BojaVida_A1_28.07.2021-16.08.2022_M_1mm
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00771_COI
ampl_size
310
arms_unit_id
BojaVida_A1
broad-scale environmental context
marine benthic biome [ENVO_01000024]; marine reef biome [ENVO:01000029]
collection date
2022-08-16
deployment_date
2021-07-28
depth
22
dna concentration
0.22
environmental medium
biomass derived from sieving motile communities present in the retrieval tub of an autonomous reef monitoring structure through a 100 micrometre mesh [ENVO:01001900]
geographic location (country and/or sea)
Slovenia
geographic location (latitude)
45.54875
geographic location (locality)
Gulf of Piran
geographic location (longitude)
13.5507
geographic location (ocean)
Mediterranean Sea
geographic location (region and locality)
Adriatic Sea
ha_id
Piran Ha
lib_layout
PAIRED
library reads sequenced
1491356
local environmental context
sandy sediment [ENVO:01000118]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
Piran
pcr primers
GGWACWGGWTGAACWGTWTAYCCYCC; TAIACYTCIGGRTGICCRAARAAYCA
pcr_blank_1
CEB_DFF
pcr_blank_2
CEB_DFG
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
No
samp_fraction
MF
samp_site
Boja Vida
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00771_COI
samples_alias_orig
EMOBON00771
sampling_event
Piran_BojaVida_Ha_210728_220816
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240313
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
1000
source material identifiers
EMOBON_Piran_Ha_11
source_mat_id_an
EMOBON_Piran_Ha_11_metabCOI
source_mat_id_orig
BojaVida_A1_28.07.2021-16.08.2022_M_1mm
status
sample
target gene
COI
total depth of water column
22