Pathogen: clinical or host-associated sample from Klebsiella quasipneumoniae subsp. quasipneumoniae
Klebsiella quasipneumoniae subsp. quasipneumoniae
strain
1223
collected_by
Aiman Waheed
collection_date
2022-05-25
geo_loc_name
Pakistan: Khyber Pakhtunkhwa, Peshawar
host
Homo sapiens
host_disease
urinary tract infection
isolation_source
Urine sample from patient with suspected urinary tract infection
lat_lon
Not applicable
culture_collection
Not applicable
genotype
not applicable
host_age
56
host_description
not applicable
host_disease_outcome
not applicable
host_disease_stage
not applicable
host_health_state
not applicable
host_sex
female
host_subject_id
#Cl28
host_tissue_sampled
not applicable
passage_history
not applicable
pathotype
not applicable
serotype
not applicable
serovar
not applicable
specimen_voucher
not applicable
subgroup
not applicable
subtype
not applicable
sequencing_platform
Illumina MiSeq
assembly_method
Shovill v1.1.0 (SPAdes backend)
genome_coverage
52x
antimicrobial_resistance_profile
MDR phenotype: susceptible to amikacin, gentamicin, cefotaxime, ceftazidime, ceftazidime-avibactam, meropenem, tigecycline; resistant to amoxicillin-clavulanate, cefepime, cefoperazone-sulbactam, piperacillin-tazobactam, ciprofloxacin, tetracycline
BioSampleModel
Pathogen.cl