a779f470-4f99-46ee-a3ef-9e4b5b3860d7-asg-MAGScoT_cleanbin_000069
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-10-16T19:03:47Z
ENA-LAST-UPDATE
2023-10-16T19:03:47Z
External Id
SAMEA114501773
GAL
University of British Columbia
GAL_sample_id
NOT PROVIDED
INSDC center alias
Tree of Life Programme
INSDC center name
tree of life programme
INSDC first public
2023-10-16T19:03:47Z
INSDC last update
2023-10-16T19:03:47Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
a779f470-4f99-46ee-a3ef-9e4b5b3860d7
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
barcoding center
UNIVERSITY OF RHODE ISLAND
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected_by
JOHANA ROTTEROVA
collecting institution
UNIVERSITY OF RHODE ISLAND
collection date
2021-10-02
completeness score
90.91
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
9.09
culture_or_strain_id
NARRIV strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
depth
1899-12-30
environmental medium
ciliate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
41.49
geographic location (longitude)
-71.42
geographic location (region and locality)
RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
habitat
stratified brackish river anoxic sediment
host life stage
vegetative cell
host scientific name
Metopus sp. strain NARRIV
host taxid
2980491
identified_by
JOHANA ROTTEROVA
identifier_affiliation
UNIVERSITY OF RHODE ISLAND
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Metopus sp. strain NARRIV
local environmental context
estuarine biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
50
organism part
WHOLE ORGANISM
original collection date
2019-08-26
original collection location
USA | RHODE ISLAND | NARRAGANSETT | NARROW RIVER
original geographic location (latitude)
41.502028
original geographic location (longitude)
-71.450139
project name
ASG
sample collection device or method
multicore sampler
sample derived from
SAMEA114501746
sample name
a779f470-4f99-46ee-a3ef-9e4b5b3860d7
scientific_name
Candidatus Promineofilum sp.
sequencing method
Pacbio Sequel II
specimen_id
UOBC0000022
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
piMetSpef1.Promineofilum_sp_1