50aa27d2-23b6-4078-91a5-a076dcf0ef97-asg-MAGScoT_cleanbin_000016
assembly software
metaMDBG
habitat
Unknown
broad-scale environmental context
aquatic biome
host scientific name
Breviolum psygmophilum
collection date
2020-12-10
sample derived from
SAMEA115284420
geographic location (longitude)
not collected
binning parameters
coverage; graph
contamination score
0.64
collected_by
MARY ALICE COFFROTH
tRNA extraction software
PROKKA (version 1.14.5)
number of standard tRNAs extracted
51
host sex
not applicable
specimen_id
UDUK0000077
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
16S recovery software
PROKKA (version 1.14.5)
identified_by
JOHN PARKINSON
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
geographic location (country and/or sea)
USA
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
16S recovered
Yes
organism
Mameliella sp.
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
taxonomic identity marker
taxonomic classification defined by topology and ANI
host taxid
2518962
completeness score
99.6
environmental medium
dinoflagellate culture
geographic location (latitude)
not collected
scientific_name
Mameliella sp.
organism part
WHOLE ORGANISM
geographic location (region and locality)
University Park, PA | Pennsylvania State University
GAL_sample_id
NOT PROVIDED
host life stage
vegetative cell
identifier_affiliation
UNIVERSITY OF SOUTH FLORIDA
investigation type
metagenome-assembled genome
specimen_voucher
NOT PROVIDED
local environmental context
marine biome
GAL
University of Derby
MAG coverage software
Minimap2 (version 2.24-r1122)
metagenomic source
dinoflagellate metagenome
project name
ASG
sequencing method
Pacbio Sequel II
collecting institution
University at Buffalo
tolid
pyBrePsyg23.Mameliella_sp_1
isolation_source
Dinoflagellate: Breviolum psygmophilum