6b508bb3-31ce-4f4f-8d88-ad7b0e8f6706-asg-MAGScoT_cleanbin_000039
16S recovered
Yes
16S recovery software
PROKKA (version 1.14.5)
ENA-FIRST-PUBLIC
2023-11-16T09:23:30Z
ENA-LAST-UPDATE
2023-11-16T09:23:30Z
External Id
SAMEA114624596
GAL
Geomar Helmholtz Centre
GAL_sample_id
not provided
INSDC center name
Tree of Life Programme
INSDC first public
2023-11-16T09:23:30Z
INSDC last update
2023-11-16T09:23:30Z
INSDC status
public
MAG coverage software
Minimap2 (version 2.24-r1122)
Submitter Id
6b508bb3-31ce-4f4f-8d88-ad7b0e8f6706
assembly quality
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly software
metaMDBG
binning parameters
coverage; graph; hic-mapping
binning software
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
broad-scale environmental context
aquatic biome
collected by
RODRIGO COSTA
collecting institution
UNIVERSITY OF LISBON AND CENTRE OF MARINE SCIENCES
collection date
2021-06-08
completeness score
94.77
completeness software
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score
3.36
depth
16
environmental medium
adult sponge tissue
geographic location (country and/or sea)
Portugal
geographic location (latitude)
36.98
geographic location (longitude)
7.99
geographic location (region and locality)
Pedra da Greta
habitat
Coastal Seawater
host life stage
adult
host scientific name
Sarcotragus spinosulus
host taxid
1088795
identified by
JORGE GONÇALVES
identifier_affiliation
CENTRE OF MARINE SCIENCES
investigation type
metagenome-assembled genome
isolation_source
Sponge: Sarcotragus spinosulus
local environmental context
marine benthic biome
metagenomic source
sponge metagenome
number of standard tRNAs extracted
50
organism part
WHOLE ORGANISM
project name
ASG
relationship
Heterotrophic Microbiome (Mostly)
sample derived from
SAMEA114624520
sample name
6b508bb3-31ce-4f4f-8d88-ad7b0e8f6706
scientific_name
Candidatus Binatia bacterium
sequencing method
Pacbio Sequel II
specimen id
GHC0000124
specimen voucher
not provided
tRNA extraction software
PROKKA (version 1.14.5)
taxonomic classification
GTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity marker
taxonomic classification defined by topology and ANI
tolid
odSarSpin1.Binatia_1