sediment metagenome
collection_date
2023-04-12
depth
0.08
elev
-5
env_broad_scale
temperate marginal sea biome [ENVO_01000856]
env_local_scale
microbial community [PCO:1000004]
env_medium
shallow marine sediment [ENVO:03000034]
geo_loc_name
Germany
lat_lon
54.14 N 11.84 E
samp_mat_process
Sediment collected from chamber and stored at -80 degrees centigrade
taxon_id
412755
sample_description
Sediment from a mesh chamber spiked with 250g antifouling paint particles per square meter sediment (medium experimental dose), incubated in Baltic Sea coastal marine sediment for 60 days. Extraction replicate R2 from within chamber C17
sequencing_platform
ILLUMINA
instrument_model
Illumina MiSeq
library_strategy
AMPLICON
library_source
METAGENOMIC
library_selection
PCR
library_layout
paired
nominal_length
290
target_gene
16S rRNA
target_subfragment
V4
pcr_primers
FWD:GTGCCAGCMGCCGCGGTAA REV:GGACTACHVGGGTWTCTAAT
forward_read_file_name
Medium_C17_R2_clip_fr_R1.fastq.gz
forward_read_file_checksum
f70d844e8c217cbb238da70539f851d6
reverse_read_file_name
Medium_C17_R2_clip_fr_R2.fastq.gz
reverse_read_file_checksum
ae10e2d51ae975900f9c5e66998b63d1
checksum_method
MD5
investigation_type
miens-survey
environmental_package
sediment
geographic_location_(latitude)
541.456
geographic_location_(longitude)
118.432
geographic_location_(depth)
0.08
geographic_location_(elevation)
-5
total_depth_of_water_column
5
environmental_sample
FALSE
nucl_acid_ext
DNeasy PowerSoil Pro Kit (250), Qiagen, Cat. No. / ID: 47016
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.sediment