Metagenome-assembled genome: SRR23946412_binner123_Refined_21_cl
Corynebacterium pollutisoli
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR23946412 of study SRP428893.
ENA first public
2025-12-05
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR23946412_binner123_Refined_21_cl
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPADES_v3.15.5
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v1.0.0
broad-scale environmental context
poultry
broker name
EBI-EMG
collection date
2022-07-02
completeness score
56.57
completeness software
CheckM2_v1.0.1
contamination score
0.45
environmental medium
fecal material
geographic location (country and/or sea)
Germany
geographic location (latitude)
49.17000000
geographic location (longitude)
6.53000000
investigation type
metagenome-assembled genome
isolation_source
chicken gut metagenome
local environmental context
chicken
metagenomic source
chicken gut metagenome
project name
Metagenomic sequencing data describing the microbial composition of chicken feces. Chicken were split into three cohorts undergoing various interventions.
sample derived from
SAMN33870117
sample name
SRR23946412_binner123_Refined_21_cl
scientific_name
Corynebacterium pollutisoli
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach