Cutibacterium acnes
This sample represents a binned metagenome assembled from the metagenomic run SRR3187446 of study SRP002480.
INSDC center name
NIH/NHGRI
Submitter Id
SAMPLE_2453_bin.2
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes_v3.13.0
binning parameters
--maxbin2 --metabat2 --concoct
binning software
metaWRAP_v1.2.1
broad-scale environmental context
human skin
collection date
2014-04-02
completeness score
98.25
completeness software
CheckM_v1.1.2
contamination score
0.07
environmental medium
Ss
geographic location (country and/or sea)
USA
geographic location (latitude)
38.984652
geographic location (longitude)
-77.094709
investigation type
metagenome-assembled genome
isolation_source
human skin metagenome
local environmental context
Ch-R
metagenomic source
human skin metagenome
project name
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
sample derived from
SRS1310231
sample name
SAMPLE_2453_bin.2
scientific_name
Cutibacterium acnes
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach