lake water metagenome
ENA first public
2025-07-11
INSDC center name
Genoscope CEA
INSDC status
public
Submitter Id
NOG06
amount or size of sample collected
60
broad-scale environmental context
aquatic biome [ENVO:00002030]
collection date
2018-06-18
depth
9
elevation
1197
environmental medium
lake water [ENVO:04000007]
geographic location (country and/or sea)
France
geographic location (latitude)
45.495395
geographic location (longitude)
2.888415
geographic location (region and locality)
Lake Pavin, Auvergne, France
local environmental context
freshwater lake [ENVO:00000021]
oxygenation status of sample
aerobic
project name
Microstore
sample collection device
Van Dorn bottle
sample material processing
Water was prefiltered with decreasing pore-size: 150µm, 50µm, 10µm. Microorganisms from the 10 µm filter were resuspended in 300 mL of serile water and centrifuged at 10000g with 0.01% pluronic acid. The pellet was split for DNA and RNA extraction
sample name
NOG06
scientific_name
lake water metagenome
size-fraction lower threshold
10.0
size-fraction upper threshold
50