d09194bb-398a-4a11-af67-6338b7a72741-asg-MAGScoT_cleanbin_000144
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2024-08-12
GAL
Queen Mary University of London
GAL_sample_id
not provided
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
d09194bb-398a-4a11-af67-6338b7a72741
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
not provided
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Michael J Boyle
collecting institution
former Smithsonian Institute
collection date
2021-07-01
completeness score
95.6
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
1.1
depth
0.5
elevation
0
environmental medium
adult annelid tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
27.46
geographic location (longitude)
-80.31
geographic location (region and locality)
FLORIDA | FORT PIERCE | INDIAN LAGOON | MANGROOVE
habitat
between rock and dead oyster bed crevices
host life stage
adult
host scientific name
Themiste lageniformis
host sex
female
host taxid
216211
identified_by
Michael J Boyle
identifier_affiliation
Former Smithsonian Institute
investigation type
metagenome-assembled genome
isolation_source
Annelid: Themiste lageniformis
local environmental context
marine biome
metagenomic source
annelid metagenome
number of standard tRNAs extracted
44
organism part
WHOLE ORGANISM
original collection location
USA | FLORIDA | FORT PIERCE | INDIAN LAGOON | MANGROOVE
original geographic location (latitude)
27.471679
original geographic location (longitude)
-80.306737
project name
ASG
sample collection method
Manually
sample derived from
SAMEA115925830
sample name
d09194bb-398a-4a11-af67-6338b7a72741
scientific_name
Candidatus Eisenbacteria bacterium
sequencing method
Pacbio Sequel II
specimen_id
QMOUL0000300
specimen_voucher
NOT_PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
wgTheLage1.Eisenbacteria_3