a087dcbd-f8c7-49b3-b719-ab5ec0399901-asg-MAGScoT_cleanbin_000174
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
GAL
University of British Columbia
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
a087dcbd-f8c7-49b3-b719-ab5ec0399901
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
barcoding center
NOT PROVIDED
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected_by
WILLIAM LEWIS
collecting institution
Department of Biochemistry, University of Cambridge, Cambridge, UK
collection date
2022-10-19
completeness score
64.89
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
8.76
environmental medium
ciliate culture
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
52.20
geographic location (longitude)
0.12
geographic location (region and locality)
Cambridge | University of Cambridge | Department of Biochemistry | Hopkins Building
habitat
Anoxic culture flask
host scientific name
Urostomides striatus
host taxid
1975053
identified_by
GENOVEVA ESTEBAN | WILLIAM LEWIS
identifier_affiliation
Bournemouth University, Bournemouth, United Kingdom | Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Urostomides striatus
local environmental context
freshwater biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
35
organism part
WHOLE ORGANISM
original collection date
2013
original collection location
United Kingdom | Dorset | Wareham | East Stoke | East Stoke Fen Nature Reserve
original geographic location (latitude)
50.679
original geographic location (longitude)
-2.192
project name
ASG
proxy voucher
NOT PROVIDED
sample collection device or method
A pole-mounted beaker was used to collect aquatic sediment from a freshwater pond
sample derived from
SAMEA114409786
sample name
a087dcbd-f8c7-49b3-b719-ab5ec0399901
scientific_name
Candidatus Kapabacteria bacterium
sequencing method
Pacbio Sequel II
specimen_id
UOBC0000069
specimen_voucher
NOT_PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
piUroStri2.Candidatus_Kapabacteria_1