Metagenome-assembled genome: binchicken_co46_507
uncultured Woeseia sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5007139,SRR5211068 of study SRP092902.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co46_507
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
93.11
completeness software
CheckM2;1.0.2;default
contamination score
0.69
environmental medium
aquatic
geographic location (country and/or sea)
not applicable
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
subsurface metagenome
local environmental context
subsurface biome
metagenomic source
subsurface metagenome
project name
In the Mediterranean and other temperate waters, the stratification of the water column is a seasonal phenomenon that usually starts in April and ends in November. In this work, we have analyzed by high throughput metagenomics a fine profile of a stratified water column off the coast of Alicante, at 60 nautical miles, collected in October 2015. The bioproject contains several metagenomes and assembled genomes recovered from the same location but at different depths (15, 30, 45, 60, 75, 90, 1000 and 2000 m).
sample derived from
SAMN05992384,SAMN06267294
sample name
binchicken_co46_507
scientific_name
uncultured Woeseia sp.
sequencing method
Illumina HiSeq 4000,Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach