Bifidobacterium sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic sample SRS1876536 of study SRP095580.
assembly software
missing: third party data
broad-scale environmental context
ENVO:00009003
collection date
2013/2014
sample derived from
SRS1876536
geographic location (longitude)
missing: third party data
binning parameters
missing: third party data
contamination score
0.83
completeness software
CheckM2_v1.1.0
geographic location (country and/or sea)
Netherlands
binning software
missing: third party data
organism
Bifidobacterium sp.
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
88.17
environmental medium
ENVO:00002003
geographic location (latitude)
missing: third party data
scientific_name
Bifidobacterium sp.
investigation type
metagenome-assembled genome
local environmental context
ENVO:2100002
metagenomic source
human gut metagenome
project name
As part of the 500 Functional Genomics (500FG) project, stool samples from 471 healthy adults were subjected to metagenomic shotgun sequencing (one time point per individual). Concurrently, blood samples were collected from each individual and the cytokine production was measured in response to bacterial and fungal stimulations. Significant inter-individual variation was observed in the gut microbial profiles as well as the immunological profiles. Subsequent association testing showed that microbiome-host interactions modulate the inflammatory cytokine production capacity in healthy individuals.
sequencing method
missing: third party data
isolation_source
human gut metagenome