Metagenome-assembled genome: SRR28262208_binner23_Refined_18
uncultured Massilia sp.
ENA first public
2025-08-14
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR28262208_binner23_Refined_18
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.15.5
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v1.0.0
broad-scale environmental context
soil
broker name
EBI-EMG
collection date
2023-01-15
completeness score
86.84
completeness software
CheckM2_v1.0.1
contamination score
2.58
environmental medium
tomato
geographic location (country and/or sea)
China
geographic location (latitude)
24.58000000
geographic location (longitude)
118.10000000
investigation type
metagenome-assembled genome
isolation_source
rhizosphere metagenome
local environmental context
rhizosphere
metagenomic source
rhizosphere metagenome
project name
We aimed to (1) determine the composition of microbiomes and resistomes in xylem (2) explore the effects of sludge addition on xylem ARG risks, including abundance, mobility, pathogenicity, activity, and accumulation (3) elucidate potential mechanisms behind the shifts in xylem resistomes under sludge addition.
sample derived from
SAMN40242069
sample name
SRR28262208_binner23_Refined_18
scientific_name
uncultured Massilia sp.
sequencing method
DNBSEQ-T7
taxonomic identity marker
multi-marker approach