Metagenome-assembled genome: SRR15342096_concoct_28
uncultured Clostridia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR15342096 of study SRP330911.
ENA first public
2025-12-05
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR15342096_concoct_28
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPADES_v3.15.5
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v1.0.0
broad-scale environmental context
poultry
broker name
EBI-EMG
collection date
2020-04-07
completeness score
51.55
completeness software
CheckM2_v1.0.1
contamination score
1.16
environmental medium
cecal material
geographic location (country and/or sea)
USA
geographic location (latitude)
39.71825000
geographic location (longitude)
-85.62471000
investigation type
metagenome-assembled genome
isolation_source
chicken gut metagenome
local environmental context
chicken
metagenomic source
chicken gut metagenome
project name
Microbiome profiling of broilers treated with different antimicrobial growth promoters (AGP) to guide the discovery of AGP alternatives.
sample derived from
SAMN20522182
sample name
SRR15342096_concoct_28
scientific_name
uncultured Clostridia bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach