Drop ScRNA sequences (10X chromium technique) from one Crassostrea gigas animal - 3000 hemocytes
ENA first public
2024-07-22
INSDC center name
Ifremer
INSDC status
public
RESTRICTION_ENZYME
not applicable
Submitter Id
sam_S6
age
18 months
aquaculture origin
AOAR (Aquaculture Origin Aquaculture Raised)
broker name
SeBiMER
cell_type
Hemocyte
collecting institution
University of Montpellier
collection date
2019-11-17
collector name
Emmanuel Vignal
common name
Pacific oyster
dev_stage
Adult
environmental package
missing
environmental_sample
No
geographic location (country and/or sea)
France
geographic location (depth)
0
geographic location (elevation)
0
geographic location (latitude)
45.79823096728334
geographic location (longitude)
-1.1506379972355019
geographic location (region and locality)
France, Nouvelle-Aquitaine, La Tremblade
investigation type
eukaryote
isolation_source
Ifremer breeding seawater 34PSU - Lat/Lon : 45.79823096728334,-1.1506379972355019
multiplex identifiers
not providded
pcr primers
F:5-CTACACGACGCTCTTCCGATCT-3' R:5-AAGCAGTGGTATCAACGCAGAG-3
ploidy
diploid
project name
hemofight
sample name
sam_S6
sample_description
Crassostrea gigas hemocytes from a 18 months old Ifremer Standardised Animal originated from "Station Ifremer La Tremblade (France) ". Hemocytes where isolated from hemolymph poncture in Alsever modified medium then processed with the 10X chromium Drop-Seq scRNA.
sample_name
S6
scientific_name
Crassostrea gigas
sequencing method
Sequencing by synthesis (Illumina)
tissue_type
Hemolymph