stool
Penicillium steckii
collection_date
2021-10-20
env_broad_scale
South-East Asian Region (SEAR)
env_local_scale
Breast cancer patient
env_medium
Haelthcare|Facility|oncology department
geo_loc_name
United Arab Emirates:Al Ain
host
Homo sapiens
lat_lon
24.2075 N 55.7447 E
isolate
cancer patients
cultivar
not applicable
ecotype
not applicable
strain
Fungi
isol_growth_condt
DNA isolated from stool sample using fecal power kit https://www.qiagen.com/us/products/dscovery-and-translational-resaerch/dna-purification/genimic-dna/qiaamp-powerfecal-pro-dna-kit
biosample_accession
G11A622_4E181
library_id
ITS2_Gut_Cancer_208
title
ITS2 amplicon sequencing of human gut mycobiome in cancer patients
library_strategy
AMPLICON
library_source
METAGENOMIC
library_selection
PCR
library_layout
PAIRED
platform
DNBSEQ
instrument_model
DNBSEQ-G400
design_description
ITS2 rRNA gene amplicons were generated from stool DNA using fungal-specific primers targeting the ITS2 region. Amplicons were PCR-amplified, indexed, and sequenced on DNBSEQ platform to characterize the gut mycobiome composition in cancer patients groups
filetype
fasta
filename
Sequence_its2_622.fasta
BioSampleModel
MIMARKS.specimen
BioSampleModel
MIGS/MIMS/MIMARKS.human-gut