Metagenome-assembled genome: SRP304446_co1_112
uncultured Pseudobdellovibrionaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13617028,SRR13617032 of study SRP304446.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP304446_co1_112
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
engineered
collection date
2020-11-13
completeness score
97.42
completeness software
CheckM2;1.0.2;default
contamination score
0.18
environmental medium
engineered
geographic location (country and/or sea)
China
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
sludge metagenome
local environmental context
sludge biome
metagenomic source
sludge metagenome
project name
The data provided in this study demonstrate the changes in microbial communities and help identify the dominant microflora and genes that play key roles in treating odorous gases.
sample derived from
SAMN17766451,SAMN17766447
sample name
SRP304446_co1_112
scientific_name
uncultured Pseudobdellovibrionaceae bacterium
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach