d09e1c87-3375-496a-8e55-93d5847c7cea-asg-MAGScoT_cleanbin_000001
Rhodococcus qingshengii
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2020-01-01
GAL
University of California
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
d09e1c87-3375-496a-8e55-93d5847c7cea
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
UNIVERSITY OF CALIFORNIA
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Michael Dawson
collecting institution
UC Merced
collection date
2022-07-30
completeness score
93.98
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.0
depth
4.7
environmental medium
adult xenacoelomorph tissue
geographic location (country and/or sea)
Palau
geographic location (latitude)
7.33
geographic location (longitude)
134.43
geographic location (region and locality)
Koror | Hafa Adai Reef
habitat
Reef
host life stage
adult
host scientific name
Haplodiscus bocki
host sex
not collected
host taxid
2916798
identified_by
Michael Dawson
identifier_affiliation
UC Merced
investigation type
metagenome-assembled genome
isolation_source
Xenacoelomorph: Haplodiscus bocki
local environmental context
marine biome
metagenomic source
invertebrate metagenome
number of standard tRNAs extracted
121
organism part
WHOLE ORGANISM
original collection date
2022-07-29
original collection location
Palau | Koror | Hafa Adai Reef
original geographic location (latitude)
7.3253
original geographic location (longitude)
134.4318
project name
ASG
sample collection method
by hand
sample derived from
SAMEA117843992
sample name
d09e1c87-3375-496a-8e55-93d5847c7cea
scientific_name
Rhodococcus qingshengii
sequencing method
Pacbio Sequel II
specimen_id
UCALI0000012
specimen_voucher
NOT_APPLICABLE
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
txHapBock2.Rhodococcus_qingshengii_1