Metagenome-assembled genome: binchicken_co405_69
uncultured Halochromatium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2187629,SRR7428114,SRR7428117,SRR7428126,SRR8186049 of study SRP062869.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co405_69
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
91.2
completeness software
CheckM2;1.0.2;default
contamination score
2.55
environmental medium
aquatic
geographic location (country and/or sea)
not applicable
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
marine sediment metagenome
local environmental context
marine sediment biome
metagenomic source
marine sediment metagenome
project name
Methanogenic consortium capable of long-chain</p><p>paraffin degradation (SDB culture) enriched</p><p>from contaminated sediments of San Diego Bay,</p><p>California Degrades n-alkanes C25-C50
sample derived from
SAMN04001714,SAMN04044562,SAMN04044562,SAMN04044567,SAMN10416050
sample name
binchicken_co405_69
scientific_name
uncultured Halochromatium sp.
sequencing method
Illumina MiSeq,Illumina HiSeq 2500,Illumina HiSeq 2500,Illumina HiSeq 2500,Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach