b7e64017-226b-4aac-beac-0e83de6cf32f-asg-MAGScoT_cleanbin_000081
Dehalococcoidia bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-02-27
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
b7e64017-226b-4aac-beac-0e83de6cf32f
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Andia Chaves Fonnegra
collecting institution
FLORIDA ATLANTIC UNIVERSITY
collection date
2024-02-29
completeness score
97.69
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.0
depth
14.3
environmental medium
adult sponge tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
26.16
geographic location (longitude)
-80.08
geographic location (region and locality)
Florida | Fort Lauderdale | BC2
habitat
coral reef
host life stage
adult
host scientific name
Agelas tubulata
host sex
not applicable
host taxid
333315
identified_by
Andia Chaves Fonnegra
identifier_affiliation
FLORIDA ATLANTIC UNIVERSITY
investigation type
metagenome-assembled genome
isolation_source
Sponge: Agelas tubulata
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
50
organism part
WHOLE ORGANISM
project name
ASG
relationship
unknown
sample derived from
SAMEA117780969
sample name
b7e64017-226b-4aac-beac-0e83de6cf32f
scientific_name
Dehalococcoidia bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000345
specimen_voucher
NOT COLLECTED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
odAgeTubu1.Dehalococcoidia_24