fer_NaCl150mM_RNASeq_1
Solanum lycopersicum
Protocols: Root tissues were collected from wild-type and fer tomato seedlings grown under control or 150 mM NaCl treatment. Samples were harvested after 5 days of salt treatment, with three biological replicates per condition. Tomato seedlings were grown under controlled greenhouse conditions with a 16 h light/8 h dark photoperiod at 30°C during the light period and 25°C during the dark period. Plants were maintained in 1/4-strength Hoagland's medium before treatment. At 3–4 weeks after sowing, seedlings were assigned to control or progressive salt treatment culminating in 150 mM NaCl. Control plants were maintained in 1/4-strength Hoagland's medium. Seedlings were maintained under control conditions or subjected to progressive salt treatment culminating in 150 mM NaCl. Root tissues were harvested after 5 days of salt treatment. Control plants were maintained in 1/4-strength Hoagland's medium. Total RNA was extracted from tomato root tissues using the RNAprep Pure Plant Kit according to the manufacturer's instructions. RNA quality was assessed before library construction. RNA-seq libraries were constructed from total RNA using a standard mRNA-seq library preparation workflow.
ENA first public
2026-06-13
INSDC center name
Department of Horticulture, Zhejiang University
INSDC status
public
Submitter Id
E-MTAB-17154:fer_NaCl150mM_RNASeq_1
age
3
broker name
ArrayExpress
collection date
not collected
common name
tomato
cultivar
Condine Red
developmental stage
seedling development stage
genotype
fer
geographic location (country and/or sea)
not collected
isolate
not applicable
organism part
root
sample name
E-MTAB-17154:fer_NaCl150mM_RNASeq_1
scientific_name
Solanum lycopersicum
stimulus
150 mM NaCl