Metagenome-assembled genome: SRP072547_co1_298
uncultured Rhodobacterales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR3310977,SRR3311162 of study SRP072547.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP072547_co1_298
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
terrestrial
collection date
2012-01
completeness score
84.33
completeness software
CheckM2;1.0.2;default
contamination score
5.31
environmental medium
terrestrial
geographic location (country and/or sea)
Mexico
geographic location (latitude)
19.25
geographic location (longitude)
-97.24
investigation type
metagenome-assembled genome
isolation_source
stromatolite metagenome
local environmental context
stromatolite biome
metagenomic source
stromatolite metagenome
project name
We performed a comparative metagenomic analysis of microbialite samples along a depth gradient to characterise the functional profile of the microbialite-associated microbial communities.
sample derived from
SAMN04565676,SAMN04565677
sample name
SRP072547_co1_298
scientific_name
uncultured Rhodobacterales bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach