bbac727b-a16f-4dd7-a2ef-33ccdd985e2c-asg-MAGScoT_cleanbin_000009
Larkinella sp.
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-03-01
GAL
University of British Columbia
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
bbac727b-a16f-4dd7-a2ef-33ccdd985e2c
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Estelle Kilias
collecting institution
University of Oxford
collection date
2023-01-25
completeness score
90.24
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.6
culture_or_strain_id
PB034004A
environmental medium
ciliate culture
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
51.76
geographic location (longitude)
-1.25
geographic location (region and locality)
Oxford|Zoology Department
habitat
Freshwater
host life stage
not applicable
host scientific name
Paramecium bursaria
host sex
not applicable
host taxid
74790
identified_by
NOT COLLECTED
identifier_affiliation
National BioResource project
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Paramecium bursaria
local environmental context
freshwater biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
41
organism part
WHOLE ORGANISM
original collection location
Japan|Hirosaki
project name
ASG
sample collection method
Filtered on 11um nylon filter and washed with NCL autoclaved; concentrated from 50ml to 1.5ml
sample derived from
SAMEA117786530
sample name
bbac727b-a16f-4dd7-a2ef-33ccdd985e2c
scientific_name
Larkinella sp.
sequencing method
Pacbio Sequel II
specimen voucher url
http://nbrpcms.nig.ac.jp/paramecium/wp-content/themes/paramecium/data/strain ha1g.pdf
specimen_id
UOBC0000006
specimen_voucher
HA1
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
piParBurs4.Larkinella_sp_1