Metagenome-assembled genome: binchicken_co113_252
uncultured Dehalococcoidales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7760390,SRR7760392 of study SRP158973.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co113_252
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
2014-07-31
completeness score
93.88
completeness software
CheckM2;1.0.2;default
contamination score
2.91
environmental medium
aquatic
geographic location (country and/or sea)
USA
geographic location (latitude)
47.49
geographic location (longitude)
-92.57
investigation type
metagenome-assembled genome
isolation_source
aquatic metagenome
local environmental context
aquatic biome
metagenomic source
aquatic metagenome
project name
In this project, we combined mercury geochemistry, hgcA gene cloning, rRNA methods, and metagenomics to compare microbial communities associated with methylmercury production in two sulfate-impacted lakes on Minnesota's Mesabi Iron Range.
sample derived from
SAMN09925820,SAMN09925814
sample name
binchicken_co113_252
scientific_name
uncultured Dehalococcoidales bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach