Metagenome-assembled genome: SRR20550310_binner13_Refined_44
uncultured Collinsella sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR20550310 of study SRP387787.
ENA first public
2025-02-12
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR20550310_binner13_Refined_44
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes_v3.15.5
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v1.0.0
broad-scale environmental context
human
broker name
EBI-EMG
collection date
2015
completeness score
92.59
completeness software
CheckM2_v1.0.1
contamination score
0.22
environmental medium
human gut
geographic location (country and/or sea)
Italy
geographic location (latitude)
missing: third party data
geographic location (longitude)
missing: third party data
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
gut microbiome of adult subjects living in high-polluted areas
sample derived from
SAMN29924308
sample name
SRR20550310_binner13_Refined_44
scientific_name
uncultured Collinsella sp.
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach