Metagenome-assembled genome: binchicken_co186_163
uncultured Elusimicrobia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8670877,SRR8670878,SRR8670879 of study SRP187592.
assembly software
metaSPAdes;3.15.4;default
binning software
MetaBAT;2.15;default
organism
uncultured Elusimicrobia bacterium
broad-scale environmental context
aquatic
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
collection date
2016-08-04
sample derived from
SAMN11056687
geographic location (longitude)
-70.71619
taxonomic identity marker
multi-marker approach
binning parameters
coverage and kmer
completeness score
95.27
contamination score
0.42
environmental medium
aquatic
geographic location (latitude)
81.82452
scientific_name
uncultured Elusimicrobia bacterium
investigation type
metagenome-assembled genome
local environmental context
freshwater sediment biome
metagenomic source
freshwater sediment metagenome
project name
The Arctic is currently experiencing climate-change related warming, which rapidly affects the environmental constraints on its microbial communities. Yet, our knowledge of the community structure and function of high Arctic freshwater microbes is still lacking, even though they play key roles in nutrient cycling. Here, using high-throughput sequencing, we show that sediment microbial communities in the High Arcticâ€™s largest lake by volume, Lake Hazen, are highly diverse and contain novel organisms which genomes we could reconstruct.
sequencing method
Illumina HiSeq 2500
completeness software
CheckM2;1.0.2;default
geographic location (country and/or sea)
Canada
isolation_source
freshwater sediment metagenome