SARS-CoV-2 from wastewater in Philadelphia
isolation_source
wastewater
geo_loc_name
USA: Pennsylvania, Philadelphia
collected_by
Philadelphia Water Department
sequenced_by
Philadelphia Public Health Laboratory
purpose_of_ww_sampling
public health surveillance community-level
purpose_of_ww_sequencing
SARS-CoV-2 surveillance
collection_site_id
SE WPCP
isolate
WW-2026-07-23-SouthEast
specimen_processing_id
WW-2026-07-23-SouthEast-Rep2
specimen_processing
biological replicate
specimen_processing_details
Composite sample was aliquoted into 35 mL biological replicates before concentration, extraction, and sequencing (see specimen_processing_id)
concentration_method
ceres nanotrap
extraction_method
thermo magmax microbiome ultra nucleic acid isolation kit
project_name
CDC NWSS
ww_surv_system_sample_id
WW-260722-260724-SE
ww_sample_site
wastewater treatment plant
ww_sample_matrix
raw wastewater
ww_sample_type
composite
ww_sample_duration
24
ww_surv_jurisdiction
PH
ww_population
291524
ww_surv_target_1
SARS-CoV-2
ww_surv_target_1_gene
N gene
ww_surv_target_1_known_present
yes
ww_surv_target_1_conc
6904.7
ww_surv_target_1_conc_unit
copies/L wastewater
ww_surv_target_1_protocol
GT-Molecular GT-Digital Flu;SC2;RSV;BCoV Wastewater Surveillance Panel for the Bio-Rad QX600 (Cat#100765)
gisaid_accession
EPI_ISL_20507156
gisaid_virus_name
hCoV-19/env/USA/PA-PHL2-VH-Merged-E10-0730/2026
collection_date
2026-07-22
BioSampleModel
SARS-CoV-2: wastewater surveillance