Metagenome-assembled genome: binchicken_co44_182
uncultured Desulfuromonadaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR4539292,ERR4549758 of study ERP123608.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co44_182
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
Rosella;0.4.2;default
broad-scale environmental context
engineered
collection date
not provided
completeness score
99.88
completeness software
CheckM2;1.0.2;default
contamination score
0.13
environmental medium
engineered
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
metagenome
project name
This study propose to elucidate community dynamic of previously observed growing granules in anaerobic digester. Communities of varied size granules are explored by the use of WGS as well as nanopore sequencing.
sample derived from
SAMEA7233260,SAMEA7233243
sample name
binchicken_co44_182
scientific_name
uncultured Desulfuromonadaceae bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach