Metagenome-assembled genome: SRP308112_co1_92
uncultured Kofleriaceae bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR13782123,SRR13782130 of study SRP308112.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP308112_co1_92
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
aquatic
collection date
2013-07-07
completeness score
75.34
completeness software
CheckM2;1.0.2;default
contamination score
2.82
environmental medium
aquatic
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
-13.0
geographic location (longitude)
-82.2
investigation type
metagenome-assembled genome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
metagenome
project name
Oxygen Deficient Zones are areas of the ocean with <10 nM oxygen. Here we sequence a detailed depth profile of the microbial community across the Eastern Tropical South Pacific Oxygen Deficient Zone
sample derived from
SAMN18055980,SAMN18055987
sample name
SRP308112_co1_92
scientific_name
uncultured Kofleriaceae bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach