Salade_Interrang_metabat2.995
soil metagenome
Soil sample between two rows of salad crops in a tunnel farming setup
ENA first public
2025-10-30
INSDC center name
INRAe
INSDC status
public
Submitter Id
metabat2.995
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
MEGAHIT;1.2.9 ';--presets meta-large', MetaMDBG;0.3;default parameters
binning parameters
Bins with 100% completeness and ≤5% contamination were considered complete MAGs. Bins meeting the ≥90% completeness criteria were labelled high-quality (HQ) MAGs. In comparison, those comprising between ≤90% and ≥50% completeness were considered medium-quality (MQ) MAGs. Bins below these thresholds were considered low-quality (LQ) MAGs, while those over 10% of contamination were classified as 'contaminated bins'.
binning software
MetaBAT2 v2.15, SemiBin v1.5.0, DAStool v1.1.6
broad-scale environmental context
Mediterranean biome (ENVO 01001833)
collection date
2020-02-02
completeness score
93.12
completeness software
CheckM2 v1.0.1
contamination score
7.32
environmental medium
cultivated environment (ENVO 01000311)
geographic location (country and/or sea)
France
geographic location (latitude)
43.65345
geographic location (longitude)
5.26372
isolation_source
soil sample between two rows of salad crops in a tunnel farming setup.
local environmental context
Hillside (ENVO 01000333) – cropland ecosystem (ENVO 01001244)
metagenomic source
soil metagenome
project name
Accurate MAG reconstruction from complex soil microbiome through combined short- and HiFi long-reads metagenomics
sample derived from
ERS26797009
sample name
metabat2.995
scientific_name
soil metagenome
taxonomic identity marker
16S gene