MAG from Co-assembly
MAG retrieved from co-assembly of all metagenomic samples of the bioproject PRJEB90443.
16S recovery software
infernal v1.1.5, Rfam 15.0
16s recovered
No
ENA first public
2025-08-01
INSDC center name
Uni Bremen
INSDC status
public
MAG coverage software
bowtie2 v2.5.4
Submitter Id
Co_bin_104_indper
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics.
assembly software
megahit v1.2.9, SPAdes v4.0.0
binning parameters
differential coverage, tetranucleotide frequency
binning software
concoct v1.1.0, metabat2 v2.17
broad-scale environmental context
marine biome [ENVO:00000447]
collection date
missing: sample group
completeness score
99.99
completeness software
checkm2 v1.1.0
contamination score
0.16
environmental medium
saline water [ENVO:00002010]
geographic location (country and/or sea)
missing: sample group
geographic location (latitude)
missing: sample group
geographic location (longitude)
missing: sample group
isolation_source
marine water
local environmental context
sea water environment [ENVO:01000321]
metagenomic source
marine plankton metagenome
number of standard tRNAs extracted
35
project name
Investigation of environmental disturbances on microbial communities in coastal environments
reassembly post binning
Yes
sample derived from
ERR15116726,ERR15116725,ERR15116724,ERR15116723,ERR15116722,ERR15116721,ERR15116720,ERR15116719,ERR15116718,ERR15116717,ERR15116716,ERR15116715,ERR15116714,ERR15116713,ERR15116712,ERR15116711,ERR15116710,ERR15116709,ERR15116708,ERR15116707,ERR15116706,ERR15116705,ERR15116704,ERR15116703,ERR15116702,ERR15116701,ERR15116700,ERR15116699,ERR15116698,ERR15116697,ERR15116696,ERR15116695,ERR15116694,ERR15116693,ERR15116692,ERR15116691,ERR15116690,ERR15116689,ERR15116688,ERR15116687,ERR15116686,ERR15116685,ERR15116684,ERR15116683,ERR15116682,ERR15116681,ERR15116680,ERR15116679,ERR15116882,ERR15116881,ERR15116880,ERR15116879,ERR15116878,ERR15116877,ERR15116876,ERR15116875,ERR15116874,ERR15116873,ERR15116872,ERR15116871,ERR15116870,ERR15116869,ERR15116868,ERR15116867,ERR15116866,ERR15116865,ERR15116864,ERR15116863,ERR15116862,ERR15116861,ERR15116860,ERR15116859,ERR15116858,ERR15116857,ERR15116856,ERR15116855,ERR15116854,ERR15116853,ERR15116852,ERR15116851,ERR15116850,ERR15116849,ERR15116848,ERR15116847,ERR15116846,ERR15116845,ERR15116844,ERR15116843,ERR15116678,ERR15116677,ERR15116676,ERR15116675,ERR15116674,ERR15116673,ERR15116672,ERR15116671,ERR15116670,ERR15116669,ERR15116668,ERR15116667,ERR15116666,ERR15116665,ERR15116664,ERR15116663,ERR15116662,ERR15116661,ERR15116660,ERR15116659,ERR15116658,ERR15116657,ERR15116656,ERR15116655,ERR15116654,ERR15116653,ERR15116652,ERR15116651,ERR15116650,ERR15116649,ERR15116648,ERR15116647,ERR15116646,ERR15116645
sample name
Co_bin_104_indper
scientific_name
Candidatus Puniceispirillum sp.
tRNA extraction software
tRNAscan-SE 2.0
taxonomic classification
gtdbtk v2.4.1, Genome Taxonomy Database R226
taxonomic identity marker
multi-marker approach