Metagenome-assembled genome: SRP257756_co1_214
uncultured Gammaproteobacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11582139,SRR11582140 of study SRP257756.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP257756_co1_214
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
2017-02-15
completeness score
98.73
completeness software
CheckM2;1.0.2;default
contamination score
1.46
environmental medium
aquatic
geographic location (country and/or sea)
Costa Rica
geographic location (latitude)
9.901885
geographic location (longitude)
-85.454327
investigation type
metagenome-assembled genome
isolation_source
subsurface metagenome
local environmental context
subsurface biome
metagenomic source
subsurface metagenome
project name
These are metagenomes from subsurface fluids collected from a >400 km section of the Costa Rica convergent margin spanning the Nicoya Peninsula to the volcanic arc in the Northern and Central volcanic regions.
sample derived from
SAMN14653531,SAMN14653530
sample name
SRP257756_co1_214
scientific_name
uncultured Gammaproteobacteria bacterium
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach