Metagenome-assembled genome: binchicken_co231_236
uncultured Roseivirgaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5277143,SRR5279028 of study SRP100472.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co231_236
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT;1.2.9;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
aquatic
collection date
2014-03-11
completeness score
98.05
completeness software
CheckM2;1.0.2;default
contamination score
0.67
environmental medium
aquatic
geographic location (country and/or sea)
Atlantic Ocean
geographic location (latitude)
53.9944
geographic location (longitude)
6.8905
investigation type
metagenome-assembled genome
isolation_source
marine metagenome
local environmental context
marine biome
metagenomic source
marine metagenome
project name
Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_11 metagenome
sample derived from
SAMN06267522,SAMN06267523
sample name
binchicken_co231_236
scientific_name
uncultured Roseivirgaceae bacterium
sequencing method
Illumina HiSeq 2000,Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach