Metagenome-assembled genome: ERP127260_co1_6
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
ERP127260_co1_6
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
terrestrial
collection date
not provided
completeness score
90.21
completeness software
CheckM2;1.0.2;default
contamination score
0.23
environmental medium
terrestrial
geographic location (country and/or sea)
Spain
geographic location (latitude)
39.32458333
geographic location (longitude)
2.98869444
investigation type
metagenome-assembled genome
isolation_source
sediment metagenome
local environmental context
sediment biome
metagenomic source
sediment metagenome
project name
The present study investigates the microbial community structure and potential metabolisms in S'Avall hypersaline sediments. The S'Avall salterns, located in Mallorca (Balearic Islands), have saline concentrations close to saturation (about 37% w/v). Here, we have used shotgun metagenomics and 16S rRNA gene amplicon sequencing to study the community composition and changes along space and time, as well as to reveal the metabolic diversity of the Metagenome Assembled Genomes (MAGs), especially focusing on the methanogenic prokaryotes.
sample derived from
SAMEA8196469,SAMEA8196470
sample name
ERP127260_co1_6
scientific_name
Candidatus Hadarchaeota archaeon
sequencing method
Illumina MiSeq,Illumina HiSeq 2000
taxonomic identity marker
multi-marker approach