Metagenome-assembled genome: SRP182702_co1_242
uncultured Rhodobacterales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8497110,SRR8497111 of study SRP182702.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP182702_co1_242
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT;1.2.9;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
engineered
collection date
2018-01-17/2018-01-26
completeness score
55.15
completeness software
CheckM2;1.0.2;default
contamination score
0.93
environmental medium
engineered
geographic location (country and/or sea)
Hong Kong
geographic location (latitude)
22.34
geographic location (longitude)
114.27
investigation type
metagenome-assembled genome
isolation_source
biofilm metagenome
local environmental context
biofilm biome
metagenomic source
biofilm metagenome
project name
Through the comparison of metagenomes, we aim to highlight the roles of quorum sensing signals play in biofilm community, and explore the different impacts of each molecules.
sample derived from
SAMN10712703
sample name
SRP182702_co1_242
scientific_name
uncultured Rhodobacterales bacterium
sequencing method
HiSeq X Ten
taxonomic identity marker
multi-marker approach