Metagenome-assembled genome: binchicken_co328_152
uncultured Rheinheimera sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR10132665,SRR13076572,SRR13076583 of study SRP125492.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co328_152
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
78.97
completeness software
CheckM2;1.0.2;default
contamination score
0.73
environmental medium
aquatic
geographic location (country and/or sea)
not applicable
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
freshwater metagenome
local environmental context
freshwater biome
metagenomic source
freshwater metagenome
project name
To understand the microbial community composition and function in the natural aquatic ecosystems and the receving river of upgrading wastewater treatment plants
sample derived from
SAMN12773016,SAMN16823271,SAMN16823270
sample name
binchicken_co328_152
scientific_name
uncultured Rheinheimera sp.
sequencing method
HiSeq X Ten,Illumina NovaSeq 6000,Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach