Metagenome-assembled genome: SRP011637_co1_128
uncultured Coxiellaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR446575,SRR446576 of study SRP011637.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP011637_co1_128
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
97.44
completeness software
CheckM2;1.0.2;default
contamination score
1.3
environmental medium
aquatic
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
aquifer metagenome
local environmental context
aquifer biome
metagenomic source
aquifer metagenome
project name
The objective of the research at the Rifle site is to gain a comprehensive and mechanistic understanding of the microbial factors and associated geochemistry controlling uranium mobility at the field scale so that DOE can confidently remediate uranium plumes as well as support stewardship of uranium-contaminated sites. <p> Collected from a contaminated aquifer bioremediation site.
sample derived from
SAMN00829159,SAMN00829160
sample name
SRP011637_co1_128
scientific_name
uncultured Coxiellaceae bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach