ARMS_Crete_2UBPC_20201120_20220901 SF(1)
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00721_18S
ampl_size
350
arms_unit_id
HCMR-1_2
broad-scale environmental context
marine benthic biome [ENVO_01000024]; marine reef biome [ENVO:01000029]
collection date
2022-09-01
crate_cover
Yes
deployment_date
2020-11-20
depth
21
dna concentration
2.37
environmental medium
blended biomass derived from sessile communities colonising an autonomous reef monitoring structure [ENVO:01001863]
geographic location (country and/or sea)
Greece
geographic location (latitude)
35.34662
geographic location (locality)
Crete Island - UBPC
geographic location (longitude)
25.27876
geographic location (ocean)
Mediterranean Sea
geographic location (region and locality)
Aegean Sea
ha_id
HCMR-1 Ha
lib_layout
PAIRED
library reads sequenced
2772392
local environmental context
sandy sediment [ENVO:01000118]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
HCMR-1
pcr primers
GCTTGTCTCAAAGATTAAGCC; CCTGCTGCCTTCCTTRGA
pcr_blank_1
CEB_DER
pcr_blank_2
CEB_DES
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
No
samp_fraction
SF
samp_site
HCMR-1
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00721_18S
samples_alias_orig
EMOBON00721
sampling_event
HCMR-1_2UBPC_Ha_201120_220901
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240313
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
source material identifiers
EMOBON_HCMR-1_Ha_9
source_mat_id_an
EMOBON_HCMR-1_Ha_9_metab18SV1V2
source_mat_id_orig
ARMS_Crete_2UBPC_20201120_20220901 SF(1)
status
sample
target gene
18S rRNA
target subfragment
V1-V2
total depth of water column
21