36b39734-76b9-44b8-9eec-412a3e46830c-asg-MAGScoT_cleanbin_000052
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-11-22T09:45:07Z
ENA-LAST-UPDATE
2023-11-22T09:45:07Z
External Id
SAMEA114659162
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC first public
2023-11-22T09:45:07Z
INSDC last update
2023-11-22T09:45:07Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
36b39734-76b9-44b8-9eec-412a3e46830c
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)
broad-scale environmental context
aquatic biome
collected by
MAYA BRITSTEIN
collecting institution
University of Haifa
collection date
2013-12-23
completeness score
83.83
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
0.12
depth
20
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Israel
geographic location (latitude)
29.50
geographic location (longitude)
34.92
geographic location (region and locality)
Eilat
habitat
coral reef
host life stage
adult
host scientific name
Theonella swinhoei
host taxid
37505
identified by
ILIA BURGSDORF | RINAT BAR SHALOM
identifier_affiliation
University of Haifa Israel
investigation type
metagenome-assembled genome
isolation_source
Sponge: Theonella swinhoei
local environmental context
marine coral reef biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
44
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA114659106
sample name
36b39734-76b9-44b8-9eec-412a3e46830c
scientific_name
uncultured candidatus Porisulfidus sp.
sequencing method
Pacbio Sequel II
specimen id
GHC0000232
specimen voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.3.2); GTDB (release 2014)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
odTheSwin1.Porisulfidus_sp_1