Metagenome-assembled genome: SRP170004_co1_423
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR12404947,SRR12404962 of study SRP170004.
ENA first public
2024-12-11
INSDC center name
CMR
INSDC status
public
Submitter Id
SRP170004_co1_423
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaSPAdes;3.15.4;default
binning parameters
coverage and kmer
binning software
SemiBin2;2.0.2;default
broad-scale environmental context
aquatic
collection date
2018-05
completeness score
89.28
completeness software
CheckM2;1.0.2;default
contamination score
4.63
environmental medium
aquatic
geographic location (country and/or sea)
South Korea
geographic location (latitude)
not provided
geographic location (longitude)
not provided
investigation type
metagenome-assembled genome
isolation_source
metagenome
local environmental context
metagenome
metagenomic source
metagenome
project name
Investigating the prevalence of antibiotic resistance genes and heavy metal resistance genes along with bacterial community in wastewater treatment plant
sample derived from
SAMN15090774,SAMN15090775
sample name
SRP170004_co1_423
scientific_name
uncultured Candidatus Saccharimonas sp.
sequencing method
Illumina HiSeq 4000
taxonomic identity marker
multi-marker approach