Alcaligenes nematophilus
Alcaligenes sp. str. OYA S34 is a candidate plant growth-promoting rhizobacterium (PGPR). Libraries were sequenced on an Illumina NovaSeq X Plus with 2x151 bp paired-end reads. The draft genome analysis of Alcaligenes sp. str. OYA S34 has 28 contigs with 4,173,127 bp in length, N50 of 563,255 bp, L50 of 2 bp and a GC content of 56.58. Genome annotation predicted 3,874 protein-coding sequences, 5 rRNA genes, and 55 tRNA genes. No plasmids or additional replicons were detected. The assembly and annotation were generated using Unicycler v0.4.8 and the RAST tool kit (RASTtk) pipelines. The genome enables identification of genetic determinants underlying plant growth-promoting traits and provides a resource for comparative genomics and development as a PGPR candidate
strain
OYA S34
chem_administration
NA
collection_date
2024-05-20
env_broad_scale
terrestrial biome
env_local_scale
agricultural soil
env_medium
rhizosphere soil
food_source
NA
geo_loc_name
Nigeria: Ekiti state, Oye-Ekiti
host_age
10 weeks
host_common_name
pepper
host_genotype
NA
host_height
50cm
host_length
NA
host_life_stage
Vegetative
host_phenotype
NA
host_tot_mass
NA
isol_growth_condt
https://doi.org/10.1007/s00284-020-02303-w
lat_lon
7.776695 N 5.312083 E
microbial_biomass
NA
microbial_biomass_meth
NA
num_replicons
1
ref_biomaterial
This study; isolate obtained from rhizosphere soil of pepper (Capsicum annuum)
samp_store_dur
24 HOURS
samp_store_loc
Laboratory Freezer
sieving
2mm sieve
soil_type
Loamy soil
soil_type_meth
Field observation
store_cond
-10C
temp
30C
isolation_source
Rhizosphere soil of pepper (Capsicum annuum)
neg_cont_type
Sterile NA medium
pos_cont_type
Bacillus subtilis as growth control.
Incubation Temperature
30C
Isolation Medium
Nutrient Agar
Cultural Morphology
Gray color, Flat elevation, and smooth surface
Depth of Rhizosphere Sample
20mm
BioSampleModel
MIGS.ba
BioSampleModel
MIGS/MIMS/MIMARKS.agriculture