uncultured Methanobrevibacter sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic sample SRS1820340 of study SRP093965.
ENA first public
2026-07-08
INSDC center name
EMG
INSDC status
public
Submitter Id
MGYG000213456
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
missing: third party data
binning parameters
missing: third party data
binning software
missing: third party data
broad-scale environmental context
hospital
broker name
EBI-EMG
collection date
2013-05-01
completeness score
68.53
completeness software
CheckM2_v1.1.0
contamination score
0.54
environmental medium
human fecal sample
geographic location (country and/or sea)
USA
geographic location (latitude)
39.28846263
geographic location (longitude)
-76.62594594
investigation type
metagenome-assembled genome
isolation_source
human gut metagenome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
This project takes advantage of challenge studies with an important human pathogen, Vibrio cholera, the etiological agent of cholera, which causes severe diarrhea in developed countries. The goal of this study is to understand the dynamic interactions between the host, pathogen and microbiota and how these interactions play a role in determining the pathogen population in the host, the development of an immune response, and the diversity and ecology of the microbiota. The project uses a combination of genomic, transcriptomic and metagenomic technologies together with human challenge studies to generate new insights into the interaction of host, pathogen, and microbiota.
sample derived from
SRS1820340
sample name
MGYG000213456
scientific_name
uncultured Methanobrevibacter sp.
sequencing method
missing: third party data
taxonomic identity marker
multi-marker approach