Metagenome-assembled genome: SRP342821_co1_40
uncultured Pseudobdellovibrionaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR16548379,SRR16548382 of study SRP342821.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP342821_co1_40
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2020-10-28
completeness score
99.56
completeness software
CheckM2;1.0.2;default
contamination score
1.56
environmental medium
aquatic
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
aquatic metagenome
local environmental context
aquatic biome
metagenomic source
aquatic metagenome
project name
the phytoplankton-bacterial relationships during a bloom
sample derived from
SAMN22502096,SAMN22502094
sample name
SRP342821_co1_40
scientific_name
uncultured Pseudobdellovibrionaceae bacterium
sequencing method
Illumina HiSeq 1500
taxonomic identity marker
multi-marker approach