Metagenome-Assembled Genome spire_mag_01614726 in SPIRE v01 classified as SAAU01s__
Alphaproteobacteria bacterium
assembly software
megahit 1.2.9
GUNC version
GUNC v1.0.6
broad-scale environmental context
missing: third party data
collection date
missing: third party data
number of contigs
53
sample derived from
SAMN08143636
geographic location (longitude)
missing: third party data
binning parameters
tetramer and coverage
contamination score
0.18
GUNC clade separation score
0.17
taxonomic classification
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__RF32;f__SAAU01;g__;s__
linked to SPIRE study
https://spire.embl.de/spire/v1/study/92
completeness software
CheckM2 v0.1.3
contig N50
40829
linked to SPIRE sample
https://spire.embl.de/spire/v1/sample/11854
SPIRE genome cluster
https://spire.embl.de/spire/v1/cluster/spire_v1_095_000604462
geographic location (country and/or sea)
missing: third party data
binning software
metaBAT2 v2.12.1
linked to analysis project
ERP174406
organism
Alphaproteobacteria bacterium
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
GUNC reference representation score
0.41
taxonomic identity marker
multi-marker approach
completeness score
87.31
environmental medium
missing: third party data
geographic location (latitude)
missing: third party data
scientific_name
Alphaproteobacteria bacterium
taxonomic classification software
GTDBtk v2.3.2_r214
SPIRE genome id
https://spire.embl.de/spire/v1/genome/spire_mag_01614726
GUNC contamination score
0.06
local environmental context
missing: third party data
MAG coverage software
bwa mem
metagenomic source
metagenomes
project name
SPIRE v1: a Searchable Planetary-scale mIcrobiome REsource
derived from assembly
ERZ27245987
isolation_source
missing: third party data