Endozoicomonas sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2025-04-07
GAL
University of Derby
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
d02949b9-6f41-4675-acba-c16c0c6ff2bf
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Santiago Herrera
collecting institution
Lehigh University
collection date
2022-07-01
completeness score
91.76
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
2.88
depth
89.6
environmental medium
adult coral tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
28.81
geographic location (longitude)
-87.27
geographic location (region and locality)
Louisiana
habitat
hardbottom
host life stage
adult
host scientific name
Madrepora sp. 1 SH 2022
host sex
not collected
host taxid
2982801
identified_by
Santiago Herrera
identifier_affiliation
Lehigh University
investigation type
metagenome-assembled genome
isolation_source
Coral: Madrepora sp. 1 SH 2022
local environmental context
marine biome
metagenomic source
coral metagenome
number of standard tRNAs extracted
73
organism part
WHOLE ORGANISM
original collection date
2022-07-01
original collection location
USA|Louisiana
original geographic location (latitude)
28.805273
original geographic location (longitude)
-87.265063
project name
ASG
proxy voucher
NOT PROVIDED
proxy voucher url
https://collections.nmnh.si.edu/search/iz/
sample collection device or method
ROV
sample derived from
SAMEA117984118
sample name
d02949b9-6f41-4675-acba-c16c0c6ff2bf
scientific_name
Endozoicomonas sp.
sequencing method
Pacbio Sequel II
specimen voucher url
https://collections.nmnh.si.edu/search/iz/
specimen_id
UDUK1666284
specimen_voucher
USNM:1666284
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
jaMadSpea1.Endozoicomonas_sp_1
voucher institution url
https://ror.org/00cz47042