Metagenome-assembled genome: SRP272421_co2_799
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12261223,SRR12261225 of study SRP272421.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP272421_co2_799
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
not provided
completeness score
82.54
completeness software
CheckM2;1.0.2;default
contamination score
3.13
environmental medium
aquatic
geographic location (country and/or sea)
USA
geographic location (latitude)
43.099
geographic location (longitude)
-89.405
investigation type
metagenome-assembled genome
isolation_source
freshwater metagenome
local environmental context
freshwater biome
metagenomic source
freshwater metagenome
project name
Metagenomic survey of microbial communities during late anoxia in Lake Mendota
sample derived from
SAMN15573541,SAMN15573539
sample name
SRP272421_co2_799
scientific_name
uncultured Candidatus Saccharimonas sp.
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach