Metagenome-assembled genome: binchicken_co356_145
Candidatus Micrarchaeota archaeon
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2090168,SRR3989311 of study SRP060520.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co356_145
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
72.33
completeness software
CheckM2;1.0.2;default
contamination score
0.04
environmental medium
aquatic
geographic location (country and/or sea)
USA
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
groundwater metagenome
local environmental context
groundwater biome
metagenomic source
groundwater metagenome
project name
Subsurface processes impact the composition and functioning of the biosphere and atmosphere over both short and geological timescales. Below the soil zone, the microorganisms that mediate transformations of nutrients, trace gases and contaminants are particularly poorly understood. Here, we analyzed 2,542 high-quality draft and complete bacterial and archaeal genomes newly reconstructed from terabases of sequence data collected from sediment and groundwater. This unprecedented scale of genome sampling from a single site represents ~28% of the organisms detected. Analysis of the genome dataset revealed that multiple organisms, including some from ~34 newly detected phyla, are often required to complete redox pathways. Thus, we infer that a complex network of metabolic handoffs extensively cross-links subsurface biogeochemical cycles.
sample derived from
SAMN03842446,SAMN05421977
sample name
binchicken_co356_145
scientific_name
Candidatus Micrarchaeota archaeon
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach