4e600c2f-36c9-42fe-ba98-7bf1f9fe268c-asg-bin.977
Rhodospirillales bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-02-27
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
4e600c2f-36c9-42fe-ba98-7bf1f9fe268c
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
DASTOOL (version 1.1.5); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
KATHRIN BUSCH
collecting institution
GEOMAR
collection date
2018-08-08
completeness score
90.8
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
6.72
depth
330
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Germany
geographic location (latitude)
54.19
geographic location (longitude)
10.09
geographic location (region and locality)
Kiel | GEOMAR
habitat
continental shelf
host life stage
adult
host scientific name
Geodia phlegraei
host sex
not applicable
host taxid
521093
identified_by
HANS TORE RAPP
identifier_affiliation
UiB, Norway
investigation type
metagenome-assembled genome
isolation_source
Sponge: Geodia phlegraei
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
37
organism part
WHOLE ORGANISM
project name
ASG
relationship
beneficial
sample derived from
SAMEA117780466
sample name
4e600c2f-36c9-42fe-ba98-7bf1f9fe268c
scientific_name
Rhodospirillales bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000289
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
odGeoPhle1.Rhodospirillales_2