Yarrowia porcina CBS 12935 genome assembly
The genome of Yarrowia porcina strain CBS 12935 has been sequenced using Illumina Solexa technology with a shot-gun library and a mate pair library of 8 kb in average. The raw reads were trimmed with Trimmomatic and cutadapt. The assembly was done using SOAPdenovo2 with a kmer of 79. Two successive runs of GapCloser were used to close gaps. The current draft genome sequence is composed of 59 scaffolds larger than 5 kb (all nuclear), for a total size of the nuclear DNA of 30,708,733 bp with an N50 of 1,712,853 bp (7 scaffolds) and a G+C content of 44.3%.
ENA first public
2018-08-09
ENA last update
2021-08-02
External Id
SAMEA4824196
INSDC center alias
INRA UMR 1319
INSDC center name
INRA UMR 1319
INSDC first public
2018-08-09T17:03:22Z
INSDC last update
2021-08-02T15:16:52Z
INSDC status
public
Submitter Id
YAPO0
sample name
YAPO0
strain
CBS 12935
type-material
isotype of Yarrowia porcina