Metagenome-assembled genome: binchicken_co64_51
uncultured Desulfobacterales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5189948,SRR5189949 of study SRP097184.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co64_51
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2009-10
completeness score
84.84
completeness software
CheckM2;1.0.2;default
contamination score
3.82
environmental medium
aquatic
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
18.902
geographic location (longitude)
-155.257
investigation type
metagenome-assembled genome
isolation_source
hydrothermal vent metagenome
local environmental context
hydrothermal vent biome
metagenomic source
hydrothermal vent metagenome
project name
The Zetaproteobacteria are ubiquitous in marine environments, yet this class of Proteobacteria is only represented by a few closely related cultured isolates. In high-iron environments, such as diffuse hydrothermal vents, the Zetaproteobacteria are important members of the community driving its structure. Biogeography of Zetaproteobacteria has shown two ubiquitous operational taxonomic units (OTUs) yet much is unknown about their genomic diversity. This project focused on metagenomic sequencing of Zetaproteobacterial rich microbial communities.
sample derived from
SAMN06226864,SAMN06226863
sample name
binchicken_co64_51
scientific_name
uncultured Desulfobacterales bacterium
sequencing method
Illumina MiSeq
taxonomic identity marker
multi-marker approach