Salade_Interrang_semibin2_154
soil metagenome
Soil sample between two rows of salad crops in a tunnel farming setup
ENA first public
2025-10-30
INSDC center name
INRAe
INSDC status
public
Submitter Id
semibin2_154
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
MEGAHIT;1.2.9 ';--presets meta-large', MetaMDBG;0.3;default parameters
binning parameters
Bins with 100% completeness and ≤5% contamination were considered complete MAGs. Bins meeting the ≥90% completeness criteria were labelled high-quality (HQ) MAGs. In comparison, those comprising between ≤90% and ≥50% completeness were considered medium-quality (MQ) MAGs. Bins below these thresholds were considered low-quality (LQ) MAGs, while those over 10% of contamination were classified as 'contaminated bins'.
binning software
MetaBAT2 v2.15, SemiBin v1.5.0, DAStool v1.1.6
broad-scale environmental context
Mediterranean biome (ENVO 01001833)
collection date
2020-02-02
completeness score
84.65
completeness software
CheckM2 v1.0.1
contamination score
0.08
environmental medium
cultivated environment (ENVO 01000311)
geographic location (country and/or sea)
France
geographic location (latitude)
43.65345
geographic location (longitude)
5.26372
isolation_source
soil sample between two rows of salad crops in a tunnel farming setup.
local environmental context
Hillside (ENVO 01000333) – cropland ecosystem (ENVO 01001244)
metagenomic source
soil metagenome
project name
Accurate MAG reconstruction from complex soil microbiome through combined short- and HiFi long-reads metagenomics
sample derived from
ERS26797009
sample name
semibin2_154
scientific_name
soil metagenome
taxonomic identity marker
16S gene