Arabidopsis thaliana
ENA first public
2026-02-11
INSDC status
public
age
2 weeks old
biological material ID
ku70_R3
biological material altitude
112m
biological material coordinates uncertainty
not applicable
biological material geographic location
Germany
biological material latitude
51,816
biological material longitude
11,283
biological material ploidy
diploid
checklist
BSDC00002
collection date
2024-12-23
genus
Arabidopsis
geographic location (country and/or sea)
Germany
growth facility
growth chamber
library type
RNAseq
material source altitude
112m
material source description
not applicable
material source geographic location
Germany
material source latitude
51,816
material source longitude
11,283
plant anatomical entity
Seedling
plant structure development stage
seedling development stage
project name
Arabidopsis Epichrom
sample ID
IPK_LIMS:3400007
sample description
To evaluate the effect of chromosome fusions on gene expression, we performed RNA-seq analysis of the F8 and T8 lines and compared them with the respective wild-type plants, Col-0 and Ku70. For this, seeds were surface-sterilized and grown on MS medium under controlled conditions in a growth chamber at 22 °C with a 16 h light / 8 h dark photoperiod for two weeks. Whole seedlings were then harvested and ground in liquid nitrogen. A total of 100 mg of ground tissue was used for RNA extraction.
sample name
ku70_R3
species
thaliana