N1_Bin_Bin_40_sub
Sediment samples were collected by a surface sediment sampler. Following collection, samples were placed in sterile 50 ml plastic bags, frozen at -80°C.
ENA-FIRST-PUBLIC
2023-01-18
ENA-LAST-UPDATE
2023-01-18
External Id
SAMEA14073556
INSDC center alias
Marine College, Shandong University
INSDC center name
marine college, shandong university
INSDC first public
2023-01-18T00:18:49Z
INSDC last update
2023-01-18T00:18:49Z
INSDC status
public
Submitter Id
N1_Bin_Bin_40_sub
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT v1.2.9
binning parameters
anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning software
CONCOCT, MAXBIN2,METABAT2, refined with dastool and manually with anvi'o 6.2
collection_date
2018-10-15
completeness score
85.14
completeness software
checkM v1.1.3
contamination score
1.11
environment (biome)
marine biome [ENVO:00000447]
environment (feature)
microbial feature [ENVO:01000007]
environment (material)
coastal sediment [ENVO:03000034]
geographic location (country and/or sea)
China
geographic location (latitude)
37.562
geographic location (longitude)
122.121
investigation type
metagenome-assembled genome
isolation_source
Mariane sediment
metagenomic source
marine metagenome
project name
Metagenomes of marine macroalgae, surrounding seawater and surrounding sediments
sample derived from
ERS11025052
sample name
N1_Bin_Bin_40_sub
sequencing method
Illumina Nova-PE150
taxonomic identity marker
multi-marker approach (GTDB-tk v1.03, GTDB v95)