Metagenome-assembled genome: SRR27205906_binner12_Refined_1
Rothia mucilaginosa
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR27205906 of study SRP477941.
ENA first public
2025-10-13
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR27205906_binner12_Refined_1
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.15.5
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v1.2.0
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2023-07-08
completeness score
99.98
completeness software
CheckM2_v1.0.1
contamination score
3.2
environmental medium
saliva
geographic location (country and/or sea)
Finland
geographic location (latitude)
64.96310000
geographic location (longitude)
26.22840000
investigation type
metagenome-assembled genome
isolation_source
human oral metagenome
local environmental context
oral cavity
metagenomic source
human oral metagenome
project name
Shotgun analysis of saliva derived from Finnish children
sample derived from
SAMN38838728
sample name
SRR27205906_binner12_Refined_1
scientific_name
Rothia mucilaginosa
sequencing method
Illumina MiSeq
taxonomic identity marker
multi-marker approach