Metagenome-assembled genome: SRR16095332_metabat2_14
uncultured Variovorax sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR16095332 of study SRP339051.
ENA first public
2025-08-07
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR16095332_metabat2_14
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.15.5
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v1.0.0
broad-scale environmental context
soil
broker name
EBI-EMG
collection date
2020-07-23
completeness score
73.63
completeness software
CheckM2_v1.0.1
contamination score
1.85
environmental medium
maize
geographic location (country and/or sea)
not provided
geographic location (latitude)
40.08000000
geographic location (longitude)
116.17000000
investigation type
metagenome-assembled genome
isolation_source
rhizosphere metagenome
local environmental context
rhizosphere
metagenomic source
rhizosphere metagenome
project name
Understanding microbial functional response to bulk soil and rhizosphere
sample derived from
SAMN20157253
sample name
SRR16095332_metabat2_14
scientific_name
uncultured Variovorax sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach