Metagenome-assembled genome: SRP252850_co1_336
uncultured Planctomycetaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR11308338,SRR11308339 of study SRP252850.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP252850_co1_336
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
terrestrial
collection date
not provided
completeness score
96.89
completeness software
CheckM2;1.0.2;default
contamination score
2.62
environmental medium
terrestrial
geographic location (country and/or sea)
Mexico
geographic location (latitude)
26.8283
geographic location (longitude)
-102.024639
investigation type
metagenome-assembled genome
isolation_source
microbial mat metagenome
local environmental context
microbial mat biome
metagenomic source
microbial mat metagenome
project name
Cuatro Cienegas Basin is an endangered oasis with several ponds, rivers and springs within northern Mexico that has been proposed as a relictual site of a marine origin. During late March 2016, an unusual spring rain dissolved the salty crust of a pond we had not noticed before, allowing a microbial mat with a very unusual flexible bubble-containing superficial layer to emerge. These time series metagenome collection will allow various studies on the ecology, diversity and temporal changes within the community of this newly discovered microbial mat.
sample derived from
SAMN14380052,SAMN14380051
sample name
SRP252850_co1_336
scientific_name
uncultured Planctomycetaceae bacterium
sequencing method
Illumina MiSeq
taxonomic identity marker
multi-marker approach