ARMS_Gdynia_GDY_20200610_20211222_SF40_DMSO_A
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00785_COI
ampl_size
310
arms_unit_id
GDY1
broad-scale environmental context
marine benthic biome [ENVO_01000024]; marine park area [ENVO:00000362], marine subtidal rocky reef biome [ENVO:01000050]
collection date
2021-12-22
crate_cover
Yes
deployment_date
2020-06-10
depth
4
dna concentration
30.7
environmental medium
blended biomass derived from sessile communities colonising an autonomous reef monitoring structure [ENVO:01001863]
geographic location (country and/or sea)
Poland
geographic location (latitude)
54.48522
geographic location (locality)
Zatoka Pucka
geographic location (longitude)
18.57111
geographic location (ocean)
Baltic Sea
geographic location (region and locality)
Polish part of the Baltic Sea
ha_id
Gdynia Ha
lib_layout
PAIRED
library reads sequenced
991643
local environmental context
rocky reef [ENVO:00000130]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
Gdynia
pcr primers
GGWACWGGWTGAACWGTWTAYCCYCC; TAIACYTCIGGRTGICCRAARAAYCA
pcr_blank_1
CEB_DFD
pcr_blank_2
CEB_DFE
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
2
resequencing
No
samp_fraction
SF
samp_site
Gdynia
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00785_COI
samples_alias_orig
EMOBON00785
sampling_event
Gdynia_GDY_Ha_200610-211222
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240409
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
40
source material identifiers
EMOBON_Gdynia_Ha_4
source_mat_id_an
EMOBON_Gdynia_Ha_4_metabCOI
source_mat_id_orig
ARMS_Gdynia_GDY_20200610_20211222_SF40_DMSO_A
status
sample
target gene
COI
total depth of water column
4