Metagenome-assembled genome: SRP249901_co1_105
uncultured Sphingomonadaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11106616,SRR11106617 of study SRP249901.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP249901_co1_105
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
aquatic
collection date
2018-07-28
completeness score
99.09
completeness software
CheckM2;1.0.2;default
contamination score
0.23
environmental medium
aquatic
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
mangrove metagenome
local environmental context
mangrove biome
metagenomic source
mangrove metagenome
project name
Comparative analysis the community structure and diversity of bacteria and archaea in Dongzhai Harbor Mangrove soil and water using 16S rRNA gene sequencing and shotgun metagenomics sequencing
sample derived from
SAMN14114377,SAMN14114376
sample name
SRP249901_co1_105
scientific_name
uncultured Sphingomonadaceae bacterium
sequencing method
HiSeq X Ten
taxonomic identity marker
multi-marker approach