Metagenome-assembled genome: SRP063590_co1_44
uncultured Sphingomonadaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7428105,SRR7428122 of study SRP063590.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP063590_co1_44
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
terrestrial
collection date
2012-09
completeness score
96.74
completeness software
CheckM2;1.0.2;default
contamination score
4.05
environmental medium
terrestrial
geographic location (country and/or sea)
France
geographic location (latitude)
43.484946
geographic location (longitude)
5.188452
investigation type
metagenome-assembled genome
isolation_source
microbial mat metagenome
local environmental context
microbial mat biome
metagenomic source
microbial mat metagenome
project name
This project aimed to determine the impact of hydrocarbon contamination on the structure and activity of prokaryotic community in natural microbial mats.
sample derived from
SAMN04044568
sample name
SRP063590_co1_44
scientific_name
uncultured Sphingomonadaceae bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach