eb3fe9f4-ee65-407b-907d-96ae5973afdc-asg-bin.9
Granulicella sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2025-04-15
GAL
The Sainsbury Laboratory
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
eb3fe9f4-ee65-407b-907d-96ae5973afdc
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
THE SAINSBURY LABORATORY
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
terrestrial biome
collected_by
DANIEL STANTON
collecting institution
UNIVERSITY OF MINNESOTA
collection date
2021-06-22
completeness score
99.3
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.86
environmental medium
adult lichen tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
44.48
geographic location (longitude)
-67.59
geographic location (region and locality)
Maine | Great Wass Island
habitat
Coastal forest
host life stage
not applicable
host scientific name
Cystocoleus ebeneus
host sex
not applicable
host taxid
476042
identified_by
DANIEL STANTON | ABIGAIL MEYER
identifier_affiliation
UNIVERSITY OF MINNESOTA
investigation type
metagenome-assembled genome
isolation_source
Lichen: Cystocoleus ebeneus
local environmental context
forest biome
metagenomic source
lichen metagenome
number of standard tRNAs extracted
46
organism part
WHOLE ORGANISM
project name
ASG
proxy voucher
NOT PROVIDED
sample collection device or method
Hand collected
sample derived from
SAMEA118003238
sample name
eb3fe9f4-ee65-407b-907d-96ae5973afdc
scientific_name
Granulicella sp.
sequencing method
Pacbio Sequel II
specimen_id
SL0000005
specimen_voucher
NOT_PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
gdCysEben1.Granulicella_sp_5