Metagenome-assembled genome: binchicken_co123_322
uncultured Nitrososphaerota archaeon
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14000031,SRR14000032 of study SRP310192.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co123_322
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
2015-04-18
completeness score
84.59
completeness software
CheckM2;1.0.2;default
contamination score
1.35
environmental medium
aquatic
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
23.957043
geographic location (longitude)
-108.862273
investigation type
metagenome-assembled genome
isolation_source
hydrothermal vent metagenome
local environmental context
hydrothermal vent biome
metagenomic source
hydrothermal vent metagenome
project name
Auka hydrothermal vent field is located at 3650m depth in Pescadero Basin, at the mouth of the Gulf of California. Auka is a sediment hosted hydrothermal vent field, and shares many characteristics with the more well-studied vents at Guaymas Basin, 400 km to the northeast. Analysis of the sediment microbial community at Auka provides insight in the factors shaping microbial community structure at sediments hosted hydrothermal vents.
sample derived from
SAMN18353079,SAMN18353078
sample name
binchicken_co123_322
scientific_name
uncultured Nitrososphaerota archaeon
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach