Cervicovaginal Microbiome in Hispanics using a multi-omics approach; 12871.2204b
vaginal metagenome
ENA first public
2025-12-12
INSDC center name
UCSDMI
INSDC status
public
Submitter Id
qiita_sid_12871:12871.2204b
age
31
age_of_first_coitus
24
age_range
31_40
altitud
not applicable
altitude
not applicable
anonymized_name
not provided
antibiotics_2months
No
antibiotics_how_many_days
not provided
antibiotics_last_2_months
No
biopsy
Yes
birth_mode
Vaginal
birthmode
Vaginal
bmi
32.7
bmi_analysis
Obese_Class_I
bmi_ds
Obese
bmi_to_keep
YES
brand_of_antibiotic
not provided
brand_of_vaccine
not provided
cervical_hpvhr
35_56
cervical_hpvlr
Negative
collection date
2022
collection_date
2022
collection_timestamp
2021
colposcopy
Yes
consensus
LGSIL
consensus_db
YES
consensus_status
LGSIL/HPV+
consensus_to_keep
YES
consensus_worked
LGSIL
consensus_worked_no_ascus_chscctohgsil
not provided
country
Puerto Rico
cst
not provided
cst1
not provided
cyt_pat_in_record
Yes_No
cytology
HGSIL
cytology_date
20_Jan_2021
date_of_last_use_day_month_year
not provided
depth
not applicable
disease_state
HR_LGSIL
dna_extracted
yes
dosis
not provided
drinking
No
drinking_presentand_past
No
ds_to_keep
YES
elevation
0
empo_1
Host-associated
empo_2
Animal
empo_3
Animal secretion
empo_4
Animal secretion (non-saline)
env_biome
human-associated habitat
env_feature
human-associated habitat
env_material
Cervical Lavage
env_package
human-vaginal
geo_loc_name
Puerto Rico:San Juan
geographic location (country and/or sea)
Puerto Rico
have_you_ever_used_antibiotics
not provided
hospital
UDH
host_age_units
years
host_body_habitat
UBERON:genitourinary system
host_body_product
UBERON:mucus
host_body_site
UBERON:vagina
host_common_name
human
host_height
not provided
host_height_units
not provided
host_life_stage
adult
host_sex
female
host_subject_id
2204b_MTP
host_weight
not provided
host_weight_units
not provided
hpv_comercial
Positive_for_Other_HR
hpv_comercial_date
20_Jan_2021
hpv_status
Positive
hpv_type_abbr
HR
hpv_types
High_Risk
hpv_types_hr_lr_both
High_Risk
hpv_vaccine
No
hr31
Negative
hr33
Negative
hr35
Positive
hr39
Negative
hr45
Negative
hr51
Negative
hr52
Negative
hr56
Positive
hr58
Negative
hr59
Negative
hr66
Negative
hr68
Negative
ifng
not provided
il_10
not provided
il_1b
not provided
il_4
not provided
il_6
not provided
il_8
not provided
ip10
not provided
isolate_scientific_name
not applicable
isolate_strain_taxonomy_id
not applicable
last_period
20_Jan_2020
latitude
18.398374
longitude
-66.074534
lr19
Negative
lr40
Negative
lr43
Negative
lr44
Negative
lr53
Negative
lr54
Negative
lr6
Negative
lr70
Negative
lr74
Negative
mcp1
not provided
menopause
No Menopause
mip1a
not provided
n_of_sexual_partners
1
number_of_sexual_partners
1
pathology
CIN_1
pathology_date
20_Jan_2021
ph
6
physical_specimen_location
Microbial Ecology and Genomics Lab RCM San Juan PR
physical_specimen_remaining
yes
pregnancy_status
not provided
pregnancy_trimester
not provided
pregnant
No
project_name
Association of cervical microbiota with cervical HPV infections
qiita_prepid
11566
range_age_of_first_coitus
21_24
range_number_of_sexual_partners
0_2
range_sexual_partners
5_9
rank_score_ifng
not provided
rank_score_il_10
not provided
rank_score_il_1b
not provided
rank_score_il_4
not provided
rank_score_il_6
not provided
rank_score_il_8
not provided
rank_score_ip10
not provided
rank_score_mcp1
not provided
rank_score_mip1a
not provided
rank_score_tgfb1
not provided
rank_score_tgfb2
not provided
rank_score_tgfb3
not provided
rank_score_tnfa
not provided
reason_of_use
not provided
record_number
SM412503
reproductive_status
Non_pregnant
sample name
qiita_sid_12871:12871.2204b
sample_overlap
B
sample_type
Cervical Lavage
sampleid_file
not provided
samples_to_keep
YES
sampling_date
2021-01-20
sampling_year
2021
scientific_name
vaginal metagenome
sexual_preference
Heterosexual
smoking
No
smoking_present_or_history
No
subcst
not provided
subjectid
not provided
tgfb1
not provided
tgfb2
not provided
tgfb3
not provided
tnfa
not provided
total_amount_of_hrhpv_types
2
tube_id
not provided
visit_number
2nd_visit