297141f9-fba7-4f9e-9420-d306970b9f5c-asg-MAGScoT_cleanbin_000130
16S recovered
No
16S recovery software
PROKKA (version 1.14.5)
GAL
University of British Columbia
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
297141f9-fba7-4f9e-9420-d306970b9f5c
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
barcoding center
UNIVERSITY OF RHODE ISLAND
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected_by
JOHANA ROTTEROVA
collecting institution
UNIVERSITY OF RHODE ISLAND
collection date
2021-10-02
completeness score
76.68
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
3.1
culture_or_strain_id
NARRIV strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
depth
1899-12-30
environmental medium
ciliate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
41.49
geographic location (longitude)
-71.42
geographic location (region and locality)
RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
habitat
stratified brackish river anoxic sediment
host life stage
vegetative cell
host scientific name
Metopus sp. strain NARRIV
host taxid
2980491
identified_by
JOHANA ROTTEROVA
identifier_affiliation
UNIVERSITY OF RHODE ISLAND
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Metopus sp. strain NARRIV
local environmental context
estuarine biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
32
organism part
WHOLE ORGANISM
original collection date
2019-08-26
original collection location
USA | RHODE ISLAND | NARRAGANSETT | NARROW RIVER
original geographic location (latitude)
41.502028
original geographic location (longitude)
-71.450139
project name
ASG
sample collection device or method
multicore sampler
sample derived from
SAMEA114407064
sample name
297141f9-fba7-4f9e-9420-d306970b9f5c
scientific_name
Candidatus Kapabacteria bacterium
sequencing method
Pacbio Sequel II
specimen_id
UOBC0000022
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
piMetSpef1.Candidatus_Kapabacteria_4