Corynebacterium afermentans
This sample represents a binned metagenome assembled from the metagenomic runs SRR1632829, SRR1632830, SRR1632831, SRR1632832, SRR1632833, SRR1632834, SRR3191694, SRR3191695, SRR3191696, SRR3191697, SRR3191698, SRR3191716 of study SRP002480.
INSDC center name
NIH/NHGRI
Submitter Id
SAMPLE_174_bin.6
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes_v3.13.0
binning parameters
--maxbin2 --metabat2 --concoct
binning software
metaWRAP_v1.2.1
broad-scale environmental context
human skin
collection date
not applicable
completeness score
97.32
completeness software
CheckM_v1.1.2
contamination score
0.0
environmental medium
Cut
geographic location (country and/or sea)
USA
geographic location (latitude)
not applicable
geographic location (longitude)
not applicable
investigation type
metagenome-assembled genome
isolation_source
human skin metagenome
local environmental context
Tn-L,Tn-R
metagenomic source
human skin metagenome
project name
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
sample derived from
ERS25060509
sample name
SAMPLE_174_bin.6
scientific_name
Corynebacterium afermentans
sequencing method
Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach