ME-04may21-LR-249: freshwater MAG from Lake Medard
Candidatus Fonsibacter sp. assembled from Lake Medard
ENA-FIRST-PUBLIC
2024-07-23T12:49:34Z
ENA-LAST-UPDATE
2024-07-23T12:49:34Z
External Id
SAMEA115861881
INSDC center name
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public
2024-07-23T12:49:34Z
INSDC last update
2024-07-23T12:49:34Z
INSDC status
public
Submitter Id
ME-04may21-LR-249
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
Flye
binning parameters
coverage and kmer
binning software
Metabat2
broad-scale environmental context
freshwater biome
collection date
2021-05-04
completeness score
60.24
completeness software
CheckM
contamination score
3.61
environmental medium
artificial lake
geographic location (country and/or sea)
Czechia
geographic location (latitude)
50.166667
geographic location (longitude)
12.583333
isolation_source
freshwater lake
local environmental context
freshwater lake biome
metagenomic source
freshwater metagenome
project name
PRJEB35640
sample derived from
ERS20608331
sample name
ME-04may21-LR-249
scientific_name
Candidatus Fonsibacter sp.
taxonomic identity marker
multi-marker