Shotgun metagenome from the Virilla River sediment and water; A038
freshwater metagenome
DOC
2.316
ENA first public
2025-07-31
INSDC center name
UiO
INSDC status
public
NSFQI
49
Submitter Id
A038
altitude
1165
anonymized_name
A038
blaTEM
3.10E-05
broad-scale environmental context
freshwater biome
cf_ef_ratio
1.00E+01
coassembly
water_dry_metag_2
collection date
2022-04-18
collection_timestamp
2022-04-18
color_upt_co
3.00E+01
conductivity_us_cm2
2.03E+02
depth
Not applicable
dfrA12
3.20E-05
ecoli_mpn_100ml
5.40E+04
efaecalis_mpn_100ml
1.60E+04
elevation
1165
environmental medium
water
ermB
4.20E-04
extraction_method
metagenomes
fecal_coliforms_mpn_100ml
1.60E+05
geo_loc_name
Province (Costa Rica):San Jose Province:Tibas Canton
geographic location (country and/or sea)
Costa Rica
geographic location (latitude)
9.969
geographic location (longitude)
-84.05
geographic location (region and locality)
Province (Costa Rica):San Jose Province:Tibas Canton
intI_1
1.23E-06
is_control
FALSE
latitude
9.969
local environmental context
river/lake/stream
longitude
-84.05
molecule
DNA
oxygen_mg_l
8.27E+00
ph
7.85E+00
pooled
No
qnrS
2.00E-05
sample name
A038
sample_name
A038
sample_type
fresh water
scientific_name
freshwater metagenome
season
dry
season_sample_type
dry - fresh water
station_id
Site 2
station_id_sample_type
Site 2 - dry - fresh water
station_id_season
Site 2 - dry
station_id_season_sample_type
Site 2 - dry - fresh water
sul1
4.20E-02
sul2
1.40E-02
taxon_id
449393
temperature_celsius
2.34E+01
tetA
4.10E-04
tetQ
1.80E-02
tube_id
A038
turbidity_unt
8.71E+00