ARMS_VEN2_20210623-20220713_MF500_A
metagenome
ENA first public
2026-04-27
INSDC center name
European Marine Biological Resource Centre
INSDC status
public
Submitter Id
EMOBON00636_18S
ampl_size
350
arms_unit_id
Ven2
broad-scale environmental context
marine benthic biome [ENVO_01000024]; marine reef biome [ENVO:01000029]
collection date
2022-07-13
deployment_date
2021-06-23
depth
16
dna concentration
3.77
environmental medium
organic material [ENVO:01000155]
geographic location (country and/or sea)
Italy
geographic location (latitude)
45.316667
geographic location (locality)
Italian part of the Adriatic Sea
geographic location (longitude)
12.50000
geographic location (ocean)
Mediterranean Sea
geographic location (region and locality)
Adriatic Sea
ha_id
UniBologna Ha
lib_layout
PAIRED
library reads sequenced
4605661
local environmental context
sandy sediment [ENVO:01000118]; muddy soil [ENVO:00005771]
nucleic acid extraction
Quick-DNA Fecal/soil
obs_id
UniBologna
pcr primers
GCTTGTCTCAAAGATTAAGCC; CCTGCTGCCTTCCTTRGA
pcr_blank_1
CEB_DEX
pcr_blank_2
CEB_DEY
preservative
DESS
project name
EMOBON
quality_assessment
Pass
relevant standard operating procedures
Prod_ILL_BqADN_SuperLowCost_150_v3
replicate
1
resequencing
No
samp_fraction
MF
samp_site
Venice
sample collection device
autonomous reef monitoring structure [ENVO:01001855]
sample material processing
ARMS Handbook v3.0
sample name
EMOBON00636_18S
samples_alias_orig
EMOBON00636
sampling_event
AdriaticEastCoast_Ven2_Ha_210623_220713
scientific_name
metagenome
sequence_batch
Batch3.2
sequence_batch_rundate
Batch3.2_240313
sequence_quality_check
basic Genoscope QC
sequencing method
Illumina NovaSeq 6000
size_filter
500
source material identifiers
EMOBON_Italy_Ha_6
source_mat_id_an
EMOBON_Italy_Ha_6_metab18SV1V2
source_mat_id_orig
ARMS_VEN2_20210623-20220713_MF500_A
status
sample
target gene
18S rRNA
target subfragment
V1-V2
total depth of water column
16