Metagenome-assembled genome: binchicken_co39_254
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR8925752,SRR8925753 of study SRP192927.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
binchicken_co39_254
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
MetaBAT2;2.15;default
broad-scale environmental context
engineered
collection date
2017-11-08
completeness score
95.65
completeness software
CheckM2;1.0.2;default
contamination score
0.0
environmental medium
engineered
geographic location (country and/or sea)
China
geographic location (latitude)
31.56
geographic location (longitude)
121.68
investigation type
metagenome-assembled genome
isolation_source
bioreactor metagenome
local environmental context
bioreactor biome
metagenomic source
bioreactor metagenome
project name
In this study, we investigated the metagenome of digestate samples from 56 full-scale biogas plants in China, and compared the differences of microbial communities in biogas plants.
sample derived from
SAMN11458209,SAMN11458210
sample name
binchicken_co39_254
scientific_name
uncultured Candidatus Saccharimonas sp.
sequencing method
Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach