Metagenome-assembled genome: SRR6915171_bin_14606
Bacteroides ovatus
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR6915171 of study SRP136711.
ENA first public
2025-12-07
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR6915171_bin_14606
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.15.5
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v2.0.0
broad-scale environmental context
human
broker name
EBI-EMG
collection date
2016-01-11
completeness score
59.12
completeness software
CheckM2_v1.0.1
contamination score
1.74
environmental medium
intestine
geographic location (country and/or sea)
Italy
geographic location (latitude)
45.41402800
geographic location (longitude)
9.20826800
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
digestive system
metagenomic source
human gut metagenome
project name
We used state-of-the-art whole-metagenome shotgun sequencing analysis methods to uniformly quantify taxonomic and functional abundance in fecal CRC metagenomes from 140 participants recruited in two new Italian cohorts.
sample derived from
SAMN08813972
sample name
SRR6915171_bin_14606
scientific_name
Bacteroides ovatus
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach