Shotgun metagenome from the Virilla River sediment and water; A042
freshwater metagenome
DOC
2.457
ENA first public
2025-07-31
INSDC center name
UiO
INSDC status
public
NSFQI
35
Submitter Id
A042
altitude
720
anonymized_name
A042
blaTEM
1.50E-05
broad-scale environmental context
freshwater biome
cf_ef_ratio
6.48E+01
coassembly
water_dry_metag_3
collection date
2022-04-18
collection_timestamp
2022-04-18
color_upt_co
7.00E+01
conductivity_us_cm2
3.78E+02
depth
Not applicable
dfrA12
1.10E-05
ecoli_mpn_100ml
3.50E+05
efaecalis_mpn_100ml
5.40E+03
elevation
720
environmental medium
water
ermB
1.40E-05
extraction_method
metagenomes
fecal_coliforms_mpn_100ml
3.50E+05
geo_loc_name
Province (Costa Rica):San Jose Province: Mora Canton
geographic location (country and/or sea)
Costa Rica
geographic location (latitude)
9.946
geographic location (longitude)
-84.22
geographic location (region and locality)
Province (Costa Rica):San Jose Province: Mora Canton
intI_1
1.91E-05
is_control
FALSE
latitude
9.946
local environmental context
river/lake/stream
longitude
-84.22
molecule
DNA
oxygen_mg_l
3.78E+00
ph
7.90E+00
pooled
No
qnrS
2.30E-05
sample name
A042
sample_name
A042
sample_type
fresh water
scientific_name
freshwater metagenome
season
dry
season_sample_type
dry - fresh water
station_id
Site 3
station_id_sample_type
Site 3 - dry - fresh water
station_id_season
Site 3 - dry
station_id_season_sample_type
Site 3 - dry - fresh water
sul1
8.70E-02
sul2
1.60E-02
taxon_id
449393
temperature_celsius
2.80E+01
tetA
2.60E-04
tetQ
2.70E-05
tube_id
A042
turbidity_unt
2.22E+01