Staphylococcus capitis
This sample represents a binned metagenome assembled from the metagenomic runs SRR1631525, SRR1631526, SRR1631527, SRR1631528, SRR1631529, SRR1631530, SRR3185134, SRR3185135, SRR3185136, SRR3185137, SRR3185138, SRR3186861, SRR3186862, SRR3186863, SRR3186864, SRR3186865 of study SRP002480.
INSDC center name
NIH/NHGRI
Submitter Id
SAMPLE_153_bin.3
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes_v3.13.0
binning parameters
--maxbin2 --metabat2 --concoct
binning software
metaWRAP_v1.2.1
broad-scale environmental context
human skin
collection date
not applicable
completeness score
69.21
completeness software
CheckM_v1.1.2
contamination score
4.05
environmental medium
Skin swab
geographic location (country and/or sea)
USA
geographic location (latitude)
not applicable
geographic location (longitude)
not applicable
investigation type
metagenome-assembled genome
isolation_source
human skin metagenome
local environmental context
Oc-R,Oc-C
metagenomic source
human skin metagenome
project name
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
sample derived from
ERS25060489
sample name
SAMPLE_153_bin.3
scientific_name
Staphylococcus capitis
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach