Phascolarctobacterium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic sample SRS1997005 of study SRP100575.
assembly software
missing: third party data
broad-scale environmental context
ankylosing spondylitis patient
collection date
2015-10
sample derived from
SRS1997005
geographic location (longitude)
120.20000000
binning parameters
missing: third party data
contamination score
0.25
completeness software
CheckM2_v1.1.0
geographic location (country and/or sea)
China
binning software
missing: third party data
organism
Phascolarctobacterium sp.
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
96.43
environmental medium
feces
geographic location (latitude)
30.30000000
scientific_name
Phascolarctobacterium sp.
investigation type
metagenome-assembled genome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
To reveal the relationship between the gut microbiome and ankylosing spondylitis, a quantitative metagenomics study that was based on deep shotgun sequencing of the gut microbial DNA from 211 Chinese individuals (97 patients and 104 healthy controls) was carried out. A total of 23,709 genes and 16 metagenomic species that were differentially abundant in the two groups were identified.
sequencing method
missing: third party data
isolation_source
human gut metagenome