963550f5-4d88-4eb0-99f7-25ebda648600-asg-MAGScoT_cleanbin_000010
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
GAL
University of British Columbia
GAL_sample_id
F25B3
INSDC center name
Tree of Life Programme
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
963550f5-4d88-4eb0-99f7-25ebda648600
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG
barcoding center
UNIVERSITY OF RHODE ISLAND
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected_by
JOHANA ROTTEROVA
collecting institution
UNIVERSITY OF RHODE ISLAND
collection date
2021-10-07
completeness score
97.43
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
2.19
culture_or_strain_id
F25B strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
depth
1899-12-30
environmental medium
ciliate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
41.49
geographic location (longitude)
-71.42
geographic location (region and locality)
RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
habitat
salt marsh sediment
host life stage
vegetative cell
host scientific name
Metopus sp. strain F25B
host taxid
2980492
identified_by
JOHANA ROTTEROVA
identifier_affiliation
UNIVERSITY OF RHODE ISLAND
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Metopus sp. strain F25B
local environmental context
marine salt marshe biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
64
organism part
UNICELLULAR ORGANISMS IN CULTURE
original collection date
2019-08-22
original collection location
USA | MASSACHUSETTS | FALMOUTH | FRESH RIVER
original geographic location (latitude)
41.541889
original geographic location (longitude)
-70.622194
project name
ASG
sample collection device or method
hand collected into a 50 ml tube
sample derived from
SAMEA114406888
sample name
963550f5-4d88-4eb0-99f7-25ebda648600
scientific_name
Candidatus Kapabacteria bacterium
sequencing method
Pacbio Sequel II
specimen_id
UOBC0000023
specimen_voucher
NOT PROVIDED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
piMetSpee1.Candidatus_Kapabacteria_1