59dc478a-54d4-49df-8b01-798af45e7a49-asg-MAGScoT_cleanbin_000032
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2024-08-05
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
59dc478a-54d4-49df-8b01-798af45e7a49
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
THIERRY PEREZ
collecting institution
CNRS
collection date
2021-03-23
common name
commercial sponge
completeness score
85.96
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.88
depth
10-15
environmental medium
adult sponge tissue
geographic location (country and/or sea)
France
geographic location (latitude)
43.16
geographic location (longitude)
5.60
geographic location (region and locality)
La Ciotat
habitat
semi-dark cave
host life stage
adult
host scientific name
Spongia officinalis
host sex
not applicable
host taxid
252964
identified_by
THIERRY PEREZ
identifier_affiliation
CNRS
investigation type
metagenome-assembled genome
isolation_source
Sponge: Spongia officinalis
local environmental context
marine benthic biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
44
organism part
WHOLE ORGANISM
project name
ASG
relationship
Heterotrophic Microbiome (Mostly)
sample derived from
SAMEA115905044
sample name
59dc478a-54d4-49df-8b01-798af45e7a49
scientific_name
uncultured candidatus Porisulfidus sp.
sequencing method
Pacbio Sequel II
specimen_id
GHC0000180
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
odSpoOffi1.Porisulfidus_sp_1