9763eae8-8697-40a4-ab8e-c6eafd03cdb7-asg-MAGScoT_cleanbin_000021
16S recovery software
PROKKA (version 1.14.5)
16s recovered
Yes
ENA first public
2024-03-29
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
9763eae8-8697-40a4-ab8e-c6eafd03cdb7
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected_by
NICOLE WEBSTER
collecting institution
AIMS
collection date
2020-09-23
completeness score
91.81
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
1.72
depth
12.0
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Australia
geographic location (latitude)
18.91
geographic location (longitude)
147.70
geographic location (region and locality)
Queensland | Great Barrier Reef | Davies Reef
habitat
Reef
host life stage
adult
host scientific name
Phyllospongia foliascens
host sex
not collected
host taxid
593584
identified_by
NICOLE WEBSTER
identifier_affiliation
AIMS
investigation type
metagenome-assembled genome
isolation_source
Sponge: Carteriospongia foliascens
local environmental context
marine reef biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
44
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA115457815
sample name
9763eae8-8697-40a4-ab8e-c6eafd03cdb7
scientific_name
uncultured candidatus Porisulfidus sp.
sequencing method
Pacbio Sequel II
specimen_id
GHC0000113
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
odCarFoli1.Porisulfidus_sp_1