Feces
pig gut metagenome
ENA first public
2026-07-30
INSDC center name
UNIVERSITY HOHENHEIM
INSDC status
public
Pig_housing_location
Agricultural Experimental Station of the University of Hohenheim
Pig_housing_type
Group Pens
Pig_location_sampling
Single Pen
Sample Collection Temp
Room Temperature
Sample Storage Temp (C)
-80
Submitter Id
K13_41_FKDN240554102-1A_22LJHHLT4_L7
age_days
82
breeds
DLxPit
broad-scale environmental context
ENVO:01001830
collection date
2023
collection_date
02_08_2023
environmental medium
ENVO:00002003
geo_loc_name
Germany
geographic location (country and/or sea)
Germany
geographic location (latitude)
48.4698266
geographic location (longitude)
9.2730078
lat_lon
48.4698266 N 9.27300782 E
local environmental context
UBERON:0001555
nucl_acid_ext (ng/uL)
82.952
nucleic_acid_extraction_kit_method
QIAamp Fast DNA Stool Mini Kit
pos_cont_type
Zymo Spike-in (25ul)
project name
Limbiom
quality_control_trimming_software
Trim-Galore; FastQC
samp_collect_device
Collection Tubes
samp_collect_method
Direct Fecal Sampling
samp_mat_process
pigs were guided individually into a pen, weighed, and allowed to defecate
samp_name
Pig Feces
samp_size
10
samp_vol_we_dna_ext(mg)
207
sample name
K13_41_FKDN240554102-1A_22LJHHLT4_L7
sample_lysis_method
FastPrep; 6m/s; 40secs
sampling_weight (kg)
29
scientific_name
pig gut metagenome
seq_meth
Illumina Novaseq; 150bp paired
sequencing_data_link
PRJEB113298
sequencing_reads_alignment_tool
Bowtie2
sequencing_reads_assembly_tool
MegaHIT;QUAST
sequencing_reads_binning_tool
MetaBAT
sex
male
statistical_analysis_metrics
Kruskal-Wallis, Wilcoxon rank-sum test, ANCOM-BC2, Shannon entropy, Pielou's evenness, Bray-Curtis Dissimilarity
statistical_analysis_tools
QIIME2(moshpit);Python
taxonomic_annotation_tools
Kraken2;Bracken
taxonomic_anotation_database
Core_nt (October 2025)
weaning_age_days
33