Metagenome-assembled genome: SRP142039_co2_339
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR7053532,SRR7053533 of study SRP142057.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP142039_co2_339
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
aquatic
collection date
2016-09-20
completeness score
63.19
completeness software
CheckM2;1.0.2;default
contamination score
0.58
environmental medium
aquatic
geographic location (country and/or sea)
Canada
geographic location (latitude)
49.688
geographic location (longitude)
-93.689
investigation type
metagenome-assembled genome
isolation_source
lake water metagenome
local environmental context
lake water biome
metagenomic source
lake water metagenome
project name
Anoxic zone freshwater microbial communities from boreal shield lake in International Institute for Sustainable Development (IISD) Experimental Lakes Area, Ontario, Canada
sample derived from
SAMN08776985,SAMN08777317
sample name
SRP142039_co2_339
scientific_name
uncultured Candidatus Saccharimonas sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach