Rothia koreensis
This sample represents a binned metagenome assembled from the metagenomic runs SRR1631276, SRR1631277, SRR1631278, SRR1631279, SRR1631280, SRR1631281, SRR3188118, SRR3188119, SRR3188120, SRR3188121, SRR3188122, SRR3188123, SRR3188291 of study SRP002480.
INSDC center name
NIH/NHGRI
Submitter Id
SAMPLE_124_bin.5
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes_v3.13.0
binning parameters
--maxbin2 --metabat2 --concoct
binning software
metaWRAP_v1.2.1
broad-scale environmental context
human skin
collection date
not applicable
completeness score
87.25
completeness software
CheckM_v1.1.2
contamination score
0.11
environmental medium
Cut
geographic location (country and/or sea)
USA
geographic location (latitude)
not applicable
geographic location (longitude)
not applicable
investigation type
metagenome-assembled genome
isolation_source
human skin metagenome
local environmental context
Tn-R
metagenomic source
human skin metagenome
project name
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
sample derived from
ERS25060462
sample name
SAMPLE_124_bin.5
scientific_name
Rothia koreensis
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach