Functional inhibition of core spliceosomal machinery activates intronic premature cleavage and polyadenylation of pre-mRNAs
To investigate the extent to which U6 inhibits premature cleavage and polyadenylation at the transcriptome level.  we performed 3'-seq in control, U1 and U6-AMO treated sample using lexogen 3'-seq kit (Cat. 016.24) that could accurately quantify the global PAS usage. Indeed, we found both U1 and U6 could globally suppress intronic PCPA. Overall design: we performed 3'-seq in control, U1 and U6-AMO treated sample using lexogen 3'-seq kit (Cat. 016.24). Five cell lines were used in our study, namely, HeLa cells, HEK-293 cells, SW480, NIH3T3, Neuro-2A