Sample 9
Protocols: Animals were sacrificed by carbon dioxide inhalation at 38 weeks of age. To partially control for time-of-day effects, mice were sacrificed between 07:00 and 16:00 over two consecutive days, with animals from the four experimental groups processed in an alternating order. Estrous cycle stage was not assessed or controlled for in female mice. Mice were not fasted before organ collection. Half of each liver left lateral lobe was snap-frozen and stored at -80˚C. Snap-frozen liver tissue was embedded in OCT and sectioned at 10 µm thickness. 6 week old F1 hybrid mice derived from a Mus musculus castaneus mother and a C57BL/6J father were fed standard chow diet (Kliba # 3437) or WD (Research Diets # D16022301i; 40 kcal% non-transfat, 20 kcal% fructose and 2% cholesterol) for 32 weeks. Bcl2fastq was used to convert BCL files to paired-end fastq files. No nuclei acid extraction was performed in this experiment. Visium HD WT Panel Gene Expression library preparation was performed exactly according to the manufacturer's instructions.
ENA first public
2026-07-31
INSDC center name
German Cancer Research Center
INSDC status
public
Submitter Id
E-MTAB-17352:Sample 9
age
38
biological sex
male
broker name
ArrayExpress
collection date
not collected
common name
house mouse
developmental stage
adult
diet
standard
disease
healthy
genotype
wild type genotype
geographic location (country and/or sea)
not collected
individual
csb153_24
isolate
not applicable
organism part
liver
sample name
E-MTAB-17352:Sample 9
scientific_name
Mus musculus
strain
C57BL/6J × Mus musculus castaneus F1 hybrid