Metagenome-assembled genome: BPAM22-1_SAMN07482683_MAG_00000015
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome generated from the metagenomic assembly ERZ23487412 of study PRJEB72927.
ENA first public
2026-05-08
INSDC center name
ETH ZURICH
INSDC status
public
Submitter Id
BPAM22-1_SAMN07482683_MAG_00000015
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes 3.14
binning parameters
metabat2 -i assembly.fasta -a coabudance.depth --minContig 2000 --maxEdges 500 -x 1 --minClsSize 200000 --saveCls -v
binning software
MetaBAT2 + co-abundance
broad-scale environmental context
not provided
collection date
2015-12-06
completeness score
76.06
completeness software
Anvio 7.1
contamination score
5.63
environmental medium
not provided
geographic location (country and/or sea)
Australia
geographic location (latitude)
-35.79103000
geographic location (longitude)
132.67638000
investigation type
metagenome-assembled genome
isolation_source
marine metagenome
local environmental context
not provided
metagenomic source
marine metagenome
project name
The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) dataset PRJNA385736. The assembly was generated with metaSPAdes (Nurk et al., 2017) and metagenome-assembled genomes (MAGs) were reconstructed using MetaBAT2 (Kang et al., 2019) with contig coverage information across multiple samples. Methods are described in Paoli et al., 2022 and Ruscheweyh et al., 2022.
sample derived from
SAMN07482683
sample name
BPAM22-1_SAMN07482683_MAG_00000015
scientific_name
Candidatus Pseudothioglobus singularis
sequencing method
ILLUMINA
taxonomic identity marker
multi-marker approach