0.2_20180319_Bin_31_1
This sample represents a MAG derived from the metagenomic sample ERS4821117 and assembly ERZ1764443 - 2018-03-19_0.2_micron
ENA first public
2021-04-07
ENA last update
2021-04-01
External Id
SAMEA8498391
INSDC center alias
MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC center name
MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC first public
2021-04-07T01:08:08Z
INSDC last update
2021-04-01T14:55:34Z
INSDC status
public
Submitter Id
0.2_20180319_Bin_31_1
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
SPAdes version: 3.11.1
binning parameters
anvi'o 6.2 default parameters, DASTOOL with --search-engine diamond
binning software
CONCOCT, refined with dastool and manually with anvi'o 6.2
collection date
2018-03-19
completeness score
73.27
completeness software
checkM v1.1.3
contamination score
1.32
environment (biome)
marine biome [ENVO:00000447]
environment (feature)
microbial feature [ENVO:00002150]
environment (material)
coastal sea water [ENVO:00002150]
geographic location (country and/or sea)
North Sea
geographic location (latitude)
54.19
geographic location (longitude)
7.9
investigation type
metagenome-assembled genome
isolation source
sea water
metagenomic source
marine metagenome
project name
2018 Helgoland Spring Bloom Metagenomes
sample derived from
ERS4821117
sample name
0.2_20180319_Bin_31_1
sequencing method
Illumina HiSeq2500
taxonomic identity marker
multi-marker approach (GTDB-tk v1.03, GTDB v95)