Metagenome-assembled genome: SRP319275_co4_255
uncultured Gammaproteobacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14492172,SRR14492173 of study SRP319275.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP319275_co4_255
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
terrestrial
collection date
2018-07-28
completeness score
84.9
completeness software
CheckM2;1.0.2;default
contamination score
0.16
environmental medium
terrestrial
geographic location (country and/or sea)
China
geographic location (latitude)
42.87
geographic location (longitude)
89.05
investigation type
metagenome-assembled genome
isolation_source
sediment metagenome
local environmental context
sediment biome
metagenomic source
sediment metagenome
project name
metagenomic sequencing data of water, sediment and soil samples from different salt lakes in China. If you have any questions about access to the private data or seeking for permission to your publication then the submitter is the person to contact to.
sample derived from
SAMN19073000,SAMN19072999
sample name
SRP319275_co4_255
scientific_name
uncultured Gammaproteobacteria bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach