1a6e15b8-d5fc-4fc4-a70e-6a98bd738cda-asg-MAGScoT_cleanbin_000037
16S recovered
No
16S recovery software
PROKKA (version 1.14.6)
ENA first public
2025-04-11
GAL
University of California
GAL_sample_id
not provided
INSDC center name
Tree of Life Programme
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
1a6e15b8-d5fc-4fc4-a70e-6a98bd738cda
assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software
metaMDBG (version 0.3)
barcoding center
not provided
binning parameters
coverage; graph
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
broad-scale environmental context
aquatic biome
collected_by
LAURA PRIETO
collecting institution
ICMAN-CSIC
collection date
2022-09-19
completeness score
66.74
completeness software
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
contamination score
5.2
environmental medium
adult jellyfish tissue
geographic location (country and/or sea)
Spain
geographic location (latitude)
36.53
geographic location (longitude)
-6.21
geographic location (region and locality)
C√ÅDIZ | PUERTO REAL | ICMAN-CSIC
habitat
LABORATORY
host life stage
juvenile
host scientific name
Cotylorhiza tuberculata
host sex
other
host taxid
323337
identified_by
LAURA PRIETO
identifier_affiliation
ICMAN-CSIC
investigation type
metagenome-assembled genome
isolation_source
Jellyfish: Cotylorhiza tuberculata
local environmental context
marine biome
metagenomic source
jellyfish metagenome
number of standard tRNAs extracted
36
organism part
WHOLE ORGANISM
project name
ASG
sample collection method
Selected with pipettor from aquarium
sample derived from
SAMEA117994215
sample name
1a6e15b8-d5fc-4fc4-a70e-6a98bd738cda
scientific_name
Thermoplasmatota archaeon
sequencing method
Pacbio Sequel II
specimen_id
UCALI0000709
specimen_voucher
NOT_COLLECTED
tRNA extraction software
PROKKA (version 1.14.6)
taxonomic classification
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic identity marker
taxonomic novelty determined using RED
tolid
jsCotTube1.Thermoplasmatota_archaeon_1