9bd2a55b-fe31-43c7-b671-d7e396a35fd7-asg-odPhoFict1_metamdbg_dastool_19
Synechococcus sp.
16S recovered
Yes
16S recovery software
Infernal: 1.1.5
ENA first public
2025-09-22
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
minimap2: 2.29-r1283; coverm: 0.7.0
Submitter Id
9bd2a55b-fe31-43c7-b671-d7e396a35fd7
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metamdbg: 1.2
binning parameters
graph; coverage; hic-mapping
binning software
dastool: 1.1.7; maxbin2: 2.2.7; bin3c: 0.3.3; metabat2: 2.17; metator: 1.3.10
broad-scale environmental context
aquatic biome
collected_by
RODRIGO COSTA
collecting institution
UNIVERSITY OF LISBON AND CENTRE OF MARINE SCIENCES
collection date
2021-06-08
completeness score
74.89
completeness software
checkm2: 1.1.0
contamination score
8.24
depth
16
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Portugal
geographic location (latitude)
36.98
geographic location (longitude)
-7.99
geographic location (region and locality)
Pedra da Greta
habitat
Coastal Seawater
host life stage
adult
host scientific name
Phorbas fictitius
host sex
not applicable
host taxid
748450
identified_by
JORGE GONÃ‡ALVES
identifier_affiliation
CENTRE OF MARINE SCIENCES
investigation type
metagenome-assembled genome
isolation_source
Sponge: Phorbas fictitius
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
19
organism part
WHOLE ORGANISM
project name
ASG
relationship
Heterotrophic Microbiome (Mostly)
sample derived from
SAMEA120246019
sample name
9bd2a55b-fe31-43c7-b671-d7e396a35fd7
sample symbiont of
SAMEA9611629
scientific_name
Synechococcus sp.
sequencing method
Illumina NovaSeq; Illumina NovaSeqX; Illumina NovaSeqX; PacBio Revio; PacBio Revio
specimen_id
GHC0000123
specimen_voucher
NOT PROVIDED
tRNA extraction software
tRNAscan-SE: 2.0.12
taxonomic classification
GTDB-Tk: 2.5.2; GTDB DB: r226
taxonomic identity marker
ani_screen
tolid
odPhoFict1.Synechococcus_sp_1