uncultured Propionibacteriaceae bacterium
This sample represents a binned metagenome assembled from the metagenomic run SRR1950780 of study SRP056821.
INSDC center name
NIH/NHGRI
Submitter Id
SAMPLE_1672_bin.1
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes_v3.13.0
binning parameters
--maxbin2 --metabat2 --concoct
binning software
metaWRAP_v1.2.1
broad-scale environmental context
human skin
collection date
not applicable
completeness score
94.65
completeness software
CheckM_v1.1.2
contamination score
0.83
environmental medium
missing: third party data
geographic location (country and/or sea)
not applicable
geographic location (latitude)
missing: third party data
geographic location (longitude)
missing: third party data
investigation type
metagenome-assembled genome
isolation_source
human skin metagenome
local environmental context
missing: third party data
metagenomic source
human skin metagenome
project name
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
sample derived from
SRS892014
sample name
SAMPLE_1672_bin.1
scientific_name
uncultured Propionibacteriaceae bacterium
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach