bff738c7-9683-4f94-b287-c2cb1e0b670a-asg-MAGScoT_cleanbin_000071
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
GAL
Geomar Helmholtz Centre
GAL_sample_id
not provided
INSDC center name
Tree of Life Programme
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
bff738c7-9683-4f94-b287-c2cb1e0b670a
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected by
RODRIGO COSTA
collecting institution
UNIVERSITY OF LISBON AND CENTRE OF MARINE SCIENCES
collection date
2021-06-08
common name
commercial sponge
completeness score
94.78
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
3.36
depth
16
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Portugal
geographic location (latitude)
36.98
geographic location (longitude)
7.99
geographic location (region and locality)
Pedra da Greta
habitat
Coastal Seawater
host life stage
adult
host scientific name
Spongia officinalis
host taxid
252964
identified by
JORGE GONÇALVES
identifier_affiliation
CENTRE OF MARINE SCIENCES
investigation type
metagenome-assembled genome
isolation_source
Sponge: Spongia officinalis
local environmental context
marine benthic biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
48
organism part
WHOLE ORGANISM
project name
ASG
relationship
Heterotrophic Microbiome (Mostly)
sample derived from
SAMEA114406238
sample name
bff738c7-9683-4f94-b287-c2cb1e0b670a
scientific_name
Candidatus Binatia bacterium
sequencing method
Pacbio Sequel II
specimen id
GHC0000125
specimen voucher
not provided
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
ani_screen
tolid
odSpoOffi2.Candidatus_Binatia_2