PRJNA473252
Eleusine coracana subsp. africana synthetic B transcriptome
E. indica chloroplast and mitochondrial genes were removed from the E. africana reads. Then, the filtered E. africana reads were mapped to E. indica transcriptome (unique CDS) using bowtie2 and then the mapped and unmapped reads were extracted using samtools separately. The mapped and unmapped reads were filtered and reads length below 90 were discarded.