Metagenome-assembled genome: SRP173033_co2_258
uncultured Candidatus Saccharibacteria bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR14932662,SRR14932663 of study SRP173033.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP173033_co2_258
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
engineered
collection date
2014-07-14
completeness score
96.79
completeness software
CheckM2;1.0.2;default
contamination score
0.8
environmental medium
engineered
geographic location (country and/or sea)
China
geographic location (latitude)
18.3986
geographic location (longitude)
109.7451
investigation type
metagenome-assembled genome
isolation_source
activated sludge metagenome
local environmental context
activated sludge biome
metagenomic source
activated sludge metagenome
project name
Global Water Microbiome Consortium (GWMC) conducted a global-scale investigation of microbiome in activated sludge since 2014, to understand biodiversity, biogeography, and underlying mechanisms of microbial communities in wastewater treatment plants (WWTPs) around the world. The activated sludge samples were collected from more than 260 WWTPs in 23 countries on 6 continents in 2014 and 2015.
sample derived from
SAMN19518083,SAMN19518084
sample name
SRP173033_co2_258
scientific_name
uncultured Candidatus Saccharibacteria bacterium
sequencing method
Illumina HiSeq 3000
taxonomic identity marker
multi-marker approach