ARMS_Gdynia_GDY_20200610_20211222_MF500_DMSO
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00782_18S_A
ampl_size
350
arms_unit_id
GDY1
broad-scale environmental context
marine benthic biome [ENVO_01000024]; marine park area [ENVO:00000362], marine subtidal rocky reef biome [ENVO:01000050]
collection date
2021-12-22
crate_cover
Yes
deployment_date
2020-06-10
depth
4
dna concentration
21.6
environmental medium
biomass derived from sieving motile communities present in the retrieval tub of an autonomous reef monitoring structure through a 500 micrometre mesh [ENVO:01001901]
geographic location (country and/or sea)
Poland
geographic location (latitude)
54.48522
geographic location (locality)
Zatoka Pucka
geographic location (longitude)
18.57111
geographic location (ocean)
Baltic Sea
geographic location (region and locality)
Polish part of the Baltic Sea
ha_id
Gdynia Ha
lib_layout
PAIRED
library reads sequenced
3643248
local environmental context
rocky reef [ENVO:00000130]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
Gdynia
pcr primers
GCTTGTCTCAAAGATTAAGCC; CCTGCTGCCTTCCTTRGA
pcr_blank_1
CEB_DEZ
pcr_blank_2
CEB_DFA
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
Yes
resequencing_reason
Low number of sequences
samp_fraction
MF
samp_site
Gdynia
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00782_18S_A
samples_alias_orig
EMOBON00782
sampling_event
Gdynia_GDY_Ha_200610-211222
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240619
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
500
source material identifiers
EMOBON_Gdynia_Ha_1
source_mat_id_an
EMOBON_Gdynia_Ha_1_metab18SV1V2
source_mat_id_orig
ARMS_Gdynia_GDY_20200610_20211222_MF500_DMSO
status
sample
target gene
18S rRNA
target subfragment
V1-V2
total depth of water column
4