Genome-wide SNP genotyping of Plasmodium falciparum across Mali reveals linked selective sweeps driven by sickle haemoglobin and antimalarial drug pressure
The goal of this project was to understand the genomic epidemiology of malaria across Mali. We used genome-wide SNP barcodes based on MIPs to perform relatedness, population structure, complexity of infection and selection analyses using samples collected from malaria patients in health districts in 2023 and 2020