RPD_pool_11
Homo sapiens
Protocols: RPE cells were dissociated using trypsin-EDTA (0.25%) in phenol red (Life Technologies, 25200072) for 5 min at 37°C in a 5% CO2 incubator, the plate was tapped to release any non-RPE cells and washed with PBS-/- (Life Technologies, 14190-144). Trypsin-EDTA (0.25%) in phenol red (Life Technologies, 25200072) was added a second time and incubated for 10 min at 37°C in a 5% CO2 incubator. The trypsin was inactivated with RPE medium and cells were then harvested into a 15 mL conical tube, as a single-cell suspension. The cell suspension was centrifuged (5 minutes, 300 g, 4°C), then resuspended in 1 mL of 0.1% BSA-PBS. Cells were counted and assessed for viability with trypan blue, and pooled (eight samples maximum) at a concentration of 1000 live cells/μL (1 × 106 cells/mL). The pooled samples were combined with the master mix containing the reverse transcriptase reaction and added to the first well of the third row of the 10x Genomics Chromium Test Chip. Partition oil was loaded into the first well of the first row, and gel beads were added to the first well in the second row. The remaining wells were filled with 50% glycerol and the bottom row was empty. As the chip runs, an emulsion occurs wherein each oil droplet contains one bead and one single cell termed GEM.  Single cell RNA-sequencing libraries were prepped using the Chromium Single Cell 3' Library & Gel bead Kit for 10X Genomics.
ENA first public
2026-04-10
INSDC center name
Garvan
INSDC status
public
Submitter Id
E-MTAB-16679:RPD_pool_11
broker name
ArrayExpress
cell line
fibroblast derived cell line
cell type
retinal pigment epithelial cell
collection date
not collected
common name
human
developmental stage
adult
disease
mixed age-related macular degeneration with and without RPD
genotype
wild type genotype
geographic location (country and/or sea)
not collected
individual
RPD_pool_11
isolate
not applicable
organism part
skin of body
progenitor cell type
induced pluripotent stem cell
sample name
E-MTAB-16679:RPD_pool_11
scientific_name
Homo sapiens