Alistipes sp.
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic sample ERS1069661 of study ERP013827.
assembly software
missing: third party data
broad-scale environmental context
human-associated habitat
collection date
2009/2010
sample derived from
ERS1069661
geographic location (longitude)
5.00000000
binning parameters
missing: third party data
contamination score
1.4
completeness software
CheckM2_v1.1.0
geographic location (country and/or sea)
Netherlands
binning software
missing: third party data
organism
Alistipes sp.
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker
multi-marker approach
completeness score
89.07
environmental medium
feces
geographic location (latitude)
52.00000000
scientific_name
Alistipes sp.
investigation type
metagenome-assembled genome
local environmental context
intestine environment
metagenomic source
human gut metagenome
project name
Ten individuals with metabolic syndrome underwent a single faecal microbiota transplantation (FMT): 5 of which were allogenic, the other 5 autologous. Stool samples were collected before FMT (day 0) and days 2, 14, 42 and 84 after FMT and from the donor before FMT. Metagenomic shotgun sequencing was performed on all samples.
sequencing method
missing: third party data
isolation_source
human gut metagenome