Fecal bacterial microbiota of mus musculus
feces metagenome
host
Mus musculus
isolation_source
feces
collection_date
2017-07-20
geo_loc_name
USA: Corvallis, Oregon
lat_lon
44.565296 N 123.276016 W
samp_mat_process
flash frozen in liquid nitrogen, maintained at -80 C until processing
group
Group 1
week
10
dose
75
infection_status
No
Mouse_ID
5661
Unique_Description
5661_gp1_75_wk10_no
Male_Worms
0
Female_Worms
0
Total_paired_females
0
Total_worms
0
Weight_Necropsy
20.53
Date_Necropsy
2017-08-03T00:00:00
IFNy
2.31
IL10
0
IL17A
0
IL1
0
IL23
31.12
IL4
1.77
TNFalpha
2.97
MB_full
11
MB_moved
2
MBpartial50
13
MB_burried
13
OF_Day
1
OF_Arena
6
OF_Trial_Z1andZ2
5
OF_N_Ent_Z1
30
OF_Lat_T_Z1
0
OF_V_Mean_Z1
6
OF_Dist_Z1
1085.4
OF_Dpercentage_Z1
68.3
OF_P_Time_Z1
181.6
OF_PTpercentage_Z1
60.5
OF_N_Ent_Z2
31
OF_Lat_T_Z2
11.4
OF_V_Mean_Z2
4.3
OF_Dist_Z2
503.6
OF_Dpercentage_Z2
31.7
OF_P_Time_Z2
118.4
OF_PTpercentage_Z2
39.5
OF_N_Ent_TOTAL
61
OF_V_Mean_TOTAL
5.3
OF_Dist_TOTAL
1589
OF_P_Time_TOTAL
300
Corr_CD_Place_trial_E1
NA
Corr_CD_Place_trial_E2
NA
Corr_CD_Place_trial_E3
NA
Corr_CD_Place_trial_E4
NA
Corr_CD_Place_trial_E5
NA
Corr_CD_Place_trial_E6
NA
Corr_Avg_Prox_Probe_trials_PR0
NA
Corr_Avg_Prox_Probe_trials_PR1
NA
Corr_Avg_Prox_Probe_trials_PR2
NA
Corr_Avg_Prox_Probe_trials_PR3
NA
Place_Probe_trial_groups
NA
Testing_group_NO
1.4
NO_Arena
6
T4_Obj1
35
T4_Obj2
35
T4_TT
70
T5_Obj1
24
T5_Obj2
18
T5_TT
42
T6_Obj1
21
T6_Obj2
26
T6_TT
47
T4_DO
0.5
T5_DO
0.42857143
T6_DO
0.55319149
T4_DI
0
T5_DI
-0.1428571
T6_DI
0.10638298
Comments
Exposed, but 0 worms after perfusion and no liver pathology, thus classified as uninfected.
concatenated_sample_ID
5661_gp1_75_wk10_no
BioSampleModel
Metagenome or environmental