Metagenome-assembled genome: binchicken_co40_24
uncultured Verrucomicrobiota bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR1578618,SRR7473445 of study ERP016812.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co40_24
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
CONCOCT;1.1.0;default
broad-scale environmental context
terrestrial
collection date
not provided
completeness score
96.45
completeness software
CheckM2;1.0.2;default
contamination score
0.11
environmental medium
terrestrial
geographic location (country and/or sea)
India
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
soil metagenome
local environmental context
soil biome
metagenomic source
soil metagenome
project name
Soil consist of wide range of microbes that can be applied for various processes. This study aims to do meta-genomics analysis of the given soil sample.
sample derived from
SAMEA4378227,SAMN09580621
sample name
binchicken_co40_24
scientific_name
uncultured Verrucomicrobiota bacterium
sequencing method
Illumina HiSeq 1000
taxonomic identity marker
multi-marker approach