Metagenome-assembled genome: SRP319275_co1_165
uncultured Chitinophaga sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14492168,SRR14492169 of study SRP319275.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP319275_co1_165
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2018-07-28
completeness score
99.07
completeness software
CheckM2;1.0.2;default
contamination score
3.6
environmental medium
aquatic
geographic location (country and/or sea)
China
geographic location (latitude)
43.36
geographic location (longitude)
88.31
investigation type
metagenome-assembled genome
isolation_source
aquatic metagenome
local environmental context
aquatic biome
metagenomic source
aquatic metagenome
project name
metagenomic sequencing data of water, sediment and soil samples from different salt lakes in China. If you have any questions about access to the private data or seeking for permission to your publication then the submitter is the person to contact to.
sample derived from
SAMN19073004,SAMN19073003
sample name
SRP319275_co1_165
scientific_name
uncultured Chitinophaga sp.
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach