ARMS_TZS_KUMM_210609_220622_SF40_ETOH_A
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00800_COI
ampl_size
310
arms_unit_id
KUMM
broad-scale environmental context
marine benthic biome [ENVO_01000024]; harbor [ENVO:00000463]; marine subtidal rocky reef biome [ENVO:01000050]
collection date
2022-06-22
crate_cover
Yes
deployment_date
2021-06-09
depth
6
dna concentration
39.76
environmental medium
blended biomass derived from sessile communities colonising an autonomous reef monitoring structure [ENVO:01001863]
geographic location (country and/or sea)
Finland
geographic location (latitude)
59.86442
geographic location (locality)
Tammisaaren Ja Hangon Saariston Ja Pohjanpitäjänlahden Merensuojelualue
geographic location (longitude)
23.265084
geographic location (ocean)
Baltic Sea
geographic location (region and locality)
Finnish part of the Baltic Sea
ha_id
TZS Ha
lib_layout
PAIRED
library reads sequenced
4988214
local environmental context
rocky reef [ENVO:00000130]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
TZS_STOR
pcr primers
GGWACWGGWTGAACWGTWTAYCCYCC; TAIACYTCIGGRTGICCRAARAAYCA
pcr_blank_1
CEB_DFD
pcr_blank_2
CEB_DFE
preservative
ETOH
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
No
samp_fraction
SF
samp_site
Kummelkobben
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00800_COI
samples_alias_orig
EMOBON00800
sampling_event
TZS_Kummelkobben_Ha_210609_220622
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240409
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
40
source material identifiers
EMOBON_TZS_Ha_15
source_mat_id_an
EMOBON_TZS_Ha_15_metabCOI
source_mat_id_orig
ARMS_TZS_KUMM_210609_220622_SF40_ETOH_A
status
sample
target gene
COI
total depth of water column
6