sediment metagenome
collection_date
2023-04-12
depth
0.08
elev
-5
env_broad_scale
temperate marginal sea biome [ENVO_01000856]
env_local_scale
microbial community [PCO:1000004]
env_medium
shallow marine sediment [ENVO:03000034]
geo_loc_name
Germany
lat_lon
54.14 N 11.84 E
samp_mat_process
Sediment collected from chamber and stored at -80 degrees centigrade
taxon_id
412755
sample_description
Sediment from a mesh chamber incubated in Baltic Sea coastal marine sediment for 60 days with no paint particles added (control). Extraction replicate R1 from within chamber C2
sequencing_platform
ILLUMINA
instrument_model
Illumina MiSeq
library_strategy
AMPLICON
library_source
METAGENOMIC
library_selection
PCR
library_layout
paired
nominal_length
290
target_gene
16S rRNA
target_subfragment
V4
pcr_primers
FWD:GTGCCAGCMGCCGCGGTAA REV:GGACTACHVGGGTWTCTAAT
forward_read_file_name
Control_C2_R1_clip_fr_R1.fastq.gz
forward_read_file_checksum
138ea05f3981b1ff3d407f6edb3c660a
reverse_read_file_name
Control_C2_R1_clip_fr_R2.fastq.gz
reverse_read_file_checksum
6a8adaea858da9e392b16a11c3c8fc8d
checksum_method
MD5
investigation_type
miens-survey
environmental_package
sediment
geographic_location_(latitude)
541.456
geographic_location_(longitude)
118.432
geographic_location_(depth)
0.08
geographic_location_(elevation)
-5
total_depth_of_water_column
5
environmental_sample
FALSE
nucl_acid_ext
DNeasy PowerSoil Pro Kit (250), Qiagen, Cat. No. / ID: 47016
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.sediment