Spirochaetia bacterium
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2025-04-07
GAL
Nova Southeastern University
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
ac9bdbf3-5e15-4aa8-846c-d859e9b1409a
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ| MARIA DEL PILAR| DANIEL TOLEDO
collecting institution
UNIVERSITY OF PUERTO RICO MAYAGUEZ
collection date
2021-05-08
completeness score
96.8
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0
environmental medium
adult gastropod tissue
geographic location (country and/or sea)
Puerto Rico
geographic location (depth)
13.0
geographic location (latitude)
17.94
geographic location (longitude)
-67.24
geographic location (region and locality)
Cabo Rojo
habitat
coral reef
host life stage
adult
host scientific name
Aliger gigas
host sex
not collected
host taxid
291982
identified_by
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ
identifier_affiliation
UNIVERSITY OF PUERTO RICO MAYAGUEZ
investigation type
metagenome-assembled genome
isolation_source
Gastropod: Strombus gigas
local environmental context
marine biome
metagenomic source
mollusc metagenome
number of standard tRNAs extracted
45
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA117984437
sample name
ac9bdbf3-5e15-4aa8-846c-d859e9b1409a
scientific_name
Spirochaetia bacterium
sequencing method
Pacbio Sequel II
specimen_id
NSU0054703
specimen_voucher
Sanger Institute Genome PR43
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
xgStrGiga3.Spirochaetia_1