Alistipes sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic sample ERS554253 of study ERP007090.
ENA first public
2026-07-08
INSDC center name
EMG
INSDC status
public
Submitter Id
MGYG000228790
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
missing: third party data
binning parameters
missing: third party data
binning software
missing: third party data
broad-scale environmental context
human-associated habitat
broker name
EBI-EMG
collection date
2013-05-23
completeness score
83.1
completeness software
CheckM2_v1.1.0
contamination score
0.92
environmental medium
feces
geographic location (country and/or sea)
Sweden
geographic location (latitude)
63.81857700
geographic location (longitude)
20.29661100
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
We used untargeted metagenomic Illumina sequencing to study fecal samples of 35 Swedish healthcare students, taken before and after embarking on a student exchange program to the Indian peninsula or central Africa. The students were not taking antibiotics between sampling points. Antibiotic resistance gene frequencies were investigated in all samples.
sample derived from
ERS554253
sample name
MGYG000228790
scientific_name
Alistipes sp.
sequencing method
missing: third party data
taxonomic identity marker
multi-marker approach