67d6e228-11cb-4d84-84f8-3b579f066c46-asg-MAGScoT_cleanbin_000296
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-02-27
GAL
Geomar Helmholtz Centre
GAL_sample_id
not provided
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
67d6e228-11cb-4d84-84f8-3b579f066c46
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
KATHRIN BUSCH
collecting institution
GEOMAR
collection date
2017-06-12
completeness score
54.42
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
1.28
depth
695
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Germany
geographic location (latitude)
54.19
geographic location (longitude)
10.09
geographic location (region and locality)
Kiel | GEOMAR
habitat
canyon
host life stage
adult
host scientific name
Pachastrella ovisternata
host sex
not applicable
host taxid
1006801
identified_by
PILAR RÌOS
identifier_affiliation
IEO, Spain
investigation type
metagenome-assembled genome
isolation_source
Sponge: Pachastrella ovisternata
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
42
organism part
WHOLE ORGANISM
project name
ASG
relationship
beneficial
sample derived from
SAMEA117781385
sample name
67d6e228-11cb-4d84-84f8-3b579f066c46
scientific_name
Candidatus Saccharimonadales bacterium
sequencing method
Pacbio Sequel II
specimen_id
GHC0000292
specimen_voucher
not provided
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification fully defined by topology
tolid
odPacOvis1.Saccharimonadales_2