ARMS_Bodo_GStraB_MF500
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00819_18S
ampl_size
350
arms_unit_id
GStraM
broad-scale environmental context
marine biome [ENVO:00000447], marine benthic biome [ENVO_01000024]; marine park area [ENVO:00000362]
collection date
2022-11-17
deployment_date
2021-06-17
depth
2
dna concentration
11894
environmental medium
biomass derived from sieving motile communities present in the retrieval tub of an autonomous reef monitoring structure through a 500 micrometre mesh [ENVO:01001901]
geographic location (country and/or sea)
Norway
geographic location (latitude)
67.24035
geographic location (locality)
Vestfjorden
geographic location (longitude)
14.711733
geographic location (ocean)
North Atlantic Ocean
geographic location (region and locality)
Norwegian Sea
ha_id
Bodo Ha
lib_layout
PAIRED
library reads sequenced
1605270
local environmental context
artificial reef [ENVO:00000149], sandy sediment [ENVO:01000118]; silty sediment [ENVO:01000119]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
Bodo
pcr primers
GCTTGTCTCAAAGATTAAGCC; CCTGCTGCCTTCCTTRGA
pcr_blank_1
CEB_DFR
pcr_blank_2
CEB_DFS
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
No
samp_fraction
MF
samp_site
Bodo_G_Stra_M
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00819_18S
samples_alias_orig
EMOBON00819
sampling_event
Bodo_GStraM_Ha_210617_221117
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240411
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
500
source material identifiers
EMOBON_Bodo_Ha_3
source_mat_id_an
EMOBON_Bodo_Ha_3_metab18SV1V2
source_mat_id_orig
ARMS_Bodo_GStraB_MF500
status
sample
target gene
18S rRNA
target subfragment
V1-V2
total depth of water column
2