Metagenome-assembled genome: SRP062349_co2_266
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR2177968,SRR5855237 of study SRP062349.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP062349_co2_266
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
VAMB;3.0.2;default
broad-scale environmental context
aquatic
collection date
2013-12-30
completeness score
88.32
completeness software
CheckM2;1.0.2;default
contamination score
0.91
environmental medium
aquatic
geographic location (country and/or sea)
USA
geographic location (latitude)
39.32
geographic location (longitude)
-107.46
investigation type
metagenome-assembled genome
isolation_source
groundwater metagenome
local environmental context
groundwater biome
metagenomic source
groundwater metagenome
project name
The Genomes-to-Watershed Scientific Focus Area (SFA) 2.0 aims to develop a predictive</p><p>understanding of how climate or land-use induced changes can affect overall watershed</p><p>biogeochemical functioning. At the Rifle (CO) study site, this scope includes influx of dissolved</p><p>oxygen or nitrate into a perennially suboxic/anoxic aquifer containing a large reservoir of</p><p>reduced Fe- and S-containing compounds. The role of the "Metabolic Potential" component of</p><p>SFA 2.0 is to characterize prevalent metabolic pathways in subsurface microbes and to use these</p><p>data to inform the next generation of trait-based microbial models (GEWaSC).
sample derived from
SAMN03983889
sample name
SRP062349_co2_266
scientific_name
uncultured Candidatus Saccharimonas sp.
sequencing method
Illumina HiSeq 2000,Illumina HiSeq 2500
taxonomic identity marker
multi-marker approach