Metagenome-Assembled Genome: SRR5395404_bin.5_MetaWRAP_v1.3_MAG
This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR5395404 of study SRP102724.
INSDC center name
EMG
Submitter Id
SRR5395404_bin.5_MetaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
MetaWRAP v1.3
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
not provided
completeness score
61.18
completeness software
CheckM
contamination score
0.0
environmental medium
saliva
geographic location (country and/or sea)
not provided
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
oral metagenome
local environmental context
oral cavity
metagenomic source
oral metagenome
project name
salivary metagenomic in Chinese Children
sample derived from
SAMN06646492
sample name
SRR5395404_bin.5_MetaWRAP_v1.3_MAG
scientific_name
uncultured Candidatus Saccharimonas sp.
sequencing method
Illumina HiSeq 2500
taxonomic classification
The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Saccharibacteria;c__;o__;f__;g__Candidatus Saccharimonas;s__
taxonomic identity marker
multi-marker approach