Metagenome-assembled genome: SRP192927_co4_59
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8925725,SRR8925824 of study SRP192927.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP192927_co4_59
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
engineered
collection date
not provided
completeness score
81.05
completeness software
CheckM2;1.0.2;default
contamination score
5.02
environmental medium
engineered
geographic location (country and/or sea)
China
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
bioreactor metagenome
local environmental context
bioreactor biome
metagenomic source
bioreactor metagenome
project name
In this study, we investigated the metagenome of digestate samples from 56 full-scale biogas plants in China, and compared the differences of microbial communities in biogas plants.
sample derived from
SAMN11458215,SAMN11458196
sample name
SRP192927_co4_59
scientific_name
uncultured Candidatus Saccharimonas sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach