Fecal bacterial microbiota of mus musculus
feces metagenome
host
Mus musculus
isolation_source
feces
collection_date
2017-06-29
geo_loc_name
USA: Corvallis, Oregon
lat_lon
44.565296 N 123.276016 W
samp_mat_process
flash frozen in liquid nitrogen, maintained at -80 C until processing
group
Group 1
week
7
dose
100+PZQ
infection_status
Yes
Mouse_ID
5668
Unique_Description
5668_gp1_100+PZQ_wk7_yes
Male_Worms
0
Female_Worms
0
Total_paired_females
0
Total_worms
0
Weight_Necropsy
22.3
Date_Necropsy
2017-08-06T00:00:00
IFNy
0
IL10
0
IL17A
0
IL1
0
IL23
12.64
IL4
0
TNFalpha
0
MB_full
1
MB_moved
13
MBpartial50
2
MB_burried
3
OF_Day
1
OF_Arena
6
OF_Trial_Z1andZ2
4
OF_N_Ent_Z1
35
OF_Lat_T_Z1
1.2
OF_V_Mean_Z1
6.3
OF_Dist_Z1
1608.2
OF_Dpercentage_Z1
77.1
OF_P_Time_Z1
254.8
OF_PTpercentage_Z1
84.9
OF_N_Ent_Z2
34
OF_Lat_T_Z2
0
OF_V_Mean_Z2
10.6
OF_Dist_Z2
478.5
OF_Dpercentage_Z2
22.9
OF_P_Time_Z2
45.2
OF_PTpercentage_Z2
15.1
OF_N_Ent_TOTAL
69
OF_V_Mean_TOTAL
7
OF_Dist_TOTAL
2086.7
OF_P_Time_TOTAL
300
Corr_CD_Place_trial_E1
7984.156500891235
Corr_CD_Place_trial_E2
12101.338629328646
Corr_CD_Place_trial_E3
7724.942000086226
Corr_CD_Place_trial_E4
4825.346294308803
Corr_CD_Place_trial_E5
4392.8053824464405
Corr_CD_Place_trial_E6
5441.56107636075
Corr_Avg_Prox_Probe_trials_PR0
46.40937162889618
Corr_Avg_Prox_Probe_trials_PR1
44.326046190895426
Corr_Avg_Prox_Probe_trials_PR2
31.32292051569052
Corr_Avg_Prox_Probe_trials_PR3
25.655255093380145
Place_Probe_trial_groups
G1
Testing_group_NO
1.3
NO_Arena
6
T4_Obj1
39
T4_Obj2
34
T4_TT
73
T5_Obj1
15
T5_Obj2
32
T5_TT
47
T6_Obj1
15
T6_Obj2
36
T6_TT
51
T4_DO
0.4657534246575342
T5_DO
0.6808510638297872
T6_DO
0.7058823529411765
T4_DI
-0.0684931506849315
T5_DI
0.3617021276595745
T6_DI
0.4117647058823529
Comments
Exposed and received PZQ treatment, but no worm burden after perfusion, likely cleared infection but had liver pahology. Categorized as infected.
concatenated_sample_ID
5668_gp1_100+PZQ_wk7_yes
BioSampleModel
Metagenome or environmental