4d6ee76e-5c8b-42d2-bd05-150a5eab5958-asg-MetaTOR_134_0_sub
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
GAL
University of British Columbia
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
4d6ee76e-5c8b-42d2-bd05-150a5eab5958
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
barcoding center
NOT PROVIDED
binning parameters
coverage; graph; hic-mapping
binning software
DASTOOL (version 1.1.5); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected_by
WILLIAM LEWIS
collecting institution
Department of Biochemistry, University of Cambridge, Cambridge, UK
collection date
2022-09-16
completeness score
60.94
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
7.65
environmental medium
ciliate culture
geographic location (country and/or sea)
United Kingdom
geographic location (latitude)
52.20
geographic location (longitude)
0.121
geographic location (region and locality)
Cambridge | University of Cambridge | Department of Biochemistry | Hopkins Building
habitat
Anoxic culture flask
host scientific name
Anaerocyclidium porcatum
host taxid
35101
identified_by
GENOVEVA ESTEBAN | WILLIAM LEWIS
identifier_affiliation
Bournemouth University, Bournemouth, United Kingdom | Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Cyclidium porcatum
local environmental context
small freshwater lake biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
37
organism part
WHOLE ORGANISM
original collection date
2013
original collection location
United Kingdom | Dorset | Wareham | East Stoke | East Stoke Fen Nature Reserve
original geographic location (latitude)
50.679
original geographic location (longitude)
-2.192
project name
ASG
proxy voucher
NOT PROVIDED
sample collection device or method
A pole-mounted beaker was used to collect aquatic sediment from a freshwater pond
sample derived from
SAMEA114300906
sample name
4d6ee76e-5c8b-42d2-bd05-150a5eab5958
scientific_name
Candidatus Kapabacteria bacterium
sequencing method
Pacbio Sequel II
specimen_id
UOBC0000070
specimen_voucher
NOT_PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
piCycPorc2.Candidatus_Kapabacteria_2