Metagenome-assembled genome: binchicken_co336_8
uncultured Oscillospiraceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11125821,SRR8960096 of study SRP188615.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co336_8
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
host
collection date
not provided
completeness score
83.86
completeness software
CheckM2;1.0.2;default
contamination score
2.2
environmental medium
host
geographic location (country and/or sea)
Australia
geographic location (latitude)
-34.1273
geographic location (longitude)
150.7387
investigation type
metagenome-assembled genome
isolation_source
pig gut metagenome
local environmental context
pig gut biome
metagenomic source
pig gut metagenome
project name
Study of pig microbiome in response to antibiotic
sample derived from
SAMN11098113,SAMN11098481
sample name
binchicken_co336_8
scientific_name
uncultured Oscillospiraceae bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach