Metagenome-assembled genome: SRP144015_co1_57
uncultured Leptospiraceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7082966,SRR7082976 of study SRP144015.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP144015_co1_57
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
engineered
collection date
2016-07-26
completeness score
93.29
completeness software
CheckM2;1.0.2;default
contamination score
2.94
environmental medium
engineered
geographic location (country and/or sea)
Italy
geographic location (latitude)
45.386549
geographic location (longitude)
11.91084
investigation type
metagenome-assembled genome
isolation_source
bioreactor metagenome
local environmental context
bioreactor biome
metagenomic source
bioreactor metagenome
project name
In the present research, six landfill simulation reactors (Ca, Cb, Ia, Ib, Aa, Ab) were filled with municipal solid waste and managed in order to compare an intermittent solution for the aeration of waste with continuous air injection. The experiment was divided in two main phases: landfill simulation (LS) and remediation simulation (RS). The LS phase was made by a pre-aeration, lasted 13 days, and a 53-days long anaerobic period. The RS phase lasted 142 days during which the six columns were managed in three different ways: Ca and Cb were continuously aerated Ia and Ib were intermittently aerated using the same flux Aa and Ab were maintained anaerobic.
sample derived from
SAMN08985419,SAMN08985431
sample name
SRP144015_co1_57
scientific_name
uncultured Leptospiraceae bacterium
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach