Metagenome-assembled genome: binchicken_co100_451
uncultured Thermoplasmatales archaeon
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9705735,SRR9707989 of study SRP215242.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co100_451
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
terrestrial
collection date
2016-06-09
completeness score
94.67
completeness software
CheckM2;1.0.2;default
contamination score
0.61
environmental medium
terrestrial
geographic location (country and/or sea)
USA
geographic location (latitude)
42.722
geographic location (longitude)
-70.847
investigation type
metagenome-assembled genome
isolation_source
salt marsh metagenome
local environmental context
salt marsh biome
metagenomic source
salt marsh metagenome
project name
Salt marsh sediment microbial communities from the Plum Island Ecosystem Long term ecological research (LTER), Massachusetts, United States
sample derived from
SAMN11532423,SAMN11530476
sample name
binchicken_co100_451
scientific_name
uncultured Thermoplasmatales archaeon
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach