Roscoff_MarBIo_S3_210621-211013_MF500
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00677_18S
ampl_size
350
arms_unit_id
MarBloS3
broad-scale environmental context
marine benthic biome [ENVO_01000024]; harbor [ENVO:00000463]
collection date
2021-10-11
deployment_date
2021-06-21
depth
1
dna concentration
68.3
environmental medium
biomass derived from sieving motile communities present in the retrieval tub of an autonomous reef monitoring structure through a 500 micrometre mesh [ENVO:01001901]
geographic location (country and/or sea)
France
geographic location (latitude)
48.71751
geographic location (locality)
Penzé Estuary
geographic location (longitude)
-3.96649
geographic location (ocean)
North Atlantic Ocean
geographic location (region and locality)
English Channel
ha_id
Roskogo Ha
lib_layout
PAIRED
library reads sequenced
3214253
local environmental context
rocky reef [ENVO:00000130]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
ROSKOGO
pcr primers
GCTTGTCTCAAAGATTAAGCC; CCTGCTGCCTTCCTTRGA
pcr_blank_1
CEB_DER
pcr_blank_2
CEB_DES
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
No
samp_fraction
MF
samp_site
MarBlo
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00677_18S
samples_alias_orig
EMOBON00677
sampling_event
Roskogo_MarBloS3_Ha_210621-211013
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240313
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
500
source material identifiers
EMOBON_Roskogo_Ha_17
source_mat_id_an
EMOBON_Roskogo_Ha_17_metab18SV1V2
source_mat_id_orig
Roscoff_MarBIo_S3_210621-211013_MF500
status
sample
target gene
18S rRNA
target subfragment
V1-V2
total depth of water column
1