotic and eukaryotic community structure, and gene function analysis of the past 12,000 years, from a sedimentary sequence of Lake Chalco. This study contributed to the understanding of the Holocene period within an area with well characterized environmental conditions of a Neotropical region.
sample derived from
SAMN10939631,SAMN10939625
sample name
binchicken_co395_18
scientific_name
uncultured Rhodospirillales bacterium
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach