12871.2129b; Cervicovaginal Microbiome in Hispanics using a multi-omics approach
vaginal metagenome
ENA first public
2025-12-12
INSDC center name
UCSDMI
INSDC status
public
Submitter Id
qiita_sid_12871:12871.2129b
age
36
age_of_first_coitus
19
age_range
31_40
altitud
not applicable
altitude
not applicable
anonymized_name
not provided
antibiotics_2months
No
antibiotics_how_many_days
not provided
antibiotics_last_2_months
No
biopsy
No
birth_mode
Vaginal
birthmode
Vaginal
bmi
36
bmi_analysis
Obese_Class_II
bmi_ds
Obese
bmi_to_keep
YES
brand_of_antibiotic
not provided
brand_of_vaccine
not provided
cervical_hpvhr
not provided
cervical_hpvlr
not provided
collection date
2022
collection_date
2022
collection_timestamp
2021
colposcopy
No
consensus
NILM
consensus_db
YES
consensus_status
NILM/NA
consensus_to_keep
YES
consensus_worked
NILM
consensus_worked_no_ascus_chscctohgsil
not provided
country
Puerto Rico
cst
not provided
cst1
not provided
cyt_pat_in_record
not provided
cytology
NILM
cytology_date
14_Jul_2021
date_of_last_use_day_month_year
not provided
depth
not applicable
disease_state
NA_NILM
dna_extracted
yes
dosis
not provided
drinking
Yes
drinking_presentand_past
Yes
ds_to_keep
NO
elevation
0
empo_1
Host-associated
empo_2
Animal
empo_3
Animal secretion
empo_4
Animal secretion (non-saline)
env_biome
human-associated habitat
env_feature
human-associated habitat
env_material
Cervical Lavage
env_package
human-vaginal
geo_loc_name
Puerto Rico:San Juan
geographic location (country and/or sea)
Puerto Rico
have_you_ever_used_antibiotics
not provided
hospital
UDH
host_age_units
years
host_body_habitat
UBERON:genitourinary system
host_body_product
UBERON:mucus
host_body_site
UBERON:vagina
host_common_name
human
host_height
not provided
host_height_units
not provided
host_life_stage
adult
host_sex
female
host_subject_id
1023c_GVR
host_weight
not provided
host_weight_units
not provided
hpv_comercial
Not_Done
hpv_comercial_date
Not_Done
hpv_status
not provided
hpv_type_abbr
not provided
hpv_types
not provided
hpv_types_hr_lr_both
not provided
hpv_vaccine
Yes
hr31
not provided
hr33
not provided
hr35
not provided
hr39
not provided
hr45
not provided
hr51
not provided
hr52
not provided
hr56
not provided
hr58
not provided
hr59
not provided
hr66
not provided
hr68
not provided
ifng
not provided
il_10
not provided
il_1b
not provided
il_4
not provided
il_6
not provided
il_8
not provided
ip10
not provided
isolate_scientific_name
not applicable
isolate_strain_taxonomy_id
not applicable
last_period
not provided
latitude
18.398374
longitude
-66.074534
lr19
not provided
lr40
not provided
lr43
not provided
lr44
not provided
lr53
not provided
lr54
not provided
lr6
not provided
lr70
not provided
lr74
not provided
mcp1
not provided
menopause
No Menopause
mip1a
not provided
n_of_sexual_partners
7
number_of_sexual_partners
7
pathology
Not_Done
pathology_date
not provided
ph
6
physical_specimen_location
Microbial Ecology and Genomics Lab RCM San Juan PR
physical_specimen_remaining
yes
pregnancy_status
not provided
pregnancy_trimester
not provided
pregnant
No
project_name
Association of cervical microbiota with cervical HPV infections
qiita_prepid
12709
range_age_of_first_coitus
16_20
range_number_of_sexual_partners
5_9
range_sexual_partners
not provided
rank_score_ifng
not provided
rank_score_il_10
not provided
rank_score_il_1b
not provided
rank_score_il_4
not provided
rank_score_il_6
not provided
rank_score_il_8
not provided
rank_score_ip10
not provided
rank_score_mcp1
not provided
rank_score_mip1a
not provided
rank_score_tgfb1
not provided
rank_score_tgfb2
not provided
rank_score_tgfb3
not provided
rank_score_tnfa
not provided
reason_of_use
not provided
record_number
SM189867
reproductive_status
Non_pregnant
sample name
qiita_sid_12871:12871.2129b
sample_overlap
B
sample_type
Cervical Lavage
sampleid_file
not provided
samples_to_keep
YES
sampling_date
2021-07-14
sampling_year
2021
scientific_name
vaginal metagenome
sexual_preference
Heterosexual
smoking
Yes
smoking_present_or_history
Yes
subcst
not provided
subjectid
not provided
tgfb1
not provided
tgfb2
not provided
tgfb3
not provided
tnfa
not provided
total_amount_of_hrhpv_types
not provided
tube_id
not provided
visit_number
2nd_visit