Metagenome-assembled genome: ERP107533_co1_18
uncultured Spirochaetaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2437276,ERR2437277 of study ERP107533.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
ERP107533_co1_18
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
terrestrial
collection date
2012-12-05
completeness score
78.66
completeness software
CheckM2;1.0.2;default
contamination score
1.84
environmental medium
terrestrial
geographic location (country and/or sea)
Chile
geographic location (latitude)
-23.138472
geographic location (longitude)
-68.247194
investigation type
metagenome-assembled genome
isolation_source
microbial mat metagenome
local environmental context
microbial mat biome
metagenomic source
microbial mat metagenome
project name
Atacama region in Chile is one of the most arid locations in the world. Extreme conditions in the area include: high UV irradiation, hypersalinity, drastic temperature changes, and desiccation. Hypersaline lakes can be found in this environment, and therein, bacterial communities thrive in microbial mats and other structures. WGS metagenomics allows to analyze the genes in the environment and infer functional and taxonomic diversity, and also their influence in the biogeochemical setting. In the datasets from this project, two microbial mats from lakes Brava and Tebenquiche, in Atacama region in Chile, were analyzed.
sample derived from
SAMEA81454168
sample name
ERP107533_co1_18
scientific_name
uncultured Spirochaetaceae bacterium
sequencing method
Illumina HiSeq 1500
taxonomic identity marker
multi-marker approach