ARMS_Laesoe2_210819-220815_SF40_A
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00813_18S
ampl_size
350
arms_unit_id
Laesoe2
broad-scale environmental context
marine benthic biome [ENVO_01000024], marine subtidal rocky reef biome [ENVO:01000050]
collection date
2022-08-15
crate_cover
Yes
deployment_date
2021-08-19
depth
10
dna concentration
51.52
environmental medium
blended biomass derived from sessile communities colonising an autonomous reef monitoring structure [ENVO:01001863]
geographic location (country and/or sea)
Denmark
geographic location (latitude)
57.25692
geographic location (locality)
Læsø, Sydlige del
geographic location (longitude)
11.14197
geographic location (ocean)
Kattegat
geographic location (region and locality)
Danish part of the Kattegat
ha_id
Laesoe Ha
lib_layout
PAIRED
library reads sequenced
8963033
local environmental context
boulders [ENVO:01000243]; rocky reef [ENVO:00000130]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
Denmark
pcr primers
GCTTGTCTCAAAGATTAAGCC; CCTGCTGCCTTCCTTRGA
pcr_blank_1
CEB_DFR
pcr_blank_2
CEB_DFS
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
No
samp_fraction
SF
samp_site
Laesoe
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00813_18S
samples_alias_orig
EMOBON00813
sampling_event
Laesoe_Laesoe2_Ha_210819_220815
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240411
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
40
source material identifiers
EMOBON_Denmark_Ha_6
source_mat_id_an
EMOBON_Denmark_Ha_6_metab18SV1V2
source_mat_id_orig
ARMS_Laesoe2_210819-220815_SF40_A
status
sample
target gene
18S rRNA
target subfragment
V1-V2
total depth of water column
10