uncultured Hyphomicrobiales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR28289115 of study SRP494495.
ENA first public
2025-07-28
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR28289115_metabat2_3
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.15.5
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v1.0.0
broad-scale environmental context
soil
broker name
EBI-EMG
collection date
not provided
completeness score
73.87
completeness software
CheckM2_v1.0.1
contamination score
1.92
environmental medium
tomato
geographic location (country and/or sea)
India
geographic location (latitude)
missing: third party data
geographic location (longitude)
missing: third party data
investigation type
metagenome-assembled genome
isolation_source
rhizosphere metagenome
local environmental context
rhizosphere
metagenomic source
rhizosphere metagenome
project name
The study was carried out to explore the diversity of microorganisms present in the organic fields of Shimla, in comparison to bulk soil and soil under conventional farming practice. Different plants, namely tomato, chilli and apple farms were targeted for sample collection and analysis for the present study.
sample derived from
SAMN39504437
sample name
SRR28289115_metabat2_3
scientific_name
uncultured Hyphomicrobiales bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach