18S V4 rRNA, Culturable protist diversity, from sediment collected in December, 2017, at Thau lagoon, and enriched on an E. coli lawn
marine sediment metagenome
INSDC center name
Ifremer
Submitter Id
sam_vibram_12-17-Th-S-E-coli
broad-scale environmental context
mediterranean biome [ENVO:01001833]|aquatic biome [ENVO:00002030]
broker name
SeBiMER
collection date
2017-12-08
common name
marine sediment metagenome
depth
9
elevation
not applicable
environmental medium
mud [ENVO:01000001]
environmental package
Sediment
environmental_sample
Yes
geographic location (country and/or sea)
France
geographic location (latitude)
43.4343
geographic location (longitude)
3.664633
geographic location (region and locality)
Thau lagoon, Bouzigues site
investigation type
metagenome
isolation_source
Surface sediment. First centimeters of sediments with cores taken by scuba divers at 9 meters deep.
local environmental context
lagoon [ENVO:00000038]|aquaculture farm [ENVO:03600074]
project name
vibram
sample name
sam_vibram_12-17-Th-S-E-coli
sample_checklist_description
GSC_MIxS_sediment
sample_description
18S rRNA (v4 loop) of protist metagenome from sediment collected in December of 2017, in Thau lagoon next to oyster tables at the Bouzigues station Ifremer-REPHY, enriched by culturing on bacterial layers (E. coli) on agar plates for 2 weeks
sample_name
12-17-Th-S-E-coli
scientific_name
marine sediment metagenome
target gene
18S rRNA
target subfragment
V4