0d11b710-f45e-4c9f-89a4-5961b070786e-asg-MAGScoT_cleanbin_000002
Brevundimonas sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2025-04-17
GAL
Queen Mary University of London
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
0d11b710-f45e-4c9f-89a4-5961b070786e
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
ROBERT VRIJENHOEK
collecting institution
MONTEREY BAY AQUARIUM RESEARCH INSTITUTE
collection date
2000-08-14
completeness score
90.16
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.49
depth
3311
environmental medium
adult annelid tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
41.00
geographic location (longitude)
-127.49
geographic location (region and locality)
Pacific Ocean off northern California | Gorda Ridge | NESCA Northern Escanaba Trough site
habitat
hydrothermal vent
host life stage
not collected
host scientific name
Ridgeia piscesae
host sex
not collected
host taxid
27915
identified_by
ROBERT VRIJENHOEK
identifier_affiliation
MONTEREY BAY AQUARIUM RESEARCH INSTITUTE
investigation type
metagenome-assembled genome
isolation_source
Annelid: Ridgeia piscesae
local environmental context
marine biome
metagenomic source
annelid metagenome
number of standard tRNAs extracted
45
organism part
WHOLE ORGANISM
project name
ASG
proxy voucher
SIO:BIC:A11988
proxy voucher url
https://sioapps.ucsd.edu/collections/bi/catalog/A11988/
sample collection device or method
collected by the Remotely Operated Vehicle Tiburon
sample derived from
SAMEA118013055
sample name
0d11b710-f45e-4c9f-89a4-5961b070786e
scientific_name
Brevundimonas sp.
sequencing method
Pacbio Sequel II
specimen_id
QMOUL0000255
specimen_voucher
NOT_APPLICABLE
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
wsRidPisc1.Brevundimonas_sp_1
voucher institution url
https://ror.org/04v7hvq31