Metagenome-assembled genome: MGYG000029116
Bacteroidales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic sample SRS019381 of study SRP002860.
ENA first public
2026-06-12
INSDC center name
EMG
INSDC status
public
Submitter Id
MGYG000029116
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
missing: third party data
binning parameters
missing: third party data
binning software
missing: third party data
broad-scale environmental context
human-associated habitat
broker name
EBI-EMG
collection date
missing: third party data
completeness score
81.16
completeness software
CheckM2_v1.1.0
contamination score
0.01
environmental medium
stool
geographic location (country and/or sea)
missing: third party data
geographic location (latitude)
missing: third party data
geographic location (longitude)
missing: third party data
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
This HMP production phase represents pyrosequencing of 16S rRNA genes amplified from multiple body sites across hundreds of human subjects. In combination with Clinical Production Phase I (48333), this dataset represents samples derived from 300 healthy subjects, of which 200 were sampled at two time points and 100 were sampled at three time points. Using default protocol v4.2 data for 16S window spanning V3-V5 was generated for all samples, with a second 16S window spanning V1-V3 generated for a majority of the samples. 16S rRNA sequencing is being used to characterize the complexity of microbial communities at individual body sites, and to determine whether there is a core microbiome at each site. Several body sites will be studied, including the gastrointestinal and female urogenital tracts, oral cavity, nasal and pharyngeal tract, and skin.
sample derived from
SRS019381
sample name
MGYG000029116
scientific_name
Bacteroidales bacterium
sequencing method
missing: third party data
taxonomic identity marker
multi-marker approach