Gardnerella vaginalis
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR18329099 of study SRP364078.
ENA first public
2026-03-05
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR18329099_bin_10
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.15.5
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v2.0.0
broad-scale environmental context
human reproductive system
broker name
EBI-EMG
collection date
2021-02-26
completeness score
99.99
completeness software
CheckM2_v1.0.1
contamination score
0.23
environmental medium
vagina
geographic location (country and/or sea)
China
geographic location (latitude)
27.99058000
geographic location (longitude)
120.67506400
investigation type
metagenome-assembled genome
isolation_source
human vaginal metagenome
local environmental context
vagina
metagenomic source
human vaginal metagenome
project name
Implantation failure after in vitro fertilization-embryo transfer (IVF-ET) is a challenging health problem. There is a need to explore the pathogenesis of implantation failure. Nomal metagenomic sequencing on vaginal samples to find the corelation of microbiome and failure times of IVF-ET.
sample derived from
SAMN26642897
sample name
SRR18329099_bin_10
scientific_name
Gardnerella vaginalis
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach