ABX-CJ-PARS.metabat2.bin.8
Candidatus Avilachnospira sp.
MAG recovered from fecal samples of Control group marmoset
16S recovery software
Barrnap;0.9;default parameters
16s recovered
No
ENA first public
2026-06-29
INSDC center name
UNIVERSITY OF NEBRASKA
INSDC status
public
MAG coverage software
Bowtie2
Submitter Id
ABX-CJ-PARS.metabat2.bin.8
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;4.0.0;Co-assembled metagenome, default parameters otherwise
binning parameters
coverage and kmer
binning software
MaxBin2,MetaBAT2,CONCOCT,VAMB,SemiBin2,COMEBin,DASTool
broad-scale environmental context
research facility
collection date
2021
completeness score
96.18
completeness software
Checkm2
contamination score
0.75
environmental medium
feces
feature prediction
Prodigal;2.6.3;default parameters
geographic location (country and/or sea)
USA
geographic location (latitude)
41.2579966
geographic location (longitude)
-96.0085381
isolation_source
common marmoset gut metagenome
local environmental context
intestine environment
metagenomic source
primate metagenome
number of standard tRNAs extracted
25
project name
Functional profiling of the marmoset gut metagenome
reassembly post binning
No
reference database(s)
KEGG,CAMPER,CANT-HYD,FeGenie,MEROPS,VOGDB,Pfam,dbCAN;All databases were downloaded via the DRAM2 Globus (UUID: 97ed64b9-dea0-4eb5-a7e0-0b50ac94e889) on 02/2025.
sample derived from
ABX-CJ-PARS-14,ABX-CJ-PARS-29,ABX-CJ-PARS-43,ABX-CJ-PARS-56
sample name
ABX-CJ-PARS.metabat2.bin.8
scientific_name
Candidatus Avilachnospira sp.
similarity search method
DRAM;1.5.0;reference databases listed in reference database column, default parameters otherwise
tRNA extraction software
tRNAscan-SE;2.0.12;default parameters
taxonomic classification
GTDB-tk (v2.4.0);GTDB (r220);species rank classification, default parameters
taxonomic identity marker
multi-marker approach