Plant samples from Lablab purpureus cultivars for transcriptomic analysis
Lablab purpureus
This BioSample represents pooled publicly available RNA-Seq datasets from multiple tissues (leaf, stem, flower, root, and pod) of Lablab purpureus cultivars for transcriptomic analysis. The primary reference genome assembly (GCA_051403735.1) and primary RNA-Seq evidences were obtained from BioProject PRJNA1260078 and BioSample SAMN48386564, published at NCBI by the Institute of Virology and Biotechnology, China. Additional transcript evidences from Lablab purpureus cultivars were sourced from publicly available NCBI BioProjects (PRJNA474418, PRJNA1008422, PRJNA273585, PRJNA601532, and PRJNA1153959) and mapped to the reference genome assembly (GCA_051403735.1) using RNA Star tool v2.7.11b. The mapped reads were then assembled into denovo transcript assembly and merged into a single GTF file using StringTie v 2.2.3 and those assembled transcripts were used as additional transcript evidence in Funannotate v1.8.15 for predicting gene models and functional annotation. These processed sequences were used for structural and functional genome annotation of Lablab purpureus complete genome assembly (GCA_051403735.1). This study will help researchers in gene-based expression or association studies for improving valuable genetic traits in Lablab purpureus or similar crops supporting plant breeding and crop improvement efforts.
cultivar
Linghu
dev_stage
vegetative and reproductive
collection_date
2024-10-01
geo_loc_name
China: Hangzhou
tissue
leaf, stem, flower, root, pod
Note
collection date and geographic location are for primary biosample, however, several biosamples of Lablab purpureus were used for transcriptomic analysis
BioSampleModel
Plant