Metagenome-Assembled Genome spire_mag_00178535 in SPIRE v01 classified as Ruminococcus_C sp000433635
Ruminococcus sp.
GUNC clade separation score
0.0
GUNC contamination score
0.0
GUNC reference representation score
0.91
GUNC version
GUNC v1.0.6
INSDC center name
EMBL Heidelberg
MAG coverage software
bwa mem
SPIRE genome cluster
https://spire.embl.de/spire/v1/cluster/specI_v4_02811
SPIRE genome id
https://spire.embl.de/spire/v1/genome/spire_mag_00178535
Submitter Id
spire_mag_00178535
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
megahit 1.2.9
binning parameters
tetramer and coverage
binning software
metaBAT2 v2.12.1
broad-scale environmental context
missing: third party data
collection date
missing: third party data
completeness score
68.84
completeness software
CheckM2 v0.1.3
contamination score
0.92
contig N50
5762
derived from assembly
ERZ27274246
environmental medium
missing: third party data
geographic location (country and/or sea)
missing: third party data
geographic location (latitude)
missing: third party data
geographic location (longitude)
missing: third party data
isolation_source
missing: third party data
linked to SPIRE sample
https://spire.embl.de/spire/v1/sample/61345
linked to SPIRE study
https://spire.embl.de/spire/v1/study/407
linked to analysis project
ERP174946
local environmental context
missing: third party data
metagenomic source
metagenomes
number of contigs
256
project name
SPIRE v1: a Searchable Planetary-scale mIcrobiome REsource
sample derived from
SAMN06328461
sample name
spire_mag_00178535
scientific_name
Ruminococcus sp.
taxonomic classification
d__Bacteria;p__Bacillota_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_C;s__Ruminococcus_C sp000433635
taxonomic classification software
GTDBtk v2.3.2_r214
taxonomic identity marker
multi-marker approach