High-confidence mitochondrial read alignments of liver cancer samples in four mouse species
This BioProject contains the BAM files with the mitochondrial reads used in Daunesse et al. 2025 for heteroplasmy detection across four mouse strains: Mus musculus domesticus (C57BL/6J), Mus musculus castaneus (CAST/EiJ), Mus musculus musculus (C3H/HeJ), and Mus caroli (CAROLI/EiJ) in liver cancer samples. The dataset includes both standard and shift-mapped alignments. The shift-mapping approach repositions the linear start of the mitochondrial genome by 8,150 bp to improve read alignment at artificial breakpoints, reducing coverage biases.