535639e5-166c-4351-8e97-8531b918fb61-asg-bin.173
Gammaproteobacteria bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-02-27
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
535639e5-166c-4351-8e97-8531b918fb61
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
WILLIAM GROSSMAN
collecting institution
MARINE BIOLOGICAL LABORATORY
collection date
2024-05-20
completeness score
99.09
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
5.18
environmental medium
adult sponge tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
41.63
geographic location (longitude)
-70.64
geographic location (region and locality)
Massachusettes | North Falmouth
habitat
collected under a bridge, ~2 ' of water, fast water moving through there during tides, 53F
host life stage
juvenile
host scientific name
Mycale fibrexilis
host sex
not provided
host taxid
86016
identified_by
WILLIAM GROSSMAN
identifier_affiliation
MARINE BIOLOGICAL LABORATORY
investigation type
metagenome-assembled genome
isolation_source
Sponge: Mycale fibrexilis
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
40
organism part
WHOLE ORGANISM
project name
ToL
sample derived from
SAMEA117780715
sample name
535639e5-166c-4351-8e97-8531b918fb61
scientific_name
Gammaproteobacteria bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000358
specimen_voucher
NOT COLLECTED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
odMycFibr1.Gammaproteobacteria_3