Metagenome-assembled genome: SRP193358_co1_482
uncultured Limnohabitans sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8942237,SRR8942244 of study SRP193358.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP193358_co1_482
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
aquatic
collection date
2016-08-30
completeness score
62.97
completeness software
CheckM2;1.0.2;default
contamination score
0.21
environmental medium
aquatic
geographic location (country and/or sea)
South Korea
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
riverine metagenome
local environmental context
riverine biome
metagenomic source
riverine metagenome
project name
Metagenomic DNA samples were collected from planktonic microbial communities at various sites of Han River. Shotgun sequencing and bacterial 16S amplicon sequencing were conducted.
sample derived from
SAMN11312097,SAMN11312099
sample name
SRP193358_co1_482
scientific_name
uncultured Limnohabitans sp.
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach