EMOBON_Koster_VH3_Ha_210608_220609_SF40_(2)
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00733_COI
ampl_size
310
arms_unit_id
VH3A
broad-scale environmental context
marine biome [ENVO:00000447];marine benthic biome[ENVO:01000024];marine reef biome [ENVO:01000029];marine subtidal rocky reef biome [ENVO:01000050]
collection date
2022-06-09
crate_cover
Yes
deployment_date
2021-06-08
depth
25
dna concentration
15.75
environmental medium
blended biomass derived from sessile communities colonising an autonomous reef monitoring structure [ENVO:01001863]
geographic location (country and/or sea)
Sweden
geographic location (latitude)
58.876466
geographic location (locality)
Kosterfjorden-Väderöfjorden
geographic location (longitude)
11.106675
geographic location (ocean)
North Atlantic Ocean
geographic location (region and locality)
Skagerrak
ha_id
Koster Ha
lib_layout
PAIRED
library reads sequenced
4985792
local environmental context
shallow_marine_sediment_[ENVO:03000034];fjord [ENVO:00000039];artificial reef [ENVO:00000149]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
Koster
pcr primers
GGWACWGGWTGAACWGTWTAYCCYCC; TAIACYTCIGGRTGICCRAARAAYCA
pcr_blank_1
CEB_DFD
pcr_blank_2
CEB_DFE
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
2
resequencing
No
samp_fraction
SF
samp_site
Vaderofjorden
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00733_COI
samples_alias_orig
EMOBON00733
sampling_event
Koster_VH3_Ha_210608_220609
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240409
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
40
source material identifiers
EMOBON_Koster_Ha_16
source_mat_id_an
EMOBON_Koster_Ha_16_metabCOI
source_mat_id_orig
EMOBON_Koster_VH3_Ha_210608_220609_SF40_(2)
status
sample
target gene
COI
total depth of water column
25