Spirochaetia bacterium
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2025-04-07
GAL
Nova Southeastern University
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
f8dc601c-fc48-4767-9c06-4a3965c49648
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Michael Middlebrooks
collecting institution
University of Tampa
collection date
2024-01-19
completeness score
99.2
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.0
depth
0.99
environmental medium
adult chlorophyte tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
27.95
geographic location (longitude)
-82.47
geographic location (region and locality)
Florida | Tampa | University of Tampa
habitat
Taken from aquarium in lab, but original habitat is a seagrass/macroalgal bed
host life stage
vegetative structure
host scientific name
Penicillus lamourouxii
host sex
not collected
host taxid
381418
identified_by
Michael Middlebrooks
identifier_affiliation
University of Tampa
investigation type
metagenome-assembled genome
isolation_source
Chlorophyte: Penicillus lamourouxii
local environmental context
marine biome
metagenomic source
algae metagenome
number of standard tRNAs extracted
45
organism part
WHOLE ORGANISM
project name
ToL
sample derived from
SAMEA117984261
sample name
f8dc601c-fc48-4767-9c06-4a3965c49648
scientific_name
Spirochaetia bacterium
sequencing method
Pacbio Sequel II
specimen_id
NSU0027201
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
ucPenLamo1.Spirochaetia_1