MAG from sample FBB02.1
Alphaproteobacteria bacterium
16S recovery software
infernal v1.1.5, Rfam 15.0
16s recovered
Yes
ENA first public
2025-08-01
INSDC center name
Uni Bremen
INSDC status
public
MAG coverage software
bowtie2 v2.5.4
Submitter Id
AGTU_28_bin_25_orig
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs.
assembly software
SPAdes v4.0.0
binning parameters
differential coverage, tetranucleotide frequency
binning software
concoct v1.1.0, metabat2 v2.17, semibin2 v2.2.0, vamb v5.0.4
broad-scale environmental context
marine biome [ENVO:00000447]
collection date
2005-07-22
completeness score
92.4
completeness software
checkm2 v1.1.0
contamination score
0.15
environmental medium
saline water [ENVO:00002010]
geographic location (country and/or sea)
France
geographic location (latitude)
42.48212
geographic location (longitude)
3.12748
isolation_source
marine water
local environmental context
sandy beach [ENVO:00002199]
metagenomic source
marine plankton metagenome
number of standard tRNAs extracted
36
project name
Investigation of environmental disturbances on microbial communities in coastal environments
reassembly post binning
No
sample derived from
ERR15116709
sample name
AGTU_28_bin_25_orig
scientific_name
Alphaproteobacteria bacterium
tRNA extraction software
tRNAscan-SE 2.0
taxonomic classification
gtdbtk v2.4.1, Genome Taxonomy Database R226
taxonomic identity marker
multi-marker approach