ARMS6_Crete_1HERP_20200903_20210626 MF 500um
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00715_COI
ampl_size
310
arms_unit_id
HCMR-1_1
broad-scale environmental context
marine benthic biome [ENVO_01000024]; marine reef biome [ENVO:01000029]
collection date
2021-06-26
crate_cover
Yes
deployment_date
2020-09-03
depth
4
dna concentration
5.06
environmental medium
biomass derived from sieving motile communities present in the retrieval tub of an autonomous reef monitoring structure through a 500 micrometre mesh [ENVO:01001901]
geographic location (country and/or sea)
Greece
geographic location (latitude)
35.34662
geographic location (locality)
Crete Island - UBPC
geographic location (longitude)
25.27876
geographic location (ocean)
Mediterranean Sea
geographic location (region and locality)
Aegean Sea
ha_id
HCMR-1 Ha
lib_layout
PAIRED
library reads sequenced
4671717
local environmental context
sandy sediment [ENVO:01000118]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
HCMR-1
pcr primers
GGWACWGGWTGAACWGTWTAYCCYCC; TAIACYTCIGGRTGICCRAARAAYCA
pcr_blank_1
CEB_DET
pcr_blank_2
CEB_DEU
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
No
samp_fraction
MF
samp_site
HCMR-1
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00715_COI
samples_alias_orig
EMOBON00715
sampling_event
HCMR-1_1HERP_Ha_200903_210626
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240220
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
500
source material identifiers
EMOBON_HCMR-1_Ha_3
source_mat_id_an
EMOBON_HCMR-1_Ha_3_metabCOI
source_mat_id_orig
ARMS6_Crete_1HERP_20200903_20210626 MF 500um
status
sample
target gene
COI
total depth of water column
21