Metagenome-assembled genome: SRP329387_co2_53
uncultured Gammaproteobacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15213103,SRR15213105 of study SRP329387.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP329387_co2_53
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2018
completeness score
70.54
completeness software
CheckM2;1.0.2;default
contamination score
0.51
environmental medium
aquatic
geographic location (country and/or sea)
China
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
estuary metagenome
local environmental context
estuary biome
metagenomic source
estuary metagenome
project name
Marine group II euryarchaea (MGII) dominates the planktonic archaeal community in global surface seawater and is associated to particulate organic matters which mainly consist of polysaccharides. However, the polysaccharides metabolism of MGII euryarchaea is unclear. In this study, the distribution and potential for polysaccharides metabolism of MGII euryarchaea in estuarine area were investigated.
sample derived from
SAMN20309215,SAMN20309213
sample name
SRP329387_co2_53
scientific_name
uncultured Gammaproteobacteria bacterium
sequencing method
HiSeq X Ten
taxonomic identity marker
multi-marker approach