38dfdaa7-23c9-415c-95bd-71b6b8237c91-asg-MAGScoT_cleanbin_000091
16S recovery software
PROKKA (version 1.14.6)
16s recovered
Yes
ENA first public
2025-03-13
GAL
Nova Southeastern University
GAL_sample_id
not provided
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
38dfdaa7-23c9-415c-95bd-71b6b8237c91
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG (version 0.3)
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
JOHN PETTINGILL
collecting institution
NOVA SOUTHEASTERN UNIVERSITY
collection date
2020-07-30
completeness score
76.5
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
0.85
depth
1.5
environmental medium
adult chlorophyte tissue
geographic location (country and/or sea)
USA
geographic location (latitude)
25.03
geographic location (longitude)
-80.50
geographic location (region and locality)
Florida | Key Largo | Dove Cove
habitat
Limestone Mangrove Channel
host life stage
not applicable
host scientific name
Penicillus capitatus
host sex
not applicable
host taxid
170435
identified_by
JOHN PETTINGILL
identifier_affiliation
NOVA SOUTHEASTERN UNIVERSITY
investigation type
metagenome-assembled genome
isolation_source
Chlorophyte: Penicillus capitatus
local environmental context
marine biome
metagenomic source
algae metagenome
number of standard tRNAs extracted
35
organism part
WHOLE ORGANISM
project name
ASG
sample derived from
SAMEA117820338
sample name
38dfdaa7-23c9-415c-95bd-71b6b8237c91
scientific_name
Candidatus Altimarinota bacterium
sequencing method
Pacbio Sequel II
specimen_id
NSU0025201
specimen_voucher
NSU25201
symbiont
N
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
ucPenCapi1.Altimarinota_3