sediment metagenome
collection_date
2023-05-04
depth
0.1
elev
-5
env_broad_scale
temperate marginal sea biome [ENVO_01000856]
env_local_scale
microbial community [PCO:1000004]
env_medium
shallow marine sediment [ENVO:03000034]
geo_loc_name
Germany
lat_lon
54.16 N 11.94 E
samp_mat_process
Sediment stored at -80 degrees centigrade
taxon_id
412755
sample_description
Sediment microbiome sample taken from Baltic Sea coastline using Van Veen sediment grab. Replicates refer to indiviual grabs (3 per site). Replicate 1 at Site L (Nienhagen)
sequencing_platform
ILLUMINA
instrument_model
Illumina MiSeq
library_strategy
AMPLICON
library_source
METAGENOMIC
library_selection
PCR
library_layout
paired
nominal_length
290
target_gene
16S rRNA
target_subfragment
V4
pcr_primers
FWD:GTGCCAGCMGCCGCGGTAA REV:GGACTACHVGGGTWTCTAAT
forward_read_file_name
SiteL_R1_clip_fr_R1.fastq.gz
forward_read_file_checksum
4cac4c2b1f8bc560b5bf1f956fc92f45
reverse_read_file_name
SiteL_R1_clip_fr_R2.fastq.gz
reverse_read_file_checksum
7568231c1694256697c86bb7bb4f4807
checksum_method
MD5
investigation_type
miens-survey
environmental_package
sediment
geographic_location_(latitude)
541.694
geographic_location_(longitude)
119.482
geographic_location_(depth)
0.1
geographic_location_(elevation)
-7
total_depth_of_water_column
7
environmental_sample
TRUE
nucl_acid_ext
DNeasy PowerSoil Pro Kit (250), Qiagen, Cat. No. / ID: 47016
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.sediment