Cutibacterium acnes
This sample represents a binned metagenome assembled from the metagenomic runs SRR14332550, SRR14332551 of study SRP314237.
INSDC center name
NIH/NHGRI
Submitter Id
SAMPLE_875_bin.3
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metaSPAdes_v3.13.0
binning parameters
--maxbin2 --metabat2 --concoct
binning software
metaWRAP_v1.2.1
broad-scale environmental context
human skin
collection date
2014
completeness score
99.39
completeness software
CheckM_v1.1.2
contamination score
0.54
environmental medium
swab
geographic location (country and/or sea)
USA
geographic location (latitude)
38.999838
geographic location (longitude)
-77.106017
investigation type
metagenome-assembled genome
isolation_source
human skin metagenome
local environmental context
N
metagenomic source
human skin metagenome
project name
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
sample derived from
SRS8780159
sample name
SAMPLE_875_bin.3
scientific_name
Cutibacterium acnes
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach