Roscoff_BasBIo_S2_20210519-20220512_MF100
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00682_18S
ampl_size
350
arms_unit_id
BasBloS2
broad-scale environmental context
marine benthic biome [ENVO_01000024]; marine park area [ENVO:00000362]
collection date
2022-05-12
deployment_date
2021-05-19
depth
12
dna concentration
24.5
environmental medium
biomass derived from sieving motile communities present in the retrieval tub of an autonomous reef monitoring structure through a 100 micrometre mesh [ENVO:01001900]
geographic location (country and/or sea)
France
geographic location (latitude)
48.72872
geographic location (locality)
Bay of Morlaix
geographic location (longitude)
-3.95894
geographic location (ocean)
North Atlantic Ocean
geographic location (region and locality)
English Channel
ha_id
Roskogo Ha
lib_layout
PAIRED
library reads sequenced
1693438
local environmental context
rocky reef [ENVO:00000130]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
ROSKOGO
pcr primers
GCTTGTCTCAAAGATTAAGCC; CCTGCTGCCTTCCTTRGA
pcr_blank_1
CEB_DER
pcr_blank_2
CEB_DES
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
No
samp_fraction
MF
samp_site
BasBlo
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00682_18S
samples_alias_orig
EMOBON00682
sampling_event
Roskogo_BasBloS2_Ha_210519_220512
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240313
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
100
source material identifiers
EMOBON_Roskogo_Ha_22
source_mat_id_an
EMOBON_Roskogo_Ha_22_metab18SV1V2
source_mat_id_orig
Roscoff_BasBIo_S2_20210519-20220512_MF100
status
sample
target gene
18S rRNA
target subfragment
V1-V2
total depth of water column
12