Gemmatimonadota bacterium
16S recovered
Yes
16S recovery software
Infernal: 1.1.5
ENA first public
2025-12-02
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
minimap2: 2.3; coverm: 0.7.0
Submitter Id
d34d2778-34fb-4b27-b7a8-54a4661b46ca
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metamdbg: 1.2
binning parameters
graph; coverage; hic-mapping
binning software
maxbin2: 2.2.7; metabat2: 2.17; bin3c: 0.3.3; dastool: 1.1.7
broad-scale environmental context
aquatic biome
collection date
2018-08-02
completeness score
86.27
completeness software
checkm2: 1.1.0
contamination score
1.4
depth
587
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Atlantic Ocean
geographic location (latitude)
73.84
geographic location (longitude)
7.57
geographic location (region and locality)
Arctic | Mid-Atlantic Ridge | Schulz Bank | Open Ocean
host scientific name
Craniella infrequens
host taxid
3115544
investigation type
metagenome-assembled genome
isolation_source
Sponge: Craniella infrequens
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
21
project name
ASG
sample derived from
SAMEA120654848
sample name
d34d2778-34fb-4b27-b7a8-54a4661b46ca
scientific_name
Gemmatimonadota bacterium
sequencing method
PacBio Revio; Illumina NovaSeqX; PacBio Revio; PacBio Revio; PacBio Revio; Illumina NovaSeqX; PacBio Revio
tRNA extraction software
tRNAscan-SE: 2.0.12
taxonomic classification
GTDB-Tk: 2.5.2; GTDB DB: r226
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
odCraInfr1.Gemmatimonadota_4