056ac548-13f0-4800-8263-da05b002e8dc-asg-MAGScoT_cleanbin_000017
Rhodothermales bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-02-27
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
056ac548-13f0-4800-8263-da05b002e8dc
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
WILLIAM GROSSMAN
collecting institution
MARINE BIOLOGICAL LABORATORY
collection date
2024-04-10
completeness score
69.95
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
4.74
environmental medium
adult sponge tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
41.57
geographic location (longitude)
-70.70
geographic location (region and locality)
Massachusettes | East Falmouth
habitat
under a culvert bridge in 2' of water that has mostly sand and a few rocks. The area has good tidal flow.
host life stage
juvenile
host scientific name
Clathria prolifera
host sex
not provided
host taxid
1190602
identified_by
WILLIAM GROSSMAN
identifier_affiliation
MARINE BIOLOGICAL LABORATORY
investigation type
metagenome-assembled genome
isolation_source
Sponge: Clathria prolifera
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
32
organism part
WHOLE ORGANISM
project name
ToL
sample derived from
SAMEA117780399
sample name
056ac548-13f0-4800-8263-da05b002e8dc
scientific_name
Rhodothermales bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000353
specimen_voucher
NOT COLLECTED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
odClaProl1.Rhodothermales_1