Metagenome-assembled genome: SRP284430_co1_156
uncultured Actinomycetota bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12687281,SRR12687321 of study SRP284430.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP284430_co1_156
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
terrestrial
collection date
2019-06
completeness score
79.67
completeness software
CheckM2;1.0.2;default
contamination score
3.23
environmental medium
terrestrial
geographic location (country and/or sea)
China
geographic location (latitude)
44.38
geographic location (longitude)
83.33
investigation type
metagenome-assembled genome
isolation_source
soil metagenome
local environmental context
soil biome
metagenomic source
soil metagenome
project name
Metagenomic sequencing was performed to analyze the rhizosphere and bulk soils of three halophytic plants in three sample plots
sample derived from
SAMN16205486,SAMN16205487
sample name
SRP284430_co1_156
scientific_name
uncultured Actinomycetota bacterium
sequencing method
Illumina HiSeq 1500
taxonomic identity marker
multi-marker approach