16S V4 amplicon, tomato root, BABA_Foliar, T3, pot 32
root metagenome
Compartment: Root; Soil: A; Treatment: BABA_Foliar; Timepoint: T3; Pot: 32; Replicate: 2
collection_date
2023-02
env_broad_scale
agricultural ecosystem [ENVO:01001245]
env_local_scale
root system [PO:0025025]
env_medium
plant-associated habitat [ENVO:00000327]
geo_loc_name
Ethiopia: Addis Ababa
host
Solanum lycopersicum
lat_lon
9.03738 N 38.83794 E
chem_administration
beta-aminobutyric acid 5 mM, foliar spray, weekly for 6 weeks
collection_method
sterile spoon for soil; sterile gloves for plant tissue
depth
not applicable
growth_facil
field
host_common_name
tomato
host_life_stage
vegetative
host_subspecf_genlin
cultivar:Melkasholla
host_taxid
4081
isolation_source
surface-sterilised root tissue
perturbation
BABA_Foliar
plant_growth_med
soil [ENVO:00001998]
plant_struc
root [PO:0009005]
samp_collect_device
sterile gloves
samp_mat_process
DNA extraction with DNeasy PowerSoil Kit (Qiagen)
samp_size
intact root system
samp_store_temp
-20 C
pot_number
Pot_32
compartment
Root
soil_type
Soil_A
biological_replicate
Rep_2
timepoint
T3
treatment_arm
BABA_Foliar
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.plant-associated