Metagenome-assembled genome: SRP090828_co1_115
uncultured Gammaproteobacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR4343426,SRR4343439 of study SRP090828.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP090828_co1_115
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
aquatic
collection date
2012-07-11
completeness score
66.13
completeness software
CheckM2;1.0.2;default
contamination score
0.22
environmental medium
aquatic
geographic location (country and/or sea)
USA
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
groundwater metagenome
local environmental context
groundwater biome
metagenomic source
groundwater metagenome
project name
The purpose of this project was to determine the phylogenetic signature and biosynthetic potential of shallow agriculture-contaminated groundwater in California.
sample derived from
SAMN05861671
sample name
SRP090828_co1_115
scientific_name
uncultured Gammaproteobacteria bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach