77eaa673-26bb-4ca6-a49c-81d920cb99ed-asg-bin.33
Gammaproteobacteria bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
No
ENA first public
2025-03-01
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
77eaa673-26bb-4ca6-a49c-81d920cb99ed
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
KATHRIN BUSCH
collecting institution
GEOMAR
collection date
2017-02-08
completeness score
14.11
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.0
depth
793
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Germany
geographic location (latitude)
54.19
geographic location (longitude)
10.09
geographic location (region and locality)
Kiel | GEOMAR
habitat
seamount
host life stage
adult
host scientific name
Corbitella plagiariorum
host sex
not applicable
host taxid
3014155
identified_by
SADIE MILLS
identifier_affiliation
NIWA, New Zealand
investigation type
metagenome-assembled genome
isolation_source
Sponge: Corbitella plagiariorum
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
5
organism part
WHOLE ORGANISM
project name
ToL
relationship
unknown
sample derived from
SAMEA117786373
sample name
77eaa673-26bb-4ca6-a49c-81d920cb99ed
scientific_name
Gammaproteobacteria bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000302
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
ohCorPlag1.Gammaproteobacteria_3