ae1f63af-6803-4b2c-9e7a-a69ed6c8d28b-asg-MAGScoT_cleanbin_000052
Candidatus Nitrosopumilus sp.
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2020-01-01
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
ae1f63af-6803-4b2c-9e7a-a69ed6c8d28b
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
KATHRIN BUSCH
collecting institution
GEOMAR
collection date
2017-06-12
completeness score
38.83
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.97
depth
330
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Germany
geographic location (latitude)
54.19
geographic location (longitude)
10.09
geographic location (region and locality)
Kiel | GEOMAR
habitat
bottom
host life stage
adult
host scientific name
Thenea valdiviae
host sex
not applicable
host taxid
1006815
identified_by
HANS TORE RAPP
identifier_affiliation
UiB, Norway
investigation type
metagenome-assembled genome
isolation_source
Sponge: Thenea valdiviae
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
21
organism part
WHOLE ORGANISM
project name
ASG
relationship
unknown
sample derived from
SAMEA117786318
sample name
ae1f63af-6803-4b2c-9e7a-a69ed6c8d28b
scientific_name
Nitrosopumilus sp.
sequencing method
Pacbio Sequel II
specimen_id
GHC0000313
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
odTheVald1.Nitrosopumilus_sp_3