Metagenome-assembled genome: binchicken_co18_555
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12676968,SRR7053514 of study SRP284006.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co18_555
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT;1.2.9;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
55.07
completeness software
CheckM2;1.0.2;default
contamination score
0.47
environmental medium
aquatic
geographic location (country and/or sea)
Canada
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
freshwater metagenome
local environmental context
freshwater biome
metagenomic source
freshwater metagenome
project name
Boreal Shield lakes number in the millions globally, and an estimated 15% of these lakes develop anoxic waters seasonally. These anoxic waters commonly become ferruginous, with high levels of dissolved ferrous iron and low levels of sulfate and sulfide. Such ferruginous ecosystems have been poorly explored in a modern environmental context and are also relevant toward understanding early Earth ecosystems such as the anoxic and ferruginous oceans predicted during the Archaean Eon (approx. 3.8-2.5 billion years ago). Here we surveyed multiple Boreal Shield lakes at the International Institute for Sustainable Development Experimental Lakes Area (IISD-ELA near Kenora, Ontario, Canada), sampling a core set of eight seasonally anoxic lakes, a permanently oxic reference lake, and samples from other lakes obtained where possible. In this BioProject, metagenome, metatranscriptome, and 16S ribosomal RNA gene amplicon sequencing data are deposited for the 2017-2018 portion of the survey. Data from the 2016 portion of the survey are available under the Joint Genome Institute (JGI) Genome Portal under Proposal ID 502896. Note that this BioProject also contains a small number of 2016 samples (amplicon data only) that were re-sequenced due to failed sequencing in the 2016 run.
sample derived from
SAMN16221752,SAMN08779082
sample name
binchicken_co18_555
scientific_name
uncultured Candidatus Saccharimonas sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach