16S V4 amplicon, tomato bulk soil, Control, T2, pot 6
soil metagenome
Compartment: Bulk Soil; Soil: A; Treatment: Control; Timepoint: T2; Pot: 6; Replicate: 1
collection_date
2023-02
env_broad_scale
agricultural ecosystem [ENVO:01001245]
env_local_scale
bulk soil [ENVO:00005802]
env_medium
soil [ENVO:00001998]
geo_loc_name
Ethiopia: Addis Ababa
host
Solanum lycopersicum
lat_lon
9.03738 N 38.83794 E
chem_administration
none
collection_method
sterile spoon for soil; sterile gloves for plant tissue
depth
0-10 cm
growth_facil
field
host_common_name
tomato
host_life_stage
vegetative
host_subspecf_genlin
cultivar:Melkasholla
host_taxid
4081
isolation_source
bulk soil from pot
perturbation
none
plant_growth_med
soil [ENVO:00001998]
plant_struc
not applicable
samp_collect_device
sterile disposable plastic spoon
samp_mat_process
DNA extraction with DNeasy PowerSoil Kit (Qiagen)
samp_size
25 g
samp_store_temp
-20 C
pot_number
Pot_6
compartment
Bulk Soil
soil_type
Soil_A
biological_replicate
Rep_1
timepoint
T2
treatment_arm
Control
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.plant-associated