Enterobacterales bacterium
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic sample SRS3638622 of study SRP156699.
assembly software
missing: third party data
broad-scale environmental context
human-associated habitat
collection date
missing: third party data
sample derived from
SRS3638622
geographic location (longitude)
missing: third party data
binning parameters
missing: third party data
contamination score
0.29
completeness software
CheckM2_v1.1.0
geographic location (country and/or sea)
Madagascar
binning software
missing: third party data
organism
Enterobacterales bacterium
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
94.5
environmental medium
feces
geographic location (latitude)
missing: third party data
scientific_name
Enterobacterales bacterium
investigation type
metagenome-assembled genome
local environmental context
human gut
metagenomic source
human gut metagenome
project name
Stool samples from 112 individuals (two villages) in two rural communities of north-eastern Madagascar. Samples were collected by the Madagascar Health and Environmental Research (MAHERY) initiative between 2013 and 2014, and sequenced with Illumina HiSeq 2500.
sequencing method
missing: third party data
isolation_source
human gut metagenome