Fecal bacterial microbiota of mus musculus
feces metagenome
host
Mus musculus
isolation_source
feces
collection_date
2017-07-20
geo_loc_name
USA: Corvallis, Oregon
lat_lon
44.565296 N 123.276016 W
samp_mat_process
flash frozen in liquid nitrogen, maintained at -80 C until processing
group
Group 1
week
10
dose
100+PZQ
infection_status
Yes
Mouse_ID
5692
Unique_Description
5692_gp1_100+PZQ_wk10_yes
Male_Worms
0
Female_Worms
0
Total_paired_females
0
Total_worms
0
Weight_Necropsy
21.37
Date_Necropsy
2017-08-07T00:00:00
IFNy
0
IL10
8.86
IL17A
5.25
IL1
17.03
IL23
348.03
IL4
0
TNFalpha
2.65
MB_full
0
MB_moved
14
MBpartial50
9
MB_burried
9
OF_Day
1
OF_Arena
4
OF_Trial_Z1andZ2
2
OF_N_Ent_Z1
21
OF_Lat_T_Z1
0
OF_V_Mean_Z1
4.2
OF_Dist_Z1
1059.2
OF_Dpercentage_Z1
78.1
OF_P_Time_Z1
250.4
OF_PTpercentage_Z1
83.5
OF_N_Ent_Z2
21
OF_Lat_T_Z2
7.4
OF_V_Mean_Z2
6
OF_Dist_Z2
296.3
OF_Dpercentage_Z2
21.9
OF_P_Time_Z2
49.6
OF_PTpercentage_Z2
16.5
OF_N_Ent_TOTAL
42
OF_V_Mean_TOTAL
4.5
OF_Dist_TOTAL
1355.5
OF_P_Time_TOTAL
300
Corr_CD_Place_trial_E1
8709.73601
Corr_CD_Place_trial_E2
9402.53501
Corr_CD_Place_trial_E3
3562.36948
Corr_CD_Place_trial_E4
2664.12365
Corr_CD_Place_trial_E5
3256.94641
Corr_CD_Place_trial_E6
3267.15316
Corr_Avg_Prox_Probe_trials_PR0
NA
Corr_Avg_Prox_Probe_trials_PR1
NA
Corr_Avg_Prox_Probe_trials_PR2
NA
Corr_Avg_Prox_Probe_trials_PR3
NA
Place_Probe_trial_groups
NA
Testing_group_NO
1.7
NO_Arena
4
T4_Obj1
14
T4_Obj2
14
T4_TT
28
T5_Obj1
13
T5_Obj2
24
T5_TT
37
T6_Obj1
15
T6_Obj2
26
T6_TT
41
T4_DO
0.5
T5_DO
0.64864865
T6_DO
0.63414634
T4_DI
0
T5_DI
0.2972973
T6_DI
0.26829268
Comments
Exposed and received PZQ treatment, but no worm burden after perfusion, found some decaying worms, likely in the process of clearing infection but had liver pahology. Categorized as infected.
concatenated_sample_ID
5692_gp1_100+PZQ_wk10_yes
BioSampleModel
Metagenome or environmental