Corynebacterium singulare
This sample represents a binned metagenome assembled from the metagenomic runs SRR1631109, SRR1631110, SRR1631111, SRR1631112, SRR1631113, SRR1631114, SRR3187735, SRR3187736, SRR3187737, SRR3187738, SRR3187739, SRR3188139, SRR3188140, SRR3188141, SRR3188142, SRR3188143, SRR3188144 of study SRP002480.
INSDC center name
NIH/NHGRI
Submitter Id
SAMPLE_116_bin.8
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes_v3.13.0
binning parameters
--maxbin2 --metabat2 --concoct
binning software
metaWRAP_v1.2.1
broad-scale environmental context
human skin
collection date
not applicable
completeness score
75.75
completeness software
CheckM_v1.1.2
contamination score
1.03
environmental medium
Skin swab
geographic location (country and/or sea)
USA
geographic location (latitude)
not applicable
geographic location (longitude)
not applicable
investigation type
metagenome-assembled genome
isolation_source
human skin metagenome
local environmental context
Ic-R
metagenomic source
human skin metagenome
project name
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
sample derived from
ERS25060454
sample name
SAMPLE_116_bin.8
scientific_name
Corynebacterium singulare
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach