Metagenome-assembled genome: SRP178908_co1_8
uncultured Elusimicrobia bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8863434,SRR8863435 of study SRP178908.
assembly software
metaSPAdes;3.15.4;default
binning software
MetaBAT2;2.15;default
organism
uncultured Elusimicrobia bacterium
broad-scale environmental context
aquatic
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
collection date
2014
sample derived from
SAMN11321108,SAMN11321104
geographic location (longitude)
-83.8897
taxonomic identity marker
multi-marker approach
binning parameters
coverage and kmer
completeness score
64.11
contamination score
1.94
environmental medium
aquatic
geographic location (latitude)
39.6974
scientific_name
uncultured Elusimicrobia bacterium
investigation type
metagenome-assembled genome
local environmental context
groundwater biome
metagenomic source
groundwater metagenome
project name
Ohio groundwater metagenomic samples.
sequencing method
Illumina HiSeq 2500
completeness software
CheckM2;1.0.2;default
geographic location (country and/or sea)
USA
isolation_source
groundwater metagenome