4851cc5b-208b-4e8e-8a9c-5c5b7a25a804-asg-MAGScoT_cleanbin_000007
Methylophagaceae bacterium
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2025-04-15
GAL
University of Rhode Island
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
4851cc5b-208b-4e8e-8a9c-5c5b7a25a804
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Shawn Arellano
collecting institution
Western Washington University
collection date
2021-06-04
completeness score
65.52
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0
depth
2167
environmental medium
adult bivalve tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
32.49
geographic location (longitude)
-76.19
geographic location (region and locality)
Blake Ridge
habitat
Cold seep
host life stage
adult
host scientific name
Bathymodiolus heckerae
host sex
not collected
host taxid
114453
identified_by
Corinna Breusing
identifier_affiliation
University of Rhode Island
investigation type
metagenome-assembled genome
isolation_source
Bivalve: Bathymodiolus heckerae
local environmental context
marine biome
metagenomic source
mollusc metagenome
number of standard tRNAs extracted
27
organism part
WHOLE ORGANISM
project name
ToL
sample derived from
SAMEA118003113
sample name
4851cc5b-208b-4e8e-8a9c-5c5b7a25a804
scientific_name
Methylophagaceae bacterium
sequencing method
Pacbio Sequel II
specimen_id
URI0000073
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
xbBatHeck2.Methylophagaceae_2