Metagenome-Assembled Genome spire_mag_00934983 in SPIRE v01 classified as CAG-1000 sp000434555
Clostridium sp.
assembly software
megahit 1.2.9
GUNC version
GUNC v1.0.6
broad-scale environmental context
missing: third party data
collection date
missing: third party data
number of contigs
23
sample derived from
SAMEA5814039
geographic location (longitude)
missing: third party data
binning parameters
tetramer and coverage
contamination score
1.80
GUNC clade separation score
0.0
taxonomic classification
d__Bacteria;p__Bacillota;c__Bacilli;o__RF39;f__UBA660;g__CAG-1000;s__CAG-1000 sp000434555
linked to SPIRE study
https://spire.embl.de/spire/v1/study/674
completeness software
CheckM2 v0.1.3
contig N50
126459
linked to SPIRE sample
https://spire.embl.de/spire/v1/sample/101978
SPIRE genome cluster
https://spire.embl.de/spire/v1/cluster/specI_v4_11939
geographic location (country and/or sea)
missing: third party data
binning software
metaBAT2 v2.12.1
linked to analysis project
ERP176660
organism
Clostridium sp.
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
GUNC reference representation score
0.91
taxonomic identity marker
multi-marker approach
completeness score
92.69
environmental medium
missing: third party data
geographic location (latitude)
missing: third party data
scientific_name
Clostridium sp.
taxonomic classification software
GTDBtk v2.3.2_r214
SPIRE genome id
https://spire.embl.de/spire/v1/genome/spire_mag_00934983
GUNC contamination score
0.0
local environmental context
missing: third party data
MAG coverage software
bwa mem
metagenomic source
metagenomes
project name
SPIRE v1: a Searchable Planetary-scale mIcrobiome REsource
derived from assembly
ERZ27305467
isolation_source
missing: third party data