Luminiphilus sp.
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2025-04-07
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
f57c9ae1-278f-4256-a6ee-d8fbf7c6a567
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
LUCIA PITA
collecting institution
GEOMAR
collection date
2020-12-15
completeness score
80.91
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.54
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Germany
geographic location (depth)
2
geographic location (latitude)
54.42
geographic location (longitude)
10.18
geographic location (region and locality)
GEOMAR Kiel
habitat
rocky shore﻿
host life stage
adult
host scientific name
Halichondria panicea
host sex
not applicable
host taxid
6063
identified_by
LUCIA PITA
identifier_affiliation
GEOMAR
investigation type
metagenome-assembled genome
isolation_source
Sponge: Halichondria panicea
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
29
organism part
WHOLE ORGANISM
project name
ASG
relationship
unknown
sample derived from
SAMEA117984043
sample name
f57c9ae1-278f-4256-a6ee-d8fbf7c6a567
scientific_name
Luminiphilus sp.
sequencing method
Pacbio Sequel II
specimen_id
GHC0000043
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
odHalPani1.Luminiphilus_sp_1