8f1e5305-75fe-4f23-b45d-e97029704257-asg-MAGScoT_cleanbin_000071
16S recovered
No
16S recovery software
PROKKA (version 1.14.5)
ENA first public
2024-02-07
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
8f1e5305-75fe-4f23-b45d-e97029704257
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected_by
JOE LOPEZ
collecting institution
NOVA SOUTHEASTERN UNIVERSITY
collection date
2020-12-16
completeness score
71.48
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.82
depth
7.6
environmental medium
adult sponge tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
26.15
geographic location (longitude)
-80.10
geographic location (region and locality)
Florida|Broward County|Offshore Fort Lauderdale
habitat
Limestone ledge
host life stage
adult
host scientific name
Cinachyrella kuekenthali
host sex
not collected
host taxid
458489
identified_by
JOE LOPEZ
identifier_affiliation
NOVA SOUTHEASTERN UNIVERSITY
investigation type
metagenome-assembled genome
isolation_source
Sponge: Cinachyrella kuekenthali
local environmental context
marine benthic biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
40
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA115182424
sample name
8f1e5305-75fe-4f23-b45d-e97029704257
scientific_name
uncultured candidatus Porisulfidus sp.
sequencing method
Pacbio Sequel II
specimen_id
GHC0000167
specimen_voucher
Y, in ethanol
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
odCinKuek1.Porisulfidus_sp_1