LE-05nov19-195: freshwater MAG from Lake Lugano
Candidatus Fonsibacter sp. assembled from Lake Lugano
ENA-FIRST-PUBLIC
2024-07-23T12:49:33Z
ENA-LAST-UPDATE
2024-07-23T12:49:33Z
External Id
SAMEA115861828
INSDC center name
BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public
2024-07-23T12:49:33Z
INSDC last update
2024-07-23T12:49:33Z
INSDC status
public
Submitter Id
LE-05nov19-195
assembly quality
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software
Megahit
binning parameters
coverage and kmer
binning software
Metabat2
broad-scale environmental context
freshwater biome
collection date
2019-11-05
completeness score
67.63
completeness software
CheckM
contamination score
0.11
environmental medium
natural lake
geographic location (country and/or sea)
Italy
geographic location (latitude)
45.983333
geographic location (longitude)
8.966667
isolation_source
freshwater lake
local environmental context
freshwater lake biome
metagenomic source
freshwater metagenome
project name
PRJEB35640
sample derived from
ERS6344544
sample name
LE-05nov19-195
scientific_name
Candidatus Fonsibacter sp.
taxonomic identity marker
multi-marker