cb3cc8ba-4886-431b-acd6-e38eb799315d-asg-MAGScoT_cleanbin_000121
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-02-26
GAL
Geomar Helmholtz Centre
GAL_sample_id
NOT PROVIDED
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
cb3cc8ba-4886-431b-acd6-e38eb799315d
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Andia Chaves Fonnegra
collecting institution
FLORIDA ATLANTIC UNIVERSITY
collection date
2024-02-01
completeness score
62.07
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.0
depth
18.6
environmental medium
adult sponge tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
26.16
geographic location (longitude)
-80.08
geographic location (region and locality)
Florida | Fort Lauderdale | BC3
habitat
coral reef
host life stage
adult
host scientific name
Aplysina insularis
host sex
not applicable
host taxid
289402
identified_by
Andia Chaves Fonnegra
identifier_affiliation
FLORIDA ATLANTIC UNIVERSITY
investigation type
metagenome-assembled genome
isolation_source
Sponge: Aplysina insularis
local environmental context
marine biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
28
organism part
WHOLE ORGANISM
project name
ASG
relationship
unknown
sample derived from
SAMEA117774874
sample name
cb3cc8ba-4886-431b-acd6-e38eb799315d
scientific_name
uncultured candidatus Porisulfidus sp.
sequencing method
Pacbio Sequel II
specimen_id
GHC0000337
specimen_voucher
NOT COLLECTED
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
odAplInsu1.Porisulfidus_sp_1