Metagenome-assembled genome: SRP135972_co2_294
uncultured Thiotrichales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6869054,SRR6869055 of study SRP135972.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP135972_co2_294
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
engineered
collection date
not provided
completeness score
81.8
completeness software
CheckM2;1.0.2;default
contamination score
4.17
environmental medium
engineered
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
biofilm metagenome
local environmental context
biofilm biome
metagenomic source
biofilm metagenome
project name
Microbes play important roles in biogeochemical cycling in the marine environment. Recent investigations through big data analyses have assess the global ocean microbial diversity. Planktonic microbes can adhere to surface to form structured communities called biofilms, yet whose specificity compared with the seed water communities have not been systematically evaluated.
sample derived from
SAMN08714533
sample name
SRP135972_co2_294
scientific_name
uncultured Thiotrichales bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach