Metagenome-assembled genome: SRP222552_co1_135
uncultured Bacteroides sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10148553,SRR10148554 of study SRP222552.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP222552_co1_135
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
host
collection date
2015-09-02
completeness score
78.15
completeness software
CheckM2;1.0.2;default
contamination score
0.62
environmental medium
host
geographic location (country and/or sea)
Canada
geographic location (latitude)
49.42
geographic location (longitude)
-112.5
investigation type
metagenome-assembled genome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
metagenome
project name
Shotgun metagenomics was used to examine the composition and metabolic potential of the caecum in the North American beaver, Castor canadensis
sample derived from
SAMN12788353
sample name
SRP222552_co1_135
scientific_name
uncultured Bacteroides sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach