Novosphingobium clariflavum
This sample represents a binned metagenome assembled from the metagenomic runs SRR1632785, SRR1632786, SRR1632787, SRR1632788, SRR3184858, SRR3184859, SRR3184860, SRR3191707, SRR3191708, SRR3191709, SRR3191710, SRR3191711, SRR3191712, SRR3191713, SRR3191714, SRR3191715 of study SRP002480.
INSDC center name
NIH/NHGRI
Submitter Id
SAMPLE_168_bin.4
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes_v3.13.0
binning parameters
--maxbin2 --metabat2 --concoct
binning software
metaWRAP_v1.2.1
broad-scale environmental context
human skin
collection date
not applicable
completeness score
52.25
completeness software
CheckM_v1.1.2
contamination score
0.8
environmental medium
Skin swab
geographic location (country and/or sea)
USA
geographic location (latitude)
not applicable
geographic location (longitude)
not applicable
investigation type
metagenome-assembled genome
isolation_source
human skin metagenome
local environmental context
Id-L,Id-R
metagenomic source
human skin metagenome
project name
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
sample derived from
ERS25060502
sample name
SAMPLE_168_bin.4
scientific_name
Novosphingobium clariflavum
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach