Fecal bacterial microbiota of mus musculus
feces metagenome
host
Mus musculus
isolation_source
feces
collection_date
2017-07-20
geo_loc_name
USA: Corvallis, Oregon
lat_lon
44.565296 N 123.276016 W
samp_mat_process
flash frozen in liquid nitrogen, maintained at -80 C until processing
group
Group 1
week
10
dose
100+PZQ
infection_status
Yes
Mouse_ID
5668
Unique_Description
5668_gp1_100+PZQ_wk10_yes
Male_Worms
0
Female_Worms
0
Total_paired_females
0
Total_worms
0
Weight_Necropsy
22.3
Date_Necropsy
2017-08-06T00:00:00
IFNy
0
IL10
0
IL17A
0
IL1
0
IL23
12.64
IL4
0
TNFalpha
0
MB_full
1
MB_moved
13
MBpartial50
2
MB_burried
3
OF_Day
1
OF_Arena
6
OF_Trial_Z1andZ2
4
OF_N_Ent_Z1
35
OF_Lat_T_Z1
1.2
OF_V_Mean_Z1
6.3
OF_Dist_Z1
1608.2
OF_Dpercentage_Z1
77.1
OF_P_Time_Z1
254.8
OF_PTpercentage_Z1
84.9
OF_N_Ent_Z2
34
OF_Lat_T_Z2
0
OF_V_Mean_Z2
10.6
OF_Dist_Z2
478.5
OF_Dpercentage_Z2
22.9
OF_P_Time_Z2
45.2
OF_PTpercentage_Z2
15.1
OF_N_Ent_TOTAL
69
OF_V_Mean_TOTAL
7
OF_Dist_TOTAL
2086.7
OF_P_Time_TOTAL
300
Corr_CD_Place_trial_E1
7984.1565
Corr_CD_Place_trial_E2
12101.3386
Corr_CD_Place_trial_E3
7724.942
Corr_CD_Place_trial_E4
4825.34629
Corr_CD_Place_trial_E5
4392.80538
Corr_CD_Place_trial_E6
5441.56108
Corr_Avg_Prox_Probe_trials_PR0
46.4093716
Corr_Avg_Prox_Probe_trials_PR1
44.3260462
Corr_Avg_Prox_Probe_trials_PR2
31.3229205
Corr_Avg_Prox_Probe_trials_PR3
25.6552551
Place_Probe_trial_groups
G1
Testing_group_NO
1.3
NO_Arena
6
T4_Obj1
39
T4_Obj2
34
T4_TT
73
T5_Obj1
15
T5_Obj2
32
T5_TT
47
T6_Obj1
15
T6_Obj2
36
T6_TT
51
T4_DO
0.46575342
T5_DO
0.68085106
T6_DO
0.70588235
T4_DI
-0.0684932
T5_DI
0.36170213
T6_DI
0.41176471
Comments
Exposed and received PZQ treatment, but no worm burden after perfusion, likely cleared infection but had liver pahology. Categorized as infected.
concatenated_sample_ID
5668_gp1_100+PZQ_wk10_yes
BioSampleModel
Metagenome or environmental