uncultured Candidatus Saccharimonas sp.
Patescibacteria assembled from Lake Most
ENA-FIRST-PUBLIC
2022-06-30
ENA-LAST-UPDATE
2022-06-30
External Id
SAMEA14306461
INSDC center alias
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public
2022-06-30T00:19:14Z
INSDC last update
2022-06-30T00:19:14Z
INSDC status
public
Submitter Id
MsH-30jul19-11
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters
coverage and kmer
binning software
MetaBAT2
collection date
2019-07-30
completeness score
68.52
completeness software
checkm
contamination score
0
environment (biome)
freshwater lake
environment (feature)
lake
environment (material)
fresh water
geographic location (country and/or sea)
Czech Republic
geographic location (latitude)
50.539746
geographic location (longitude)
13.645342
investigation type
metagenome-assembled genome
isolation_source
Freshwater lake
metagenomic source
freshwater metagenome
project name
PRJEB35640
sample derived from
ERS4065090
sample name
MsH-30jul19-11
sequencing method
Illumina NovaSeq 6000
taxonomic identity marker
multi-marker approach