Metagenome-assembled genome: SRP219642_co5_8
uncultured Flavobacteriaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10036063,SRR10036064 of study SRP219642.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP219642_co5_8
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2017-08-17
completeness score
91.72
completeness software
CheckM2;1.0.2;default
contamination score
1.66
environmental medium
aquatic
geographic location (country and/or sea)
USA
geographic location (latitude)
38.925804
geographic location (longitude)
-94.697055
investigation type
metagenome-assembled genome
isolation_source
freshwater metagenome
local environmental context
freshwater biome
metagenomic source
freshwater metagenome
project name
Shotgun Illumina HiSeq sequencing of environmental whole genomes (metagenomes) in water samples from an urban watershed
sample derived from
SAMN12647015,SAMN12647014
sample name
SRP219642_co5_8
scientific_name
uncultured Flavobacteriaceae bacterium
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach