Metagenome-assembled genome: SRP324684_co1_21
uncultured Erysipelotrichaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15291763,SRR15291766 of study SRP324684.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP324684_co1_21
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
host
collection date
2020-11-02
completeness score
97.02
completeness software
CheckM2;1.0.2;default
contamination score
0.09
environmental medium
host
geographic location (country and/or sea)
Malaysia
geographic location (latitude)
5.3398
geographic location (longitude)
100.2818
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
local environmental context
gut biome
metagenomic source
gut metagenome
project name
Microbiota inhabiting the animal digestive systems contribute to the host metabolic capacity. To date, information on crustacean gut microbiota function is scarce. 16S rRNA amplicon and shotgun metagenomic sequencing were performed to study the taxonomy and function of orange mud crab gut microbiota.
sample derived from
SAMN19689471,SAMN19689470
sample name
SRP324684_co1_21
scientific_name
uncultured Erysipelotrichaceae bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach