affec60b-7baf-4b29-9ec5-27613966991c-asg-maxbin2.007
Gammaproteobacteria bacterium
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2020-01-01
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
affec60b-7baf-4b29-9ec5-27613966991c
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage
binning software
MaxBin (version 2.2.7); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
Yu-Jing Chiou
collecting institution
University of New South Wales
collection date
2024-02-29
completeness score
89.22
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
1.83
depth
10
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Australia
geographic location (latitude)
-33.99
geographic location (longitude)
151.23
geographic location (region and locality)
New South Wales | Bare Island | Sydney
habitat
Coastal rocky reef
host life stage
adult
host scientific name
Psammocinia perforodorsa
host sex
not collected
host taxid
3133105
identified_by
Torsten Thomas
identifier_affiliation
University of New South Wales
investigation type
metagenome-assembled genome
isolation_source
Sponge: Psammocinia perforodorsa
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
47
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA117791376
sample name
affec60b-7baf-4b29-9ec5-27613966991c
scientific_name
Gammaproteobacteria bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000324
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
odPsaPerf1.Gammaproteobacteria_1