Evaluation of Oxford Nanopore Technologies V14 kit for genomic epidemiology of outbreak-associated bacterial isolates in the clinical setting
In this study, we benchmarked expected performance parameters such as genome assembly quality, genotyping (MLST, cgMLST), SNP profiling and antimicrobial resistance and virulence prediction, against WGS data obtained routinely by Illumina MiSeq sequencing of the same isolates.