Metagenome-assembled genome: binchicken_co54_352
uncultured Occallatibacter sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8464957,SRR8543846 of study SRP180570.
assembly software
metaSPAdes;3.15.4;default
binning software
MetaBAT;2.15;default
organism
uncultured Terracidiphilus sp.
broad-scale environmental context
terrestrial
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
collection date
not provided
sample derived from
SAMN10350572,SAMN10864359
geographic location (longitude)
-122.3045
taxonomic identity marker
multi-marker approach
binning parameters
coverage and kmer
completeness score
93.63
contamination score
1.78
environmental medium
terrestrial
geographic location (latitude)
47.6516
scientific_name
uncultured Terracidiphilus sp.
investigation type
metagenome-assembled genome
local environmental context
rhizosphere biome
metagenomic source
rhizosphere metagenome
project name
Rhizosphere microbial communities from Carex aquatilis grown in submerged peat from a thermokarst bog, University of Washington, Seatle, WA, United States
sequencing method
Illumina NovaSeq 6000
completeness software
CheckM2;1.0.2;default
geographic location (country and/or sea)
USA
isolation_source
rhizosphere metagenome