WGS of Bos taurus (cow)
https://doi.org/10.3390/ani13172776  Cows are one of the oldest livestock that are bred for both meat and milk. There are only two local cow breeds in Latvia—Latvian Brown and Latvian Blue—which, until now, have not been genetically characterized. This study examined the genetic background of both local breeds in Latvia and identified genetic factors associated with mastitis, a common inflammation of the mammary gland that affects animal welfare and the quality of milk. Whole genome sequencing was performed on blood and semen samples, and the results from the obtained data show that both breeds had similar levels of genetic diversity compared with other breeds. The Latvian Blue breed showed a higher genetic variance compared with the Latvian Brown breed. Specific mastitis-associated genome regions were identified for each breed. This study provides fundamental insights into the genetics of local Latvian cow breeds and provides the first insight into the hereditary factors of mastitis in dairy cows. It may also facilitate the development of genetic tests to aid breeders in their attempts to maintain and improve local and foreign Latvian cattle breeds.