Nitrospirales bacterium
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2025-04-07
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
d35dcd27-d16d-42e0-851b-5eb192b49f69
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage
binning software
MaxBin (version 2.2.7); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
KATHRIN BUSCH
collecting institution
GEOMAR
collection date
2017-06-12
completeness score
11.35
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.91
depth
695
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Germany
geographic location (latitude)
54.19
geographic location (longitude)
10.09
geographic location (region and locality)
Kiel | GEOMAR
habitat
rock
host life stage
adult
host scientific name
Murus hirondellei
host sex
not applicable
host taxid
2737913
identified_by
PILAR RÌOS
identifier_affiliation
IEO, Spain
investigation type
metagenome-assembled genome
isolation_source
Sponge: Phakellia hirondellei
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
16
organism part
WHOLE ORGANISM
project name
ASG
relationship
beneficial
sample derived from
SAMEA117984136
sample name
d35dcd27-d16d-42e0-851b-5eb192b49f69
scientific_name
Nitrospirales bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000305
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
odPhaHiro1.Nitrospirales_1