Metagenome-assembled genome: SRP318679_co1_376
uncultured Bifidobacteriaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14454014,SRR14454018 of study SRP318679.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP318679_co1_376
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
2019-07-09
completeness score
84.43
completeness software
CheckM2;1.0.2;default
contamination score
0.18
environmental medium
aquatic
geographic location (country and/or sea)
China
geographic location (latitude)
40.0
geographic location (longitude)
116.39
investigation type
metagenome-assembled genome
isolation_source
aquatic metagenome
local environmental context
aquatic biome
metagenomic source
aquatic metagenome
project name
metagenome of samples from the Dragon Shaped Water System
sample derived from
SAMN18896317,SAMN18896313
sample name
SRP318679_co1_376
scientific_name
uncultured Bifidobacteriaceae bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach