bb387696-79a2-456d-949d-76b9c9db5e31-asg-MAGScoT_cleanbin_000037
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-03-12
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
bb387696-79a2-456d-949d-76b9c9db5e31
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Manuel Maldonado
collecting institution
CEAB-CSIC
collection date
2021-02-01
completeness score
89.8
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.57
depth
11
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Spain
geographic location (latitude)
41.67
geographic location (longitude)
2.80
geographic location (region and locality)
Girona|Blanes
habitat
rocky bottom
host life stage
adult
host scientific name
Sarcotragus fasciculatus
host sex
not applicable
host taxid
1234657
identified_by
Manuel Maldonado
identifier_affiliation
CEAB-CSIC
investigation type
metagenome-assembled genome
isolation_source
Sponge: Sarcotragus fasciculatus
local environmental context
marine benthic biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
42
organism part
WHOLE ORGANISM
project name
ASG
relationship
beneficial
sample derived from
SAMEA117815066
sample name
bb387696-79a2-456d-949d-76b9c9db5e31
scientific_name
uncultured candidatus Porisulfidus sp.
sequencing method
Pacbio Sequel II
specimen_id
GHC0000186
specimen_voucher
NOT PROVIDED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
odSarFasc1.Porisulfidus_sp_1