Metagenome-assembled genome: SRP090399_co1_60
uncultured Halobellus sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8816318,SRR8816319 of study SRP090399.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP090399_co1_60
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
80.16
completeness software
CheckM2;1.0.2;default
contamination score
1.32
environmental medium
aquatic
geographic location (country and/or sea)
Puerto Rico
geographic location (latitude)
17.0
geographic location (longitude)
-67.0
investigation type
metagenome-assembled genome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
metagenome
project name
Culture independent study of microbial communities in hypersaline environments in a tropical solar saltern in Cabo Rojo, Puerto Rico. This project aims to determine the diversity present using direct 16S rRNA amplification. A different diversity is expected due to the stable conditions year round which in turn may lead to identification of new species.
sample derived from
SAMN11289319,SAMN11289320
sample name
SRP090399_co1_60
scientific_name
uncultured Halobellus sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach