Metagenome-assembled genome: SRP302447_co1_783
uncultured Nitrospiraceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13723393,SRR13723394 of study SRP302447.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP302447_co1_783
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
terrestrial
collection date
2018-01-31
completeness score
87.87
completeness software
CheckM2;1.0.2;default
contamination score
0.05
environmental medium
terrestrial
geographic location (country and/or sea)
USA
geographic location (latitude)
40.6667
geographic location (longitude)
-77.9027
investigation type
metagenome-assembled genome
isolation_source
rock metagenome
local environmental context
rock biome
metagenomic source
rock metagenome
project name
This study investigates the role of microorganisms in the subsurface weathering of pyrite in shale using in situ and enrichment culture metagenomes and 16S rRNA gene sequencing.
sample derived from
SAMN17384475,SAMN17384474
sample name
SRP302447_co1_783
scientific_name
uncultured Nitrospiraceae bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach