LukaKP_A1_20.06.2022-10.10.2022_S_1mm
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00773_18S
ampl_size
350
arms_unit_id
LukaKP_A1
broad-scale environmental context
marine benthic biome [ENVO_01000024]; marine reef biome [ENVO:01000029]
collection date
2022-10-10
deployment_date
2022-06-20
depth
3
dna concentration
0.19
environmental medium
blended biomass derived from sessile communities colonising an autonomous reef monitoring structure [ENVO:01001863]
geographic location (country and/or sea)
Slovenia
geographic location (latitude)
45.564856
geographic location (locality)
Gulf of Piran
geographic location (longitude)
13.743586
geographic location (ocean)
Mediterranean Sea
geographic location (region and locality)
Adriatic Sea
ha_id
Piran Ha
lib_layout
PAIRED
library reads sequenced
13360125
local environmental context
human construction [ENVO:00000070]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
Piran
pcr primers
GCTTGTCTCAAAGATTAAGCC; CCTGCTGCCTTCCTTRGA
pcr_blank_1
CEB_DEZ
pcr_blank_2
CEB_DFA
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
No
samp_fraction
SF
samp_site
Luka Koper
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00773_18S
samples_alias_orig
EMOBON00773
sampling_event
Piran_LukaKP_Ha_220620_221010
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240411
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
1000
source material identifiers
EMOBON_Piran_Ha_13
source_mat_id_an
EMOBON_Piran_Ha_13_metab18SV1V2
source_mat_id_orig
LukaKP_A1_20.06.2022-10.10.2022_S_1mm
status
sample
target gene
18S rRNA
target subfragment
V1-V2
total depth of water column
3