Raw amplicon sequencing data of 36 bayberry samples from Wenzhou Academy of Agricultural Sciences
We investigate the fruit microbota of two bayberry cultivars (M. rubra cv. Dongkui and M. rubra cv. Dingao) at harvest maturity stage, with samples collected from three distinct orchards by high-throughput sequencing technology. This study provides a theoretical foundation for maintaining the quality and controlling diseases of bayberry fruits postharvest, contributing to the development of green and efficient biological control strategies.