Staphylococcus capitis
This sample represents a binned metagenome assembled from the metagenomic runs SRR1620993, SRR3181936, SRR3181937, SRR3181938, SRR3182116, SRR3182117, SRR3182118 of study SRP002480.
INSDC center name
NIH/NHGRI
Submitter Id
SAMPLE_5_bin.4
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes_v3.13.0
binning parameters
--maxbin2 --metabat2 --concoct
binning software
metaWRAP_v1.2.1
broad-scale environmental context
human skin
collection date
not applicable
completeness score
99.06
completeness software
CheckM_v1.1.2
contamination score
0.63
environmental medium
Skin wash
geographic location (country and/or sea)
USA
geographic location (latitude)
not applicable
geographic location (longitude)
not applicable
investigation type
metagenome-assembled genome
isolation_source
human skin metagenome
local environmental context
Ea-R
metagenomic source
human skin metagenome
project name
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
sample derived from
ERS25060618
sample name
SAMPLE_5_bin.4
scientific_name
Staphylococcus capitis
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach