bf105e18-a386-40c4-b2e0-178aac250aa7-asg-MAGScoT_cleanbin_000019
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2025-04-11
GAL
The Sainsbury Laboratory
GAL_sample_id
not provided
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
bf105e18-a386-40c4-b2e0-178aac250aa7
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
not provided
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
Bernard Bouffinier | Alain Gérault
collecting institution
MNHN CONCARNEAU
collection date
2021-11-05
completeness score
64.97
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
1.85
environmental medium
adult lichen tissue
geographic location (country and/or sea)
France
geographic location (latitude)
48.23
geographic location (longitude)
-4.57
geographic location (region and locality)
Finistère | CAMARET-SUR-MER | Pointe de Pen-Hir
habitat
Marine rocky shore
host life stage
not applicable
host scientific name
Caloplaca littorea
host sex
not applicable
host taxid
2972760
identified_by
Bernard Bouffinier | Alain Gérault
identifier_affiliation
MNHN CONCARNEAU
investigation type
metagenome-assembled genome
isolation_source
Lichen: Caloplaca littorea
local environmental context
marine biome
metagenomic source
lichen metagenome
number of standard tRNAs extracted
41
organism part
WHOLE ORGANISM
project name
ASG
sample collection device or method
COLLECTED BY HAND
sample derived from
SAMEA117993917
sample name
bf105e18-a386-40c4-b2e0-178aac250aa7
scientific_name
Candidatus Saccharimonadales bacterium
sequencing method
Pacbio Sequel II
specimen_id
SL0000013
specimen_voucher
not provided
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
glCalLitt1.Saccharimonadales_1