caa2bdc7-9f27-48c5-8b99-244f41a22382-asg-MAGScoT_cleanbin_000013
Caldilineaceae bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-02-27
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
caa2bdc7-9f27-48c5-8b99-244f41a22382
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Andia Chaves Fonnegra
collecting institution
FLORIDA ATLANTIC UNIVERSITY
collection date
2024-02-29
completeness score
98.18
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.91
depth
14.3
environmental medium
adult sponge tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
26.16
geographic location (longitude)
-80.08
geographic location (region and locality)
Florida | Fort Lauderdale | BC2
habitat
coral reef
host life stage
adult
host scientific name
Ircinia felix
host sex
not applicable
host taxid
275432
identified_by
Andia Chaves Fonnegra
identifier_affiliation
FLORIDA ATLANTIC UNIVERSITY
investigation type
metagenome-assembled genome
isolation_source
Sponge: Ircinia felix
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
55
organism part
WHOLE ORGANISM
project name
ToL
relationship
unknown
sample derived from
SAMEA117781173
sample name
caa2bdc7-9f27-48c5-8b99-244f41a22382
scientific_name
Caldilineaceae bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000349
specimen_voucher
NOT COLLECTED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
odIrcFeli1.Caldilineaceae_3