Metagenome-assembled genome: SRP344714_co1_10
uncultured Hyphomicrobiales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR16797977,SRR16797981 of study SRP344714.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP344714_co1_10
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
terrestrial
collection date
2016
completeness score
92.71
completeness software
CheckM2;1.0.2;default
contamination score
2.87
environmental medium
terrestrial
geographic location (country and/or sea)
Spain
geographic location (latitude)
43.03
geographic location (longitude)
-8.08
investigation type
metagenome-assembled genome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
metagenome
project name
Study using metataxonomic approaches to characterize both bacterial and fungal diversity as well as shotgun metagenomic sequencing for broad characterization of the vermicomposting microbiome
sample derived from
SAMN22876306,SAMN22876302
sample name
SRP344714_co1_10
scientific_name
uncultured Hyphomicrobiales bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach