18S V4 rRNA, Culturable protist diversity, from sediment collected in February, 2018, at Thau lagoon, and enriched on a Vibrio crassostreae J2-9 lawn
marine sediment metagenome
INSDC center name
Ifremer
Submitter Id
sam_vibram_02-18-Th-S-J2-9
broad-scale environmental context
mediterranean biome [ENVO:01001833]|aquatic biome [ENVO:00002030]
broker name
SeBiMER
collection date
2018-02-26
common name
marine sediment metagenome
depth
9
elevation
not applicable
environmental medium
mud [ENVO:01000001]
environmental package
Sediment
environmental_sample
Yes
geographic location (country and/or sea)
France
geographic location (latitude)
43.4343
geographic location (longitude)
3.664633
geographic location (region and locality)
Thau lagoon, Bouzigues site
investigation type
metagenome
isolation_source
Surface sediment. First centimeters of sediments with cores taken by scuba divers at 9 meters deep.
local environmental context
lagoon [ENVO:00000038]|aquaculture farm [ENVO:03600074]
project name
vibram
sample name
sam_vibram_02-18-Th-S-J2-9
sample_checklist_description
GSC_MIxS_sediment
sample_description
18S rRNA (v4 loop) of protist metagenome from sediment collected in February of 2018, in Thau lagoon next to oyster tables at the Bouzigues station Ifremer-REPHY, enriched by culturing on bacterial layers (Vibrio crassostreae J2-9) on agar plates for 2 weeks
sample_name
02-18-Th-S-J2-9
scientific_name
marine sediment metagenome
target gene
18S rRNA
target subfragment
V4