Metagenome-assembled genome: MGYG000260477
Odoribacter sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic sample ERS475171 of study ERP005860.
ENA first public
2026-07-16
INSDC center name
EMG
INSDC status
public
Submitter Id
MGYG000260477
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
missing: third party data
binning parameters
missing: third party data
binning software
missing: third party data
broad-scale environmental context
human-associated habitat
broker name
EBI-EMG
collection date
2011
completeness score
90.86
completeness software
CheckM2_v1.1.0
contamination score
1.7
environmental medium
feces
geographic location (country and/or sea)
China
geographic location (latitude)
30.00000000
geographic location (longitude)
120.00000000
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Liver cirrhosis occurs as a consequence of many chronic liver diseases that are prevalent worldwide. Previous studies have shown an association between the gut microbiota and liver complications such as cirrhosis and other liver injuries. We therefore undertook a whole gut microbiome wide association study of stool samples from 98 liver cirrhosis patients and 83 healthy controls to characterise the faecal microbial communities and their functional composition. In total, we generated 860 Gb of high-quality sequence data and built a reference gene set for the liver cirrhosis cohort containing 2.69 million genes, 36.1% of which was not covered by previously published gene catalogues.
sample derived from
ERS475171
sample name
MGYG000260477
scientific_name
Odoribacter sp.
sequencing method
missing: third party data
taxonomic identity marker
multi-marker approach