Metagenome-assembled genome: ERP125879_co1_2
uncultured Flavobacteriales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs ERR5004569,ERR5005182 of study ERP125879.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
ERP125879_co1_2
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
host
collection date
not provided
completeness score
94.45
completeness software
CheckM2;1.0.2;default
contamination score
4.7
environmental medium
host
geographic location (country and/or sea)
Ukraine
geographic location (latitude)
51.212497
geographic location (longitude)
1.0
investigation type
metagenome-assembled genome
isolation_source
gut metagenome
local environmental context
gut biome
metagenomic source
gut metagenome
project name
The Earth Microbiome Project Multi-omics component (EMP500) involves amplicon and shotgun metagenomic sequencing and metabolomic profiling of over five hundred microbial communities from diverse environments on our planet. We developed new protocols for shotgun metagenomic sequencing and assembly, with the goal of applying this workflow to a range of environmental samples, combined with metabolomic profiling. 16S, 18S, and ITS amplicon sequencing was done in addition. We acquired a set of &gt 500 fresh environmental samples across a range of habitats, with the help of the EMP network of collaborators. A biobank of frozen aliquots for all samples is maintained at UCSD (soil samples stored at the Pacific Northwest National Laboratory) for future methods testing and analysis.
sample derived from
SAMEA7723623
sample name
ERP125879_co1_2
scientific_name
uncultured Flavobacteriales bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach