16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2025-03-27
GAL
University of Derby
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
2940a552-2794-42ea-a4d1-08a18b452f74
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MetaBat (version 2.15); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
NOT APPLICABLE
collecting institution
PENNSYLVANIA STATE UNIVERSITY (TRENCH COLLECTION) USA
collection date
2020-09-02
completeness score
99.6
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.42
culture_or_strain_id
rt-401
environmental medium
dinoflagellate culture
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
not collected
geographic location (longitude)
not collected
geographic location (region and locality)
UNIVERSITY OF DERBY
habitat
NOT APPLICABLE
host life stage
adult
host scientific name
Symbiodinium sp. D2
host sex
not applicable
host taxid
1267496
identified_by
T LAJEUNESSE
identifier_affiliation
PENNSYLVANIA STATE UNIVERSITY (TRENCH COLLECTION) USA
investigation type
metagenome-assembled genome
isolation_source
Dinoflagellate: Symbiodinium sp. D2
local environmental context
marine biome
metagenomic source
dinoflagellate metagenome
number of standard tRNAs extracted
53
organism part
WHOLE ORGANISM
project name
ToL
sample derived from
SAMEA117902878
sample name
2940a552-2794-42ea-a4d1-08a18b452f74
scientific_name
Mameliella sp.
sequencing method
Pacbio Sequel II
specimen_id
UDUK1666316
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
ani_screen
tolid
pySymDtwo4.Mameliella_sp_1