e730ec9d-4a9a-4bb5-9cbc-936d10a52cc7-asg-odAmpComp2_metamdbg_dastool_4
Gammaproteobacteria bacterium
16S recovered
Yes
16S recovery software
Infernal: 1.1.5
ENA first public
2025-09-23
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
minimap2: 2.29-r1283; coverm: 0.7.0
Submitter Id
e730ec9d-4a9a-4bb5-9cbc-936d10a52cc7
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
metamdbg: 1.2
binning parameters
graph; coverage; hic-mapping
binning software
metabat2: 2.17; dastool: 1.1.7; maxbin2: 2.2.7; metator: 1.3.10; bin3c: 0.3.3
broad-scale environmental context
aquatic biome
collection date
2024-02-29
completeness score
92.46
completeness software
checkm2: 1.1.0
contamination score
1.44
depth
14.3
environmental medium
adult sponge tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
26.16
geographic location (longitude)
-80.08
host scientific name
Amphimedon compressa
host taxid
178514
investigation type
metagenome-assembled genome
isolation_source
Sponge: Amphimedon compressa
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
23
project name
ASG
sample derived from
SAMEA120249617
sample name
e730ec9d-4a9a-4bb5-9cbc-936d10a52cc7
scientific_name
Gammaproteobacteria bacterium
sequencing method
Illumina NovaSeqX; Illumina NovaSeqX; PacBio Revio; Illumina NovaSeqX
tRNA extraction software
tRNAscan-SE: 2.0.12
taxonomic classification
GTDB-Tk: 2.5.2; GTDB DB: r226
taxonomic identity marker
taxonomic novelty determined using RED
tolid
odAmpComp2.Gammaproteobacteria_1