Metagenome-assembled genome: SRR21518468_bin_9366
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR21518468 of study SRP396543.
ENA first public
2026-02-23
INSDC center name
EMG
INSDC status
public
Submitter Id
SRR21518468_bin_9366
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades_v3.15.5
binning parameters
default
binning software
MGnify-genomes-generation-pipeline_v2.0.0
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2016-12-02
completeness score
99.4
completeness software
CheckM2_v1.0.1
contamination score
0.66
environmental medium
tongue dorsum
geographic location (country and/or sea)
USA
geographic location (latitude)
42.37910000
geographic location (longitude)
-71.11350000
investigation type
metagenome-assembled genome
isolation_source
human oral metagenome
local environmental context
oral cavity
metagenomic source
human oral metagenome
project name
This dataset represents a high temporal resolution study of the healthy human tongue dorsum microbiome. Seventeen healthy volunteers were sampled at up to 7 time points over a two-week interval. The dataset is designed to construct metagenome-assembled genomes for use in the inquiry of strain-level variation within and across donors over short timescales.
sample derived from
SAMN30789112
sample name
SRR21518468_bin_9366
scientific_name
uncultured Candidatus Saccharimonas sp.
sequencing method
NextSeq 500
taxonomic identity marker
multi-marker approach