ARMS_RAVH1_20220428-20220718_SF40_A
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00640_COI
ampl_size
310
arms_unit_id
RavH1
broad-scale environmental context
marine benthic biome [ENVO_01000024]; marine reef biome [ENVO:01000029]
collection date
2022-07-18
deployment_date
2022-04-28
depth
1.5
dna concentration
6.37
environmental medium
blended biomass derived from sessile communities colonising an autonomous reef monitoring structure [ENVO:01001863]
geographic location (country and/or sea)
Italy
geographic location (latitude)
44.421488
geographic location (locality)
Italian part of the Adriatic Sea
geographic location (longitude)
12.209497
geographic location (ocean)
Mediterranean Sea
geographic location (region and locality)
Adriatic Sea
ha_id
UniBologna Ha
lib_layout
PAIRED
library reads sequenced
1877885
local environmental context
sandy sediment [ENVO:01000118]; muddy soil [ENVO:00005771]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
UniBologna
pcr primers
GGWACWGGWTGAACWGTWTAYCCYCC; TAIACYTCIGGRTGICCRAARAAYCA
pcr_blank_1
CEB_DET
pcr_blank_2
CEB_DEU
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
No
samp_fraction
SF
samp_site
Ravenna Harbor
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00640_COI
samples_alias_orig
EMOBON00640
sampling_event
RavHarbour_RavH1_Ha_220428_220718
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240313
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
40
source material identifiers
EMOBON_Italy_Ha_10
source_mat_id_an
EMOBON_Italy_Ha_10_metabCOI
source_mat_id_orig
ARMS_RAVH1_20220428-20220718_SF40_A
status
sample
target gene
COI
total depth of water column
1.5