Metagenome-assembled genome: binchicken_co233_34
uncultured Candidatus Saccharibacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5716309,SRR5716310 of study SRP109823.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co233_34
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
aquatic
collection date
2002
completeness score
78.15
completeness software
CheckM2;1.0.2;default
contamination score
4.19
environmental medium
aquatic
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
44.586
geographic location (longitude)
-125.12
investigation type
metagenome-assembled genome
isolation_source
subsurface metagenome
local environmental context
subsurface biome
metagenomic source
subsurface metagenome
project name
Methane is a critical component of the deep subsurface. In shallow marine sediments, anaerobic oxidation of methane (AOM) is coupled to sulfate reduction. However, relatively little is known about which microbial metabolisms are active in deeply buried sediment containing methane hydrates, particularly with regard to alternative electron acceptors that could fuel deep AOM. We propose to determine which microbial population(s) and functional genes are active in the deep biosphere beneath Hydrate Ridge offshore Oregon by sequencing metagenomes and 16S amplicons from samples drilled on ODP Leg 204 and archived for future molecular analysis. We will analyze gene diversity and expression in six geochemically distinct zones from 2 to 139 meters below the seafloor with the goal of evaluating the relationship between geochemical conditions (i.e. sulfate, iron and manganese availability) and microbial metabolic activity.
sample derived from
SAMN07256346
sample name
binchicken_co233_34
scientific_name
uncultured Candidatus Saccharibacteria bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach