[Clostridium] scindens
assembly software
megahit 1.2.9
GUNC version
GUNC v1.0.6
broad-scale environmental context
missing: third party data
collection date
missing: third party data
number of contigs
398
sample derived from
SAMN02675502
geographic location (longitude)
missing: third party data
binning parameters
tetramer and coverage
contamination score
1.13
GUNC clade separation score
0.3
taxonomic classification
d__Bacteria;p__Bacillota_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_AP;s__Clostridium_AP sp000509125
linked to SPIRE study
https://spire.embl.de/spire/v1/study/129
completeness software
CheckM2 v0.1.3
contig N50
9067
linked to SPIRE sample
https://spire.embl.de/spire/v1/sample/16412
SPIRE genome cluster
https://spire.embl.de/spire/v1/cluster/spire_v1_095_000397820
geographic location (country and/or sea)
missing: third party data
binning software
metaBAT2 v2.12.1
linked to analysis project
ERP173950
organism
[Clostridium] scindens
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
GUNC reference representation score
0.73
taxonomic identity marker
multi-marker approach
completeness score
68.13
environmental medium
missing: third party data
geographic location (latitude)
missing: third party data
scientific_name
[Clostridium] scindens
taxonomic classification software
GTDBtk v2.3.2_r214
SPIRE genome id
https://spire.embl.de/spire/v1/genome/spire_mag_00916592
GUNC contamination score
0.19
local environmental context
missing: third party data
MAG coverage software
bwa mem
metagenomic source
metagenomes
project name
SPIRE v1: a Searchable Planetary-scale mIcrobiome REsource
derived from assembly
ERZ27230282
isolation_source
missing: third party data