Microcystis-associated phycosphere MAG MAG_33, El Loto urban wetland, Chile
Metagenome-assembled genome recovered from buoyancy-enriched Microcystis-dominated colony culture, El Loto urban wetland, Los Rios Region, Chile
INSDC center name
USS
Submitter Id
ElLoto_MAG_33
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
MEGAHIT v1.2.9
binning parameters
metawrap bin_refinement: completeness >=50%, contamination <=10% (metawrap_50_10_bins); single pooled co-assembly (all 7 read sets), no per-sample assembly/binning
binning software
metaWRAP v1.3.2 (MetaBAT2 + MaxBin2, consensus bin refinement; CONCOCT not used)
broad-scale environmental context
urban biome [ENVO:01000249]
collection date
2023-06-19
completeness score
100
completeness software
CheckM2 v1.0.2
contamination score
0.18
environmental medium
fresh water [ENVO:00002011]
geographic location (country and/or sea)
Chile
geographic location (latitude)
-41.254556
geographic location (longitude)
-73.009139
isolation_source
urban wetland surface water; buoyancy-enriched Microcystis-dominated colony culture (BG-11 medium)
local environmental context
wetland [ENVO:01001209]
metagenomic source
freshwater metagenome
project name
PRJEB123320
sample derived from
ERS31032356,ERS31032357,ERS31032358,ERS31032359,ERS31032360
sample name
ElLoto_MAG_33
scientific_name
uncultured bacterium
taxonomic identity marker
multi-marker approach (GTDB-Tk v2, 120 concatenated bacterial marker proteins)