Metagenome-Assembled Genome: SRR15443027_bin.5_MetaWRAP_v1.3_MAG
This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR15443027 of study SRP331553.
INSDC center name
EMG
Submitter Id
SRR15443027_bin.5_MetaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
MetaWRAP v1.3
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2016-11-21
completeness score
64.59
completeness software
CheckM
contamination score
0.0
environmental medium
saliva
geographic location (country and/or sea)
USA
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
oral metagenome
local environmental context
oral cavity
metagenomic source
oral metagenome
project name
This study consists of longitudinal saliva samples from children aged 2 months to 5 years from the Center for Oral Health Research in Appalachia 2 study
sample derived from
SAMN20770750
sample name
SRR15443027_bin.5_MetaWRAP_v1.3_MAG
scientific_name
uncultured Candidatus Saccharimonas sp.
sequencing method
Illumina HiSeq 4000
taxonomic classification
The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Saccharibacteria;c__;o__;f__;g__Candidatus Saccharimonas;s__
taxonomic identity marker
multi-marker approach