09316a08-0405-4927-8c64-54324f316411-asg-MAGScoT_cleanbin_000026
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-10-16T16:43:54Z
ENA-LAST-UPDATE
2023-10-16T16:43:54Z
External Id
SAMEA114501226
GAL
University of British Columbia
GAL_sample_id
NOT PROVIDED
INSDC center alias
Tree of Life Programme
INSDC center name
tree of life programme
INSDC first public
2023-10-16T16:43:54Z
INSDC last update
2023-10-16T16:43:54Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
09316a08-0405-4927-8c64-54324f316411
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG
barcoding center
UNIVERSITY OF RHODE ISLAND
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected_by
JOHANA ROTTEROVA
collecting institution
UNIVERSITY OF RHODE ISLAND
collection date
2022-09-02
completeness score
96.34
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
2.19
culture_or_strain_id
JUDRED strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
depth
1899-12-30
environmental medium
ciliate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
41.49
geographic location (longitude)
-71.42
geographic location (region and locality)
RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
habitat
salt marsh sediment
host life stage
vegetative cell
host scientific name
Plagiopyla sp. strain JUDRED
host taxid
2980486
identified_by
ANNA SCHRECENGOST
identifier_affiliation
UNIVERSITY OF RHODE ISLAND
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Plagiopyla sp. strain JUDRED
local environmental context
marine salt marsh biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
64
organism part
WHOLE ORGANISM
original collection date
2022-03-21
original collection location
USA | RHODE ISLAND | NARRAGANSETT | POINT JUDITH POND
original geographic location (latitude)
41.380694
original geographic location (longitude)
-71.501028
project name
ASG
sample collection device or method
hand collected into a 50 ml tube
sample derived from
SAMEA114501183
sample name
09316a08-0405-4927-8c64-54324f316411
scientific_name
Candidatus Kapabacteria bacterium
sequencing method
Pacbio Sequel II
specimen_id
UOBC0000031
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
piPlaSpeb1.Kapabacteria_1