GSE117988
scRNAseq reveals mechanisms of Merkel cell carcinoma acquired immunotherapy resistance [1]
Serial blood draws from a single patient and serial tumor biopsies from the same patient  with metastatic Merkel cell polyomavirus Merkel cell carcinoma, who was treated with cellular immunotherapy targeting MCPyV (autologous endogenous T cell therapy) followed by checkpoint inhibitors (anti-PD1 and anti-CTLA4).  The patient had a 22 month clinical response followed by late/acquired resistance.  We performed scRNAseq using the 10x genomics 3'' Chromium expression assay to determine potential mechanisms contributing to immunotherapy response and late resistance Overall design: Serial blood draws from four time points, serial tumor biopsies from two time points - single cell digests were viably preserved, comparisons were performed on a within tissue basis, discovery patient for associated manuscript