Metagenome-assembled genome: binchicken_co219_445
uncultured Lentimicrobiaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR2021503,SRR8542060 of study ERP021493.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co219_445
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT;1.2.9;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
96.31
completeness software
CheckM2;1.0.2;default
contamination score
1.0
environmental medium
aquatic
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
hydrothermal vent metagenome
local environmental context
hydrothermal vent biome
metagenomic source
hydrothermal vent metagenome
project name
This projects explores the functional diversity and activity of rocky subseafloor microbial communities in hydrothermal vent systems. Samples were collected in 2015 from three low temperature diffuse fluid vents at Axial seamount, located in the northeast Pacific Ocean. We also collected a background seawater sample away from the volcano caldera, at 1500m depth as well as within a hydrothermal plume above Anemone vent. Shotgun metagenomics and metatranscriptomics were performed on the three diffuse vent samples as well as the background and plume sample. This study helps to determine the genetic potential and expression patterns of the largely uncharacterized subseafloor microbial community and shows how these patterns change across the complicated biogeochemical gradients of hydrothermal vent systems.
sample derived from
SAMEA101254168,SAMN10864365
sample name
binchicken_co219_445
scientific_name
uncultured Lentimicrobiaceae bacterium
sequencing method
NextSeq 500,Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach