fa82b63a-ca30-490b-9e94-db8e849ae5d5-asg-MAGScoT_cleanbin_000006
Zavarzinia sp.
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-03-01
GAL
University of British Columbia
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
fa82b63a-ca30-490b-9e94-db8e849ae5d5
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Estelle Kilias
collecting institution
University of Oxford
collection date
2023-01-25
completeness score
83.81
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
4.82
culture_or_strain_id
PB034004A
environmental medium
ciliate culture
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
51.76
geographic location (longitude)
-1.25
geographic location (region and locality)
Oxford|Zoology Department
habitat
Freshwater
host life stage
not applicable
host scientific name
Paramecium bursaria
host sex
not applicable
host taxid
74790
identified_by
NOT COLLECTED
identifier_affiliation
National BioResource project
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Paramecium bursaria
local environmental context
freshwater biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
51
organism part
WHOLE ORGANISM
original collection location
Japan|Hirosaki
project name
ASG
sample collection method
Filtered on 11um nylon filter and washed with NCL autoclaved; concentrated from 50ml to 1.5ml
sample derived from
SAMEA117786530
sample name
fa82b63a-ca30-490b-9e94-db8e849ae5d5
scientific_name
Zavarzinia sp.
sequencing method
Pacbio Sequel II
specimen voucher url
http://nbrpcms.nig.ac.jp/paramecium/wp-content/themes/paramecium/data/strain ha1g.pdf
specimen_id
UOBC0000006
specimen_voucher
HA1
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
piParBurs4.Zavarzinia_sp_1