164bb96d-58d1-42e1-9c94-80d65ec326bd-asg-MAGScoT_cleanbin_000025
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-11-23T09:20:14Z
ENA-LAST-UPDATE
2023-11-23T09:20:14Z
External Id
SAMEA114704062
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC first public
2023-11-23T09:20:14Z
INSDC last update
2023-11-23T09:20:14Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
164bb96d-58d1-42e1-9c94-80d65ec326bd
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
broad-scale environmental context
aquatic biome
collected by
JASPER MERIJN DE GOEIJ | BENJAMIN MUELLER
collecting institution
University of Amsterdam, Institute for Biodiversity and Ecosystem Dyamics, Department of Freshwater and Marine Ecology
collection date
2021-01-25
completeness score
85.89
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.35
depth
13.5
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Curacao
geographic location (latitude)
12.12
geographic location (longitude)
-68.97
geographic location (region and locality)
Piscadera Bay | Station Buoy #1
habitat
coral fringing reef, slope, cryptic habitat, on coral reef rock (calcium carbonate)
host life stage
adult
host scientific name
Chondrilla caribensis
host taxid
1336846
identified by
JASPER MERIJN DE GOEIJ | BENJAMIN MUELLER
identifier_affiliation
University of Amsterdam, Institute for Biodiversity and Ecosystem Dyamics, Department of Freshwater and Marine Ecology
investigation type
metagenome-assembled genome
isolation_source
Sponge: Chondrilla caribensis
local environmental context
marine coral reef biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
45
organism part
WHOLE ORGANISM
project name
ASG
relationship
benificial
sample derived from
SAMEA114704014
sample name
164bb96d-58d1-42e1-9c94-80d65ec326bd
scientific_name
uncultured candidatus Porisulfidus sp.
sequencing method
Pacbio Sequel II
specimen id
GHC0000074
specimen voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
odChoCari5.Porisulfidus_sp_1