Metagenome-assembled genome: SRP141132_co4_8
uncultured Clostridium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7039256,SRR7039257,SRR7039263 of study SRP141132.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP141132_co4_8
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
host
collection date
not provided
completeness score
92.46
completeness software
CheckM2;1.0.2;default
contamination score
3.97
environmental medium
host
geographic location (country and/or sea)
Norway
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
local environmental context
gut biome
metagenomic source
gut metagenome
project name
To characterize the microbiome in the ceca of wild and captive ptarmigans. The goal is to better understand the physiology of the microbial community in the ceca of these birds to obtain a broader understanding of their digestive physiologies. Samples were collected from the ceca of wild and captive ptarmigans to check for differences between their respective microbiota, and see how living conditions may affect the microbial communities.
sample derived from
SAMN08954405,SAMN08954403,SAMN08954395
sample name
SRP141132_co4_8
scientific_name
uncultured Clostridium sp.
sequencing method
Illumina HiSeq 3000
taxonomic identity marker
multi-marker approach