Metagenome-assembled genome: SRP186780_co1_34
uncultured Rickettsiaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8618777,SRR8618778 of study SRP186780.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP186780_co1_34
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
MEGAHIT;1.2.9;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
host
collection date
2014
completeness score
92.7
completeness software
CheckM2;1.0.2;default
contamination score
0.63
environmental medium
host
geographic location (country and/or sea)
USA
geographic location (latitude)
30.03
geographic location (longitude)
-84.39
investigation type
metagenome-assembled genome
isolation_source
invertebrate metagenome
local environmental context
invertebrate biome
metagenomic source
invertebrate metagenome
project name
This project aimed at better understanding the evolutionary history, ecology and life style of Nephromyces, a probably mutualistic apicomplexan.
sample derived from
SAMN10992619
sample name
SRP186780_co1_34
scientific_name
uncultured Rickettsiaceae bacterium
sequencing method
Illumina MiSeq
taxonomic identity marker
multi-marker approach