Metagenome-Assembled Genome spire_mag_00634084 in SPIRE v01 classified as Mediterranea sp945879145
Mediterranea sp. (in: CFB group bacteria)
assembly software
megahit 1.2.9
GUNC version
GUNC v1.0.6
broad-scale environmental context
missing: third party data
collection date
missing: third party data
number of contigs
297
sample derived from
SAMN11097827
geographic location (longitude)
missing: third party data
binning parameters
tetramer and coverage
contamination score
0.20
GUNC clade separation score
0.3
taxonomic classification
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Mediterranea;s__Mediterranea sp945879145
linked to SPIRE study
https://spire.embl.de/spire/v1/study/149
completeness software
CheckM2 v0.1.3
contig N50
6261
linked to SPIRE sample
https://spire.embl.de/spire/v1/sample/18633
SPIRE genome cluster
https://spire.embl.de/spire/v1/cluster/spire_v1_095_000048767
geographic location (country and/or sea)
missing: third party data
binning software
metaBAT2 v2.12.1
linked to analysis project
ERP174060
organism
Mediterranea sp.
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
GUNC reference representation score
0.67
taxonomic identity marker
multi-marker approach
completeness score
58.88
environmental medium
missing: third party data
geographic location (latitude)
missing: third party data
scientific_name
Mediterranea sp.
taxonomic classification software
GTDBtk v2.3.2_r214
SPIRE genome id
https://spire.embl.de/spire/v1/genome/spire_mag_00634084
GUNC contamination score
0.08
local environmental context
missing: third party data
MAG coverage software
bwa mem
metagenomic source
metagenomes
project name
SPIRE v1: a Searchable Planetary-scale mIcrobiome REsource
derived from assembly
ERZ27232889
isolation_source
missing: third party data