75fb6977-2fd8-46f2-8aa8-714be0b8b578-asg-MAGScoT_cleanbin_000019
Roseibium sp.
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2020-01-01
GAL
University of British Columbia
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
75fb6977-2fd8-46f2-8aa8-714be0b8b578
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
UNIVERSITY OF BRITISH COLUMBIA
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
TINGTING XIANG | ANDREA KIRK
collecting institution
University of North Carolina at Charlotte
collection date
2022-05-31
completeness score
90.29
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
4.69
depth
3-20
environmental medium
ciliate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
13.42
geographic location (longitude)
144.66
geographic location (region and locality)
UNC CHARLOTTE
habitat
on Padina spp. (Phaeophyta) in tropical waters
host life stage
vegetative cell
host scientific name
Maristentor dinoferus
host sex
not applicable
host taxid
244810
identified_by
TIGTING XIANG | ANDREA KIRK
identifier_affiliation
UNC CHARLOTTE
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Maristentor dinoferus
local environmental context
marine biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
49
organism part
WHOLE ORGANISM
original collection date
2022-05-27
original collection location
USA | Guam
project name
ASG
sample collection method
Selected with pipettor from seawater
sample derived from
SAMEA117791342
sample name
75fb6977-2fd8-46f2-8aa8-714be0b8b578
scientific_name
Roseibium sp.
sequencing method
Pacbio Sequel II
specimen_id
UOBC0000020
specimen_voucher
NOT_PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
piMarDino1.Roseibium_sp_1