Metagenome-assembled genome: SRP144767_co2_38
uncultured Rhizobiaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7153373,SRR7153381 of study SRP144767.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP144767_co2_38
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
host
collection date
not provided
completeness score
56.93
completeness software
CheckM2;1.0.2;default
contamination score
1.38
environmental medium
host
geographic location (country and/or sea)
Arctic Ocean
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
sponge metagenome
local environmental context
sponge biome
metagenomic source
sponge metagenome
project name
This dataset was collected during expedition PS101 of research vessel POLARSTERN to the Arctic Ocean in 2016. It includes amplicon raw sequence reads (V3V4 region 16S rRNA gene survey), metagenomes and metatranscriptomes of deep-sea sponge-associated and seawater microbes.
sample derived from
SAMN09064953,SAMN09064976
sample name
SRP144767_co2_38
scientific_name
uncultured Rhizobiaceae bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach