Metagenome-Assembled Genome: SRR3962771_bin.15_MetaWRAP_v1.3_MAG
This sample represents a metagenome-assembled genome assembled from the metagenomic run SRR3962771 of study SRP080035.
ENA-FIRST-PUBLIC
2023-04-25
ENA-LAST-UPDATE
2023-04-25
External Id
SAMEA112958501
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2023-04-25T00:21:16Z
INSDC last update
2023-04-25T00:21:16Z
INSDC status
public
Submitter Id
SRR3962771_bin.15_MetaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
MetaWRAP v1.3
broad-scale environmental context
Aquatic
broker name
EMG broker account, EMBL-EBI
collection date
2011-05-15
completeness score
98.49
completeness software
CheckM
contamination score
0.3
environmental medium
Deep Atlantic Ocean
geographic location (country and/or sea)
Pacific Ocean
geographic location (latitude)
21.06
geographic location (longitude)
-150.35
investigation type
metagenome-assembled genome
isolation_source
marine metagenome
local environmental context
Marine
metagenomic source
marine metagenome
project name
Marine microbial communities from the Deep Pacific Ocean - MP1896 metagenome
sample derived from
SAMN05422140
sample name
SRR3962771_bin.15_MetaWRAP_v1.3_MAG
scientific_name
uncultured Mameliella sp.
sequencing method
Illumina HiSeq 2000
taxonomic classification
The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Roseobacteraceae;g__Mameliella;s__
taxonomic identity marker
multi-marker approach