Metagenome-assembled genome: SRP321284_co1_83
uncultured Acidimicrobiaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14640484,SRR14640486 of study SRP321284.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP321284_co1_83
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
terrestrial
collection date
2020-01-10
completeness score
87.23
completeness software
CheckM2;1.0.2;default
contamination score
2.8
environmental medium
terrestrial
geographic location (country and/or sea)
India
geographic location (latitude)
21.9497
geographic location (longitude)
89.1833
investigation type
metagenome-assembled genome
isolation_source
sediment metagenome
local environmental context
sediment biome
metagenomic source
sediment metagenome
project name
GHGs emitted from mangrove sediments or rice rhizospheric soil through different microbial processes like methanogenesis, nitrification, denitrification etc. So the microbial diversity of different groups were directly correlated with the GHGs emission.
sample derived from
SAMN19328051,SAMN19328049
sample name
SRP321284_co1_83
scientific_name
uncultured Acidimicrobiaceae bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach