ARMS_Svalbard_S1C_200806_220803_MF500_DMSO_R1
metagenome
INSDC center name
European Marine Biological Resource Centre
Submitter Id
EMOBON00755_18S
ampl_size
350
arms_unit_id
S1C
broad-scale environmental context
marine benthic biome [ENVO_01000024]; natural environment [ENVO:01000951]; marine subtidal rocky reef biome [ENVO:01000050]
collection date
2022-08-03
deployment_date
2020-08-06
depth
14
dna concentration
11.85
environmental medium
biomass derived from sieving motile communities present in the retrieval tub of an autonomous reef monitoring structure through a 500 micrometre mesh [ENVO:01001901]
geographic location (country and/or sea)
Norway
geographic location (latitude)
78.21302778
geographic location (locality)
85G5
geographic location (longitude)
15.23361111
geographic location (ocean)
Greenland Sea
geographic location (region and locality)
Norwegian part of the Greenland Sea (Svalbard)
ha_id
Svalbard Ha
lib_layout
PAIRED
library reads sequenced
993242
local environmental context
boulders [ENVO:01000243]; rocky reef [ENVO:00000130]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
Svalbard
pcr primers
GCTTGTCTCAAAGATTAAGCC; CCTGCTGCCTTCCTTRGA
pcr_blank_1
CEB_DEZ
pcr_blank_2
CEB_DFA
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
No
samp_fraction
MF
samp_site
Svalbard
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample name
EMOBON00755_18S
samples_alias_orig
EMOBON00755
sampling_event
Svalbard_S1C_Ha_200806_220803
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240409
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
500
source material identifiers
EMOBON_Svalbard_Ha_36
source_mat_id_an
EMOBON_Svalbard_Ha_36_metab18SV1V2
source_mat_id_orig
ARMS_Svalbard_S1C_200806_220803_MF500_DMSO_R1
status
sample
target gene
18S rRNA
target subfragment
V1-V2
total depth of water column
14