38d1ed7c-ebfa-4ef4-bbfe-82bd5ba63b65-asg-maxbin2.019
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2024-07-04
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
38d1ed7c-ebfa-4ef4-bbfe-82bd5ba63b65
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
DASTOOL (version 1.1.5); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
THIERRY PEREZ
collecting institution
CNRS
collection date
2021-03-23
completeness score
81.96
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
2.4
depth
20
environmental medium
adult sponge tissue
geographic location (country and/or sea)
France
geographic location (latitude)
43.16
geographic location (longitude)
5.60
geographic location (region and locality)
La Ciotat
habitat
dark cave
host life stage
adult
host scientific name
Lycopodina hypogea
host sex
not applicable
host taxid
2491183
identified_by
THIERRY PEREZ
identifier_affiliation
CNRS
investigation type
metagenome-assembled genome
isolation_source
Sponge: Lycopodina hypogea
local environmental context
marine benthic biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
46
organism part
WHOLE ORGANISM
project name
ASG
relationship
Heterotrophic Microbiome (Mostly)
sample derived from
SAMEA115803500
sample name
38d1ed7c-ebfa-4ef4-bbfe-82bd5ba63b65
scientific_name
uncultured candidatus Porisulfidus sp.
sequencing method
Pacbio Sequel II
specimen_id
GHC0000171
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
odLycHypo2.Porisulfidus_sp_1