ARMS_GALWAY_GURR3_210720-220907_MF500_A
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00747_18S
ampl_size
350
arms_unit_id
Gurr3
broad-scale environmental context
marine benthic biome [ENVO_01000024]; marine reef biome [ENVO:01000029]
collection date
2022-09-07
deployment_date
2021-07-20
depth
7.2
dna concentration
31.5
environmental medium
biomass derived from sieving motile communities present in the retrieval tub of an autonomous reef monitoring structure through a 500 micrometre mesh [ENVO:01001901]
geographic location (country and/or sea)
Ireland
geographic location (latitude)
53.315443
geographic location (locality)
Kilkieran Bay and Islands
geographic location (longitude)
-9.671564
geographic location (ocean)
North Atlantic Ocean
geographic location (region and locality)
Celtic Sea
ha_id
Galway Ha
lib_layout
PAIRED
library reads sequenced
496861
local environmental context
sandy sediment [ENVO:01000118]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
Galway
pcr primers
GCTTGTCTCAAAGATTAAGCC; CCTGCTGCCTTCCTTRGA
pcr_blank_1
CEB_DEZ
pcr_blank_2
CEB_DFA
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
No
samp_fraction
MF
samp_site
Gurr
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00747_18S
samples_alias_orig
EMOBON00747
sampling_event
Galway_Gurr3_Ha_210720_220907
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240409
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
500
source material identifiers
EMOBON_Galway_Ha_9
source_mat_id_an
EMOBON_Galway_Ha_9_metab18SV1V2
source_mat_id_orig
ARMS_GALWAY_GURR3_210720-220907_MF500_A
status
sample
target gene
18S rRNA
target subfragment
V1-V2
total depth of water column
7.2