Shotgun metagenomic profiling of bovine milk after antimicrobial dry cow therapy (DCT)
This dataset was used to investigate the impact of antimicrobial dry cow therapy on the milk microbiome and resistome in dairy cows. Shotgun metagenomic sequencing was performed using Illumina short-read (21 samples) or Illumina and Oxford Nanopore Technologies (ONT) long-read (10 samples) platforms.