6e4e6a3a-37b4-481a-911d-38f51d453110-asg-MAGScoT_cleanbin_000012
Caldilineaceae bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-03-01
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
6e4e6a3a-37b4-481a-911d-38f51d453110
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
KATHRIN BUSCH
collecting institution
GEOMAR
collection date
2017-07-22
completeness score
94.55
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.0
depth
262
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Germany
geographic location (latitude)
54.19
geographic location (longitude)
10.09
geographic location (region and locality)
Kiel | GEOMAR
habitat
reef
host life stage
adult
host scientific name
Plakortis simplex
host sex
not applicable
host taxid
252963
identified_by
HANS TORE RAPP
identifier_affiliation
UiB, Norway
investigation type
metagenome-assembled genome
isolation_source
Sponge: Plakortis simplex
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
49
organism part
WHOLE ORGANISM
project name
ToL
relationship
beneficial
sample derived from
SAMEA117786390
sample name
6e4e6a3a-37b4-481a-911d-38f51d453110
scientific_name
Caldilineaceae bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000296
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
ooPlaSimp1.Caldilineaceae_1