Metagenome-assembled genome: binchicken_co84_157
uncultured Bifidobacteriaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12170510,SRR12170511 of study SRP270860.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co84_157
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT;1.2.9;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
terrestrial
collection date
2019-04-04
completeness score
100
completeness software
CheckM2;1.0.2;default
contamination score
5.41
environmental medium
terrestrial
geographic location (country and/or sea)
USA
geographic location (latitude)
29.64
geographic location (longitude)
-82.34
investigation type
metagenome-assembled genome
isolation_source
soil metagenome
local environmental context
soil biome
metagenomic source
soil metagenome
project name
Imperata cylindrica (L.) Beauv. was affected by nutrient and water stress
sample derived from
SAMN15470937,SAMN15470936
sample name
binchicken_co84_157
scientific_name
uncultured Bifidobacteriaceae bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach