C06 sub-catchment, point 5
sediment metagenome
street sediment collected in C06 sub-catchment
ENA first public
2026-02-06
INSDC center name
Microbial ecology
INSDC status
public
Submitter Id
C06_UD5
broad-scale environmental context
urban road environment (SNOMED:262514009)
collection date
2019-02-02
depth
0
elevation
202
environmental medium
street sediment
geographic location (country and/or sea)
France
geographic location (latitude)
45.73047490
geographic location (longitude)
4.96157240
geographic location (region and locality)
Auvergne-Rhone-Alpes administrative region, Rhone department, Lyon metropolitan area, ZI Chassieu Mi-Plaine watershed
local environmental context
street environment (SNOMED:257710009)
pcr primers
ILMN-PTCF2 (GTGCCGYTRTGYGGCAAGA) and ILMN-PTCF2m (GTGCCCYTRTGYGGCAAGT); ILMN-PTCR2 (ATCAKYGCGGCGCGGTCRTA) and ILMN-PTCR2m (ATGAGBGCTGCCCTGTCRTA)
project name
PRJEB72369 (Urbamic 2023, street sediment metagenomes - Bacterial microbiomes of street sediments from industrial and commercial sub-catchments)
sample name
C06_UD5
scientific_name
sediment metagenome
target gene
Thiopurine S-methyltransferase (tpm)
target subfragment
200-235 bp, including the VPLCGK and YDRAAM conserved domains