f17f5a2b-a5d1-4ec2-a2fa-47581a9197b3-asg-MAGScoT_cleanbin_000079
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
GAL
University of British Columbia
GAL_sample_id
not provided
INSDC center name
Tree of Life Programme
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
f17f5a2b-a5d1-4ec2-a2fa-47581a9197b3
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG
barcoding center
UNIVERSITY OF RHODE ISLAND
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected_by
JOHANA ROTTEROVA
collecting institution
UNIVERSITY OF RHODE ISLAND
collection date
2022-09-02
completeness score
59.41
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
1.98
culture_or_strain_id
FARO3 strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
depth
1899-12-30
environmental medium
ciliate culture
geographic location (country and/or sea)
USA
geographic location (latitude)
41.49
geographic location (longitude)
-71.42
geographic location (region and locality)
RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
habitat
marine
host life stage
vegetative cell
host scientific name
Trimyema sp. strain FARO3
host taxid
2980488
identified_by
ANNA SCHRECENGOST
identifier_affiliation
UNIVERSITY OF RHODE ISLAND
investigation type
metagenome-assembled genome
isolation_source
Ciliate: Trimyema sp. strain FARO3
local environmental context
marine biome
metagenomic source
ciliate metagenome
number of standard tRNAs extracted
31
organism part
WHOLE ORGANISM
original collection date
2019
original collection location
PORTUGAL | QUELFES
original geographic location (latitude)
37.030389
original geographic location (longitude)
-7.808889
project name
ASG
sample collection device or method
hand collected into a 50 ml tube
sample derived from
SAMEA114409385
sample name
f17f5a2b-a5d1-4ec2-a2fa-47581a9197b3
scientific_name
Candidatus Gracilibacteria bacterium
sequencing method
Pacbio Sequel II
specimen_id
UOBC0000034
specimen_voucher
not provided
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
piTriSpec1.Candidatus_Gracilibacteria_1