HGSVC3 - Verkko De Novo Assemblies
The Verkko assembly fasta files produced by the Human Genome Structural Variation Consortium (HGSVC) (https://www.hgsvc.org/) in this repository include the whole assembled genomes, except for mitochondrial DNA and rDNA sequences, where only representative sequences are included. The full dataset can be accessed from: -Batch 1: https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/HGSVC3/working/20230818_verkko_batch1/assemblies/, -Batch 2: https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/HGSVC3/working/20230927_verkko_batch2/assemblies/, -Batch 3: https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/HGSVC3/working/20240201_verkko_batch3/assemblies/. Three samples, HG01573, HG02018, and NA19129, had more than 1,260 assembly contigs (the maximum number of contigs allowed for each assembly fasta file)  when concatenated. We used a contig size threshold of 105 kbp for the "unassigned" contigs fasta file to meet this criterion. ATTENTION: HG00514 has two assemblies uploaded. Please use the most recent one, GCA_964659605