Fecal bacterial microbiota of mus musculus
feces metagenome
host
Mus musculus
isolation_source
feces
collection_date
2017-06-29
geo_loc_name
USA: Corvallis, Oregon
lat_lon
44.565296 N 123.276016 W
samp_mat_process
flash frozen in liquid nitrogen, maintained at -80 C until processing
group
Group 1
week
7
dose
100+PZQ
infection_status
Yes
Mouse_ID
739
Unique_Description
739_gp1_100+PZQ_wk7_yes
Male_Worms
NA
Female_Worms
NA
Total_paired_females
NA
Total_worms
NA
Weight_Necropsy
NA
Date_Necropsy
NA
IFNy
NA
IL10
NA
IL17A
NA
IL1
NA
IL23
NA
IL4
NA
TNFalpha
NA
MB_full
15
MB_moved
0
MBpartial50
15
MB_burried
15
OF_Day
1
OF_Arena
2
OF_Trial_Z1andZ2
5
OF_N_Ent_Z1
17
OF_Lat_T_Z1
0
OF_V_Mean_Z1
5.5
OF_Dist_Z1
1534.8
OF_Dpercentage_Z1
88.3
OF_P_Time_Z1
280.4
OF_PTpercentage_Z1
93.5
OF_N_Ent_Z2
17
OF_Lat_T_Z2
24
OF_V_Mean_Z2
10.4
OF_Dist_Z2
204.3
OF_Dpercentage_Z2
11.7
OF_P_Time_Z2
19.6
OF_PTpercentage_Z2
6.5
OF_N_Ent_TOTAL
34
OF_V_Mean_TOTAL
5.8
OF_Dist_TOTAL
1739.2
OF_P_Time_TOTAL
300
Corr_CD_Place_trial_E1
NA
Corr_CD_Place_trial_E2
NA
Corr_CD_Place_trial_E3
NA
Corr_CD_Place_trial_E4
NA
Corr_CD_Place_trial_E5
NA
Corr_CD_Place_trial_E6
NA
Corr_Avg_Prox_Probe_trials_PR0
NA
Corr_Avg_Prox_Probe_trials_PR1
NA
Corr_Avg_Prox_Probe_trials_PR2
NA
Corr_Avg_Prox_Probe_trials_PR3
NA
Place_Probe_trial_groups
NA
Testing_group_NO
1.5
NO_Arena
2
T4_Obj1
NA
T4_Obj2
NA
T4_TT
NA
T5_Obj1
NA
T5_Obj2
NA
T5_TT
NA
T6_Obj1
NA
T6_Obj2
NA
T6_TT
NA
T4_DO
NA
T5_DO
NA
T6_DO
NA
T4_DI
NA
T5_DI
NA
T6_DI
NA
Comments
Reason for missing worm burden data is that mouse showed sickness behavior and were euthanized early. Classified as being exposed to cercariae, and being infected, even though it had missing worm burden data. Died early, prior to behavioral tests. Only fecal data at the week 7 time point.
concatenated_sample_ID
739_gp1_100+PZQ_wk7_yes
BioSampleModel
Metagenome or environmental