Leptospirales bacterium
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2025-04-07
GAL
University of Derby
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
b8b0e885-9b51-4cdc-826f-3420dfceda4e
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
NOT PROVIDED
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Santiago Herrera
collecting institution
Lehigh University
collection date
2022-07-01
completeness score
79.22
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.0
depth
89.6
environmental medium
adult coral tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
28.81
geographic location (longitude)
-87.27
geographic location (region and locality)
Louisiana
habitat
hardbottom
host life stage
adult
host scientific name
Madrepora sp. 1 SH 2022
host sex
not collected
host taxid
2982801
identified_by
Santiago Herrera
identifier_affiliation
Lehigh University
investigation type
metagenome-assembled genome
isolation_source
Coral: Madrepora sp. 1 SH 2022
local environmental context
marine biome
metagenomic source
coral metagenome
number of standard tRNAs extracted
26
organism part
WHOLE ORGANISM
original collection date
2022-07-01
original collection location
USA|Louisiana
original geographic location (latitude)
28.805273
original geographic location (longitude)
-87.265063
project name
ASG
proxy voucher
NOT PROVIDED
proxy voucher url
https://collections.nmnh.si.edu/search/iz/
sample collection device or method
ROV
sample derived from
SAMEA117984118
sample name
b8b0e885-9b51-4cdc-826f-3420dfceda4e
scientific_name
Leptospirales bacterium
sequencing method
Pacbio Sequel II
specimen voucher url
https://collections.nmnh.si.edu/search/iz/
specimen_id
UDUK1666284
specimen_voucher
USNM:1666284
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
jaMadSpea1.Leptospirales_1
voucher institution url
https://ror.org/00cz47042