Metagenome-assembled genome: ERP107106_co1_167
uncultured Paludibacter sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR3345669,ERR3345690 of study ERP107106.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
ERP107106_co1_167
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
host
collection date
not provided
completeness score
84.54
completeness software
CheckM2;1.0.2;default
contamination score
0.01
environmental medium
host
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
local environmental context
gut biome
metagenomic source
gut metagenome
project name
In collaboration with University of Ghana, Accra, Ghana and Makerere University, Kampala, Uganda, we have collected samples from community and privately used pit latrines. In parallel we have also collected samples from volunteers who use those pit latrines routinely to assess the following: if pit latrines offer such environment that will minimise pathogens if we see any clear correlation between pathogens identified in pit latrine and people using it if different depths of pit latrines offer different environment, resulting in different mocrobial composition For the first time this project will give us an idea on the gut microbial composition of a Ghanain and a Ugandan national. We will compare this to the gut microbiota information publically available from caucasian and Indian population. In addition, our project will also generate scientific data to advise the local public health agencies on the appropriate depth a pit latrine should have. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/
sample derived from
SAMEA104717255,SAMEA104717257
sample name
ERP107106_co1_167
scientific_name
uncultured Paludibacter sp.
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach