Metagenome-assembled genome: SRP104257_co1_407
uncultured Candidatus Saccharibacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5458845,SRR5581654 of study SRP104295.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP104257_co1_407
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
2008-12-01
completeness score
92.73
completeness software
CheckM2;1.0.2;default
contamination score
0.05
environmental medium
aquatic
geographic location (country and/or sea)
Antarctica
geographic location (latitude)
-68.4725
geographic location (longitude)
78.188
investigation type
metagenome-assembled genome
isolation_source
salt lake metagenome
local environmental context
salt lake biome
metagenomic source
salt lake metagenome
project name
Seasonal variation in Antarctic microbial communities: ecology, stability and susceptibility to ecosystem change
sample derived from
SAMN06267216,SAMN06343954
sample name
SRP104257_co1_407
scientific_name
uncultured Candidatus Saccharibacteria bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach