Crocinitomicaceae bacterium
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2025-04-07
GAL
University of British Columbia
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
cb567d30-0ba3-490c-9ea5-b38248da6279
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Estelle Kilias
collecting institution
University of Oxford
collection date
2023-01-25
completeness score
63.91
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
7.17
culture_or_strain_id
1660/36
environmental medium
ciliate culture
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
51.76
geographic location (longitude)
-1.25
geographic location (region and locality)
Oxford|Zoology Department
habitat
Freshwater
host life stage
not applicable
host scientific name
Paramecium deuterobursaria
host sex
not applicable
host taxid
3029279
identified_by
NOT COLLECTED
identifier_affiliation
CCAP
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Paramecium deuterobursaria
local environmental context
freshwater biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
21
organism part
WHOLE ORGANISM
original collection location
Austria
project name
ASG
sample collection device or method
Filtered on 11um nylon filter and washed with NCL autoclaved; concentrated from 50ml to 1.5ml
sample derived from
SAMEA117984141
sample name
cb567d30-0ba3-490c-9ea5-b38248da6279
scientific_name
Crocinitomicaceae bacterium
sequencing method
Pacbio Sequel II
specimen voucher url
https://www.ccap.ac.uk/catalogue/strain-1660-36?mfp=61-archived%5BAvailable%5D&search=1660%2F36&page=2
specimen_id
UOBC0000003
specimen_voucher
1660/36
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
piParDeut1.Crocinitomicaceae_1