Mouse cecal microbiota - HpSHC - week 16 - replicate 3
collection_date
not collected
env_broad_scale
mouse gut microbiome
env_local_scale
cecum
env_medium
cecal contents
geo_loc_name
China: Guizhou, Guiyang
host
Mus musculus
lat_lon
not collected
biol_stat
inbred line
chem_administration
Dietary choline supplementation at 3%
collection_method
Cecal contents collected at the experimental endpoint
host_body_habitat
cecum
host_body_product
cecal contents
host_common_name
house mouse
host_diet
3% choline-supplemented diet
host_disease
Helicobacter pylori infection
host_genotype
wild type
host_life_stage
adult
host_sex
male
host_subject_id
HpSHC16_3
host_subspecf_genlin
strain:C57BL/6J
host_taxid
10090
host_tissue_sampled
cecum
isolation_source
cecal contents
perturbation
3% choline-supplemented diet; intragastric inoculation with Helicobacter pylori strain S7; sampled after 16 weeks of intervention
samp_mat_process
Genomic DNA extracted using the CTAB method
source_material_id
HpSHC16_3
experimental_group
HpSHC
time_point
16 weeks
biological_replicate
3
h_pylori_infection
infected
dietary_choline_percent
3%
BioSampleModel
MIMARKS.survey
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated