Metagenome-assembled genome: SRR27822710_binner123_Refined_17
uncultured bacterium
ENA first public
2025-08-14
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR27822710_binner123_Refined_17
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.15.5
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v1.0.0
broad-scale environmental context
soil
broker name
EBI-EMG
collection date
2023-10
completeness score
72.88
completeness software
CheckM2_v1.0.1
contamination score
0.14
environmental medium
maize
geographic location (country and/or sea)
China
geographic location (latitude)
28.35000000
geographic location (longitude)
116.18000000
investigation type
metagenome-assembled genome
isolation_source
rhizosphere metagenome
local environmental context
rhizosphere
metagenomic source
rhizosphere metagenome
project name
Beneficial interactions between rhizosphere microbes and soil are pivotal for crop fitness. Nevertheless, the principles underlying the assembly of rhizosphere microbiomes across various soils and nutrient status remain elusive. Here, we examined the microbiomes in the rhizosphere and bulk soils of maize grown under three soil types with fertilization for at least 29 years. We conclude that maize selects rhizobacteria based on microbial functional traits beneficial to its own performance not solely on species composition.
sample derived from
SAMN39711928
sample name
SRR27822710_binner123_Refined_17
scientific_name
uncultured bacterium
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach