Metagenome-assembled genome: binchicken_co48_587
uncultured Dehalococcoidia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11826814,SRR5506693 of study SRP262660.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co48_587
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
86.95
completeness software
CheckM2;1.0.2;default
contamination score
2.25
environmental medium
aquatic
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
seawater metagenome
local environmental context
seawater biome
metagenomic source
seawater metagenome
project name
Seawater microbial communities from eastern tropical North Pacific Ocean
sample derived from
SAMN14515069,SAMN06344165
sample name
binchicken_co48_587
scientific_name
uncultured Dehalococcoidia bacterium
sequencing method
Illumina NovaSeq 6000,Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach