893489fd-1230-40b3-8a9b-d4911744ee3f-asg-MAGScoT_cleanbin_000064
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-03-17
GAL
University of Derby
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
893489fd-1230-40b3-8a9b-d4911744ee3f
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
UNIVERSITY OF DERBY
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Kate Quigley
collecting institution
Australian Institute of Marine Science
collection date
2020-11-10
completeness score
70.38
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
9.55
depth
5
environmental medium
dinoflagellate culture
geographic location (country and/or sea)
Australia
geographic location (latitude)
-14.34
geographic location (longitude)
145.27
geographic location (region and locality)
TopJewell
habitat
NA
host life stage
not applicable
host scientific name
Symbiodinium sp. 221 229
host sex
not applicable
host taxid
2885082
identified_by
Kate Quigley, Sam Noonan
identifier_affiliation
Australian Insitute of Marine Science
investigation type
metagenome-assembled genome
isolation_source
Dinoflagellate: Symbiodinium sp. 221 229
local environmental context
marine biome
metagenomic source
dinoflagellate metagenome
number of standard tRNAs extracted
38
organism part
WHOLE ORGANISM
original collection date
2020-11-10
original collection location
Australia | TopJewell
project name
ASG
sample derived from
SAMEA117829808
sample name
893489fd-1230-40b3-8a9b-d4911744ee3f
scientific_name
Candidatus Promineifilaceae bacterium
sequencing method
Pacbio Sequel II
specimen_id
UDUK0000236
specimen_voucher
NA
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
pySymSpeb4.Promineifilaceae_1