EMO BON Toralla JTA ARMS 210701 211009 MF500 (1)
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00625_18S
ampl_size
350
arms_unit_id
JTA
broad-scale environmental context
marine benthic biome [ENVO_01000024]; harbor [ENVO:00000463]; marine reef biome [ENVO:01000029]
collection date
2021-10-09
deployment_date
2021-07-01
depth
12
dna concentration
4378
environmental medium
biomass derived from sieving motile communities present in the retrieval tub of an autonomous reef monitoring structure through a 500 micrometre mesh [ENVO:01001901]
geographic location (country and/or sea)
Spain
geographic location (latitude)
42.2284
geographic location (locality)
1,3E+02
geographic location (longitude)
-8.7787
geographic location (ocean)
North Atlantic Ocean
geographic location (region and locality)
Spanish Atlantic Coast
ha_id
EMT21 Ha
lib_layout
PAIRED
library reads sequenced
2429973
local environmental context
sandy sediment [ENVO:01000118]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
EMT21
pcr primers
GCTTGTCTCAAAGATTAAGCC; CCTGCTGCCTTCCTTRGA
pcr_blank_1
CEB_DFR
pcr_blank_2
CEB_DFS
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
No
samp_fraction
MF
samp_site
Toralla
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00625_18S
samples_alias_orig
EMOBON00625
sampling_event
EMT21_TorallaA_Ha_210701_211009
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240411
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
500
source material identifiers
EMOBON_EMT21_Ha_8
source_mat_id_an
EMOBON_EMT21_Ha_8_metab18SV1V2
source_mat_id_orig
EMO BON Toralla JTA ARMS 210701 211009 MF500 (1)
status
sample
target gene
18S rRNA
target subfragment
V1-V2
total depth of water column
5