Metagenome-assembled genome: SRP296810_co1_392
uncultured Candidatus Saccharibacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13208889,SRR13208906 of study SRP296810.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP296810_co1_392
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
2018-08
completeness score
99.68
completeness software
CheckM2;1.0.2;default
contamination score
0.43
environmental medium
aquatic
geographic location (country and/or sea)
USA
geographic location (latitude)
37.155718
geographic location (longitude)
-80.470294
investigation type
metagenome-assembled genome
isolation_source
wastewater metagenome
local environmental context
wastewater biome
metagenomic source
wastewater metagenome
project name
A year-long study of a small wastewater treatment plant's treatment train in SW Virginia for the purpose of antibiotic resistance monitoring.
sample derived from
SAMN17016682,SAMN17016685
sample name
SRP296810_co1_392
scientific_name
uncultured Candidatus Saccharibacteria bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach