99de6d1c-9561-45ae-baf3-e78c13e602bd-asg-MAGScoT_cleanbin_000040
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2025-03-27
GAL
Queen Mary University of London
GAL_sample_id
not provided
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
99de6d1c-9561-45ae-baf3-e78c13e602bd
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
barcoding center
not provided
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
GABRIELLA BERMAN | KIIRAH GREEN | PAUL PROCTOR
collecting institution
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
collection date
2022-02-05
completeness score
81.48
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.93
depth
500
environmental medium
adult annelid tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
32.66
geographic location (longitude)
-117.37
geographic location (region and locality)
California | offshore San Diego
habitat
seafloor
host life stage
adult
host scientific name
Aphrodita longipalpa
host sex
not collected
host taxid
868023
identified_by
GREG ROUSE
identifier_affiliation
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
investigation type
metagenome-assembled genome
isolation_source
Annelid: Aphrodita longipalpa
local environmental context
marine benthic biome
metagenomic source
annelid metagenome
number of standard tRNAs extracted
40
organism part
WHOLE ORGANISM
project name
ASG
proxy voucher
SIO:BIC:A14143
proxy voucher url
https://sioapps.ucsd.edu/collections/bi/catalog/A14143/
sample collection device or method
otter trawl
sample derived from
SAMEA117929550
sample name
99de6d1c-9561-45ae-baf3-e78c13e602bd
scientific_name
Candidatus Altimarinota bacterium
sequencing method
Pacbio Sequel II
specimen_id
QMOUL0000160
specimen_voucher
NOT_APPLICABLE
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
wpAphLong1.Gracilibacteria_1
voucher institution url
https://ror.org/04v7hvq31