Metagenome-assembled genome: SRP128015_co4_81
uncultured Chromatiales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR6439356,SRR6439361 of study SRP128015.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP128015_co4_81
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
97.82
completeness software
CheckM2;1.0.2;default
contamination score
0.03
environmental medium
aquatic
geographic location (country and/or sea)
Indian Ocean
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
hydrothermal vent metagenome
local environmental context
hydrothermal vent biome
metagenomic source
hydrothermal vent metagenome
project name
This study has a special attention to analyze the holistic functional structures and characteristics of microbiota directly associated with deep-sea hydrothermal vents in comparison with that in the global ocean water, using a metagenomic approach. In specific, the applicability of the microbial dispersal hypothesis – 'Ocean Seed Bank' or 'Everything is everywhere' to hydrothermal vent systems are evaluated in a functional aspect.
sample derived from
SAMN08290428,SAMN08290431
sample name
SRP128015_co4_81
scientific_name
uncultured Chromatiales bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach