accurate inbreeding estimation in Penaeus vannamei (Pacific white shrimp) (PRJCA050239)
This study aims to optimize ROH detection parameters for accurate inbreeding estimation in Penaeus vannamei (Pacific white shrimp) using whole-genome resequencing data. Key parameters such as SNP density, inter-marker gap, and minimum ROH length are evaluated to address challenges like high heterozygosity and genome fragmentation. The optimized framework enhances inbreeding estimates and cross-study comparability in aquaculture species.