598c6a33-a2d2-4385-860d-65358896cafd-asg-bin.73
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
GAL
University of British Columbia
GAL_sample_id
QDUM3
INSDC center name
Tree of Life Programme
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
598c6a33-a2d2-4385-860d-65358896cafd
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
barcoding center
UNIVERSITY OF RHODE ISLAND
binning parameters
coverage; graph
binning software
MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)
broad-scale environmental context
aquatic biome
collected_by
IVAN CEPICKA
collecting institution
CHARLES UNIVERSITY
collection date
2021-10-02
completeness score
70.09
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.0
culture_or_strain_id
QDUM strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
depth
1899-12-30
environmental medium
ciliate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
41.49
geographic location (longitude)
-71.42
geographic location (region and locality)
RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
habitat
sediment
host life stage
vegetative cell
host scientific name
Metopus sp. strain QDUM
host taxid
2980493
identified_by
JOHANA ROTTEROVA
identifier_affiliation
UNIVERSITY OF RHODE ISLAND
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Metopus sp. strain QDUM
local environmental context
marine benthic biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
31
organism part
UNICELLULAR ORGANISMS IN CULTURE
original collection date
2011
original collection location
GERMANY | ACHTERWASSER
original geographic location (latitude)
54.140482
original geographic location (longitude)
13.728065
project name
ASG
sample collection device or method
hand collected into a 50 ml tube
sample derived from
SAMEA114406874
sample name
598c6a33-a2d2-4385-860d-65358896cafd
scientific_name
Candidatus Gracilibacteria bacterium
sequencing method
Pacbio Sequel II
specimen_id
UOBC0000024
specimen_voucher
not provided
symbiont
N
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
piMetSped1.Candidatus_Gracilibacteria_1