901e5117-cf45-4a9e-88dd-6c15458d5358-asg-bin.364
Alphaproteobacteria bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
No
ENA first public
2025-02-27
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
901e5117-cf45-4a9e-88dd-6c15458d5358
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
WILLIAM GROSSMAN
collecting institution
MARINE BIOLOGICAL LABORATORY
collection date
2024-05-20
completeness score
17.88
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.09
environmental medium
adult sponge tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
41.63
geographic location (longitude)
-70.64
geographic location (region and locality)
Massachusettes | North Falmouth
habitat
collected under a bridge, ~2 ' of water, fast water moving through there during tides, 53F
host life stage
juvenile
host scientific name
Mycale fibrexilis
host sex
not provided
host taxid
86016
identified_by
WILLIAM GROSSMAN
identifier_affiliation
MARINE BIOLOGICAL LABORATORY
investigation type
metagenome-assembled genome
isolation_source
Sponge: Mycale fibrexilis
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
6
organism part
WHOLE ORGANISM
project name
ToL
sample derived from
SAMEA117780715
sample name
901e5117-cf45-4a9e-88dd-6c15458d5358
scientific_name
Alphaproteobacteria bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000358
specimen_voucher
NOT COLLECTED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
odMycFibr1.Alphaproteobacteria_1