Bacteroidales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic sample ERS537285 of study ERP006678.
assembly software
missing: third party data
broad-scale environmental context
human-associated habitat
collection date
2012
sample derived from
ERS537285
geographic location (longitude)
12.56833700
binning parameters
missing: third party data
contamination score
0.02
completeness software
CheckM2_v1.1.0
geographic location (country and/or sea)
China
binning software
missing: third party data
organism
Bacteroidales bacterium
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
91.77
environmental medium
faeces
geographic location (latitude)
55.67609700
scientific_name
Bacteroidales bacterium
investigation type
metagenome-assembled genome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Bacterial infection has long been implicated with rheumatoid arthritis (RA), but a systematic analysis of the probiotic and pathogenic microbiome in RA has been lacking. It is not clear whether and how the gut or oral microbial community is compositionally and functionally altered in RA, and whether and how the microbiota at different body sites overlap. Here we perform whole-genome shotgun sequencing for fecal, dental and salivary samples from a large cohort of RA patients, analyze metagenomic linkage groups to construct an RA classifier.
sequencing method
missing: third party data
isolation_source
human gut metagenome