Agathobacter rectalis
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic sample ERS554257 of study ERP007090.
assembly software
missing: third party data
broad-scale environmental context
human-associated habitat
collection date
2013-05-23
sample derived from
ERS554257
geographic location (longitude)
20.29661100
binning parameters
missing: third party data
contamination score
2.24
completeness software
CheckM2_v1.1.0
geographic location (country and/or sea)
Sweden
binning software
missing: third party data
organism
Agathobacter rectalis
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
94.31
environmental medium
feces
geographic location (latitude)
63.81857700
scientific_name
Agathobacter rectalis
investigation type
metagenome-assembled genome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
We used untargeted metagenomic Illumina sequencing to study fecal samples of 35 Swedish healthcare students, taken before and after embarking on a student exchange program to the Indian peninsula or central Africa. The students were not taking antibiotics between sampling points. Antibiotic resistance gene frequencies were investigated in all samples.
sequencing method
missing: third party data
isolation_source
human gut metagenome