Fecal bacterial microbiota of mus musculus
feces metagenome
host
Mus musculus
isolation_source
feces
collection_date
2017-07-20
geo_loc_name
USA: Corvallis, Oregon
lat_lon
44.565296 N 123.276016 W
samp_mat_process
flash frozen in liquid nitrogen, maintained at -80 C until processing
group
Group 1
week
10
dose
100+PZQ
infection_status
Yes
Mouse_ID
5669
Unique_Description
5669_gp1_100+PZQ_wk10_yes
Male_Worms
NA
Female_Worms
NA
Total_paired_females
NA
Total_worms
NA
Weight_Necropsy
NA
Date_Necropsy
NA
IFNy
NA
IL10
NA
IL17A
NA
IL1
NA
IL23
NA
IL4
NA
TNFalpha
NA
MB_full
2
MB_moved
15
MBpartial50
9
MB_burried
11
OF_Day
1
OF_Arena
1
OF_Trial_Z1andZ2
4
OF_N_Ent_Z1
23
OF_Lat_T_Z1
0
OF_V_Mean_Z1
4.6
OF_Dist_Z1
1184.4
OF_Dpercentage_Z1
75.2
OF_P_Time_Z1
258.2
OF_PTpercentage_Z1
86.1
OF_N_Ent_Z2
23
OF_Lat_T_Z2
8.6
OF_V_Mean_Z2
9.3
OF_Dist_Z2
390.4
OF_Dpercentage_Z2
24.8
OF_P_Time_Z2
41.8
OF_PTpercentage_Z2
13.9
OF_N_Ent_TOTAL
46
OF_V_Mean_TOTAL
5.2
OF_Dist_TOTAL
1574.8
OF_P_Time_TOTAL
300
Corr_CD_Place_trial_E1
7249.26051
Corr_CD_Place_trial_E2
12473.6002
Corr_CD_Place_trial_E3
5887.53577
Corr_CD_Place_trial_E4
6735.10965
Corr_CD_Place_trial_E5
6242.15135
Corr_CD_Place_trial_E6
6244.08776
Corr_Avg_Prox_Probe_trials_PR0
34.4454932
Corr_Avg_Prox_Probe_trials_PR1
25.355243
Corr_Avg_Prox_Probe_trials_PR2
33.7347821
Corr_Avg_Prox_Probe_trials_PR3
19.6307107
Place_Probe_trial_groups
G1
Testing_group_NO
1.4
NO_Arena
1
T4_Obj1
23
T4_Obj2
26
T4_TT
49
T5_Obj1
18
T5_Obj2
20
T5_TT
38
T6_Obj1
18
T6_Obj2
34
T6_TT
52
T4_DO
0.53061224
T5_DO
0.52631579
T6_DO
0.65384615
T4_DI
0.06122449
T5_DI
0.05263158
T6_DI
0.30769231
Comments
Exposed and received PZQ treatment, missing worm burden data (no perfusion) but had liver pahology. Categorized as infected.
concatenated_sample_ID
5669_gp1_100+PZQ_wk10_yes
BioSampleModel
Metagenome or environmental