uncultured Agrobacterium sp.
This sample represents a binned metagenome assembled from the metagenomic runs SRR1632481, SRR1632482, SRR1632483, SRR1632484, SRR3184875, SRR3184876, SRR3184930, SRR3184931, SRR3184932, SRR3184933, SRR3184934, SRR3184935, SRR3184936, SRR3184937, SRR3184938 of study SRP002480.
INSDC center name
NIH/NHGRI
Submitter Id
SAMPLE_166_bin.15
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes_v3.13.0
binning parameters
--maxbin2 --metabat2 --concoct
binning software
metaWRAP_v1.2.1
broad-scale environmental context
human skin
collection date
not applicable
completeness score
98.21
completeness software
CheckM_v1.1.2
contamination score
1.99
environmental medium
Skin swab
geographic location (country and/or sea)
USA
geographic location (latitude)
not applicable
geographic location (longitude)
not applicable
investigation type
metagenome-assembled genome
isolation_source
human skin metagenome
local environmental context
Hp-R
metagenomic source
human skin metagenome
project name
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
sample derived from
ERS25060500
sample name
SAMPLE_166_bin.15
scientific_name
uncultured Agrobacterium sp.
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach