Metagenome-assembled genome: SRP080215_co1_117
uncultured Syntrophaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR4030042,SRR4030043 of study SRP080215.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP080215_co1_117
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
terrestrial
collection date
2008-01-01
completeness score
92.72
completeness software
CheckM2;1.0.2;default
contamination score
3.12
environmental medium
terrestrial
geographic location (country and/or sea)
USA
geographic location (latitude)
39.55
geographic location (longitude)
-107.97
investigation type
metagenome-assembled genome
isolation_source
soil metagenome
local environmental context
soil biome
metagenomic source
soil metagenome
project name
Soil microbial communities from Rifle, Colorado, USA - 2008 BG 13ft metagenome
sample derived from
SAMN05421554
sample name
SRP080215_co1_117
scientific_name
uncultured Syntrophaceae bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach