Multi-marker fish eDNA metabarcoding comparison: Illumina vs Nanopore
This SRA contains raw data sequencing files from Illumina and Nanopore sequencing platforms. 20 samples (from mock communities, mesocosm eDNA and field eDNA) were sequenced with both platforms (one kit for Illumina and two kits for Nanopore) with two sets of markers targeting mitochondrial genes (12S rRNA and Cytochrome Oxidase C subunit I.