Fecal bacterial microbiota of mus musculus
feces metagenome
host
Mus musculus
isolation_source
feces
collection_date
2017-06-29
geo_loc_name
USA: Corvallis, Oregon
lat_lon
44.565296 N 123.276016 W
samp_mat_process
flash frozen in liquid nitrogen, maintained at -80 C until processing
group
Group 1
week
7
dose
75
infection_status
Yes
Mouse_ID
5658
Unique_Description
5658_gp1_75_wk7_yes
Male_Worms
NA
Female_Worms
NA
Total_paired_females
NA
Total_worms
NA
Weight_Necropsy
NA
Date_Necropsy
2017-08-03T00:00:00
IFNy
1.27
IL10
6.62
IL17A
0
IL1
0
IL23
229.96
IL4
3.78
TNFalpha
2.2
MB_full
0
MB_moved
2
MBpartial50
1
MB_burried
1
OF_Day
1
OF_Arena
3
OF_Trial_Z1andZ2
1
OF_N_Ent_Z1
29
OF_Lat_T_Z1
0
OF_V_Mean_Z1
5.9
OF_Dist_Z1
1403.4
OF_Dpercentage_Z1
74.8
OF_P_Time_Z1
237.2
OF_PTpercentage_Z1
79.1
OF_N_Ent_Z2
30
OF_Lat_T_Z2
26.6
OF_V_Mean_Z2
7.5
OF_Dist_Z2
471.6
OF_Dpercentage_Z2
25.2
OF_P_Time_Z2
62.8
OF_PTpercentage_Z2
20.9
OF_N_Ent_TOTAL
59
OF_V_Mean_TOTAL
6.2
OF_Dist_TOTAL
1874.9
OF_P_Time_TOTAL
300
Corr_CD_Place_trial_E1
9439.533645649764
Corr_CD_Place_trial_E2
7696.173184423844
Corr_CD_Place_trial_E3
11156.951765780961
Corr_CD_Place_trial_E4
2907.307075173581
Corr_CD_Place_trial_E5
5601.420369131688
Corr_CD_Place_trial_E6
6785.92362035458
Corr_Avg_Prox_Probe_trials_PR0
45.90988483416284
Corr_Avg_Prox_Probe_trials_PR1
36.887793925049564
Corr_Avg_Prox_Probe_trials_PR2
32.22700335372086
Corr_Avg_Prox_Probe_trials_PR3
29.77234065160799
Place_Probe_trial_groups
G1
Testing_group_NO
1.2
NO_Arena
4
T4_Obj1
16
T4_Obj2
17
T4_TT
33
T5_Obj1
18
T5_Obj2
40
T5_TT
58
T6_Obj1
12
T6_Obj2
19
T6_TT
31
T4_DO
0.5151515151515151
T5_DO
0.6896551724137931
T6_DO
0.6129032258064516
T4_DI
0.030303030303030304
T5_DI
0.3793103448275862
T6_DI
0.22580645161290322
Comments
Reason for missing worm burden data is due to an incomplete perfusion, but had granulomas in liver. Therefore classified as being infected.
concatenated_sample_ID
5658_gp1_75_wk7_yes
BioSampleModel
Metagenome or environmental