Metagenome-assembled genome: binchicken_co186_200
uncultured Caldilineaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8670877,SRR8670878,SRR8670879 of study SRP187592.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co186_200
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT;2.15;default
broad-scale environmental context
aquatic
collection date
2016-08-04
completeness score
95.61
completeness software
CheckM2;1.0.2;default
contamination score
4.03
environmental medium
aquatic
geographic location (country and/or sea)
Canada
geographic location (latitude)
81.82452
geographic location (longitude)
-70.71619
investigation type
metagenome-assembled genome
isolation_source
freshwater sediment metagenome
local environmental context
freshwater sediment biome
metagenomic source
freshwater sediment metagenome
project name
The Arctic is currently experiencing climate-change related warming, which rapidly affects the environmental constraints on its microbial communities. Yet, our knowledge of the community structure and function of high Arctic freshwater microbes is still lacking, even though they play key roles in nutrient cycling. Here, using high-throughput sequencing, we show that sediment microbial communities in the High Arctic's largest lake by volume, Lake Hazen, are highly diverse and contain novel organisms which genomes we could reconstruct.
sample derived from
SAMN11056687
sample name
binchicken_co186_200
scientific_name
uncultured Caldilineaceae bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach