Shotgun metagenomics sequences of goat manure from an integrated crop-livestock system
Microbial communities linked to livestock manure inputs and rhizosphere habitats can influence nutrient cycling and antimicrobial resistance dissemination. To enable comparative analyses of manure- and rhizosphere-associated microbiomes, we generated and curated a 12-sample shotgun metagenomics dataset of goat manure (GM) collected from an integrated crop-livestock system.