Metagenome-Assembled Genome: SRR23388425_bin.29_MetaWRAP_v1.3_MAG
This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR23388425 of study SRP421773.
INSDC center name
EMG
Submitter Id
SRR23388425_bin.29_MetaWRAP_v1.3_MAG
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaspades v3.15.3
binning parameters
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software
MetaWRAP v1.3
broad-scale environmental context
human digestive system
broker name
EBI-EMG
collection date
2022
completeness score
63.74
completeness software
CheckM
contamination score
0.0
environmental medium
subgingival plaque
geographic location (country and/or sea)
Hong Kong
geographic location (latitude)
22.3193
geographic location (longitude)
114.1694
investigation type
metagenome-assembled genome
isolation_source
oral metagenome
local environmental context
oral cavity
metagenomic source
oral metagenome
project name
Systematic Analysis of Site-Specific Biosynthetic Gene Clusters (BGCs) of Oral Microbiome in Periodontitis
sample derived from
SAMN33196916
sample name
SRR23388425_bin.29_MetaWRAP_v1.3_MAG
scientific_name
uncultured Candidatus Saccharimonas sp.
sequencing method
Illumina NovaSeq 6000
taxonomic classification
The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Saccharibacteria;c__;o__;f__;g__Candidatus Saccharimonas;s__
taxonomic identity marker
multi-marker approach