Metagenome-assembled genome: SRR32675078_binner13_Refined_4
Fusobacterium periodonticum
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR32675078 of study SRP493350.
ENA first public
2025-10-13
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR32675078_binner13_Refined_4
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.15.5
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v1.2.0
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2021
completeness score
95.52
completeness software
CheckM2_v1.0.1
contamination score
0.43
environmental medium
saliva
geographic location (country and/or sea)
Spain
geographic location (latitude)
41.98160000
geographic location (longitude)
2.82360000
investigation type
metagenome-assembled genome
isolation_source
human oral metagenome
local environmental context
oral cavity
metagenomic source
human oral metagenome
project name
The goal is to assess the microbial compositional changes of the oral microbiota in pancreatic diseases (PDAC &amp CP) compared to healthy individuals.
sample derived from
SAMN40260225
sample name
SRR32675078_binner13_Refined_4
scientific_name
Fusobacterium periodonticum
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach