ena-STUDY-INSTITUT PASTEUR-24-10-2018-12:17:00:810-281
A novel Xinfangfangia species isolated from soil amended with humic acid
The source soil had been amended with humic acid and continuously used for the cultivation of worms used for fish bait. It is still conceivable that the source of the strains is from the humic acid amendment, although all attempts to isolate the novel phenotypes from the humic acid source have failed. The two strains were identical based on morphology, growth rate, and subsequently by 16S rRNA gene sequences but showed differences in genomic fingerprint patterns generated by rep-PCRs. Phylogenetic analysis based on the 16S rRNA gene revealed a placement of the strain in a distinct cluster with Xinfangfangia soli (97.2% 16S rRNA gene sequence similarity) and in close proximity to the genus Falsirhodobacter with highest 16S rRNA gene sequence similarity of 95.3 % to the type strain of Falsirhodobacter deserti and also to the genus Gemmobacter with highest gene sequence similarity to the type strain of Gemmobacter intermedius. Sequence similarities to all other type strains were below 95.0 %. The chemotaxonomic analysis showed a clear similarity to the genus Xinfangfangia. The main cellular fatty acids of the strain were C18:1 ?7c and C18:0. The major quinone was ubiquinone Q-10. Phosphatidylethanolamine, phosphatidylmonomethylethanolamine, phosphatidylglycerol and phosphatidylcholine were predominant in the polar lipid profile. The polyamine pattern contained the major compound spermidine and moderate amounts of putrescine and cadaverine. The diamino acid of the peptidoglycan is meso-diaminopimelic acid. Based on phylogenetic, chemotaxonomic, and phenotypic analyses we propose a new species of the genus Xinfangfangia.
The source soil had been amended with humic acid and continuously used for the cultivation of worms used for fish bait. It is still conceivable that the source of the strains is from the humic acid amendment, although all attempts to isolate the novel phenotypes from the humic acid source have failed. The two strains were identical based on morphology, growth rate, and subsequently by 16S rRNA gene sequences but showed differences in genomic fingerprint patterns generated by rep-PCRs. Phylogenetic analysis based on the 16S rRNA gene revealed a placement of the strain in a distinct cluster with Xinfangfangia soli (97.2% 16S rRNA gene sequence similarity) and in close proximity to the genus Falsirhodobacter with highest 16S rRNA gene sequence similarity of 95.3 % to the type strain of Falsirhodobacter deserti and also to the genus Gemmobacter with highest gene sequence similarity to the type strain of Gemmobacter intermedius. Sequence similarities to all other type strains were below 95.0 %. The chemotaxonomic analysis showed a clear similarity to the genus Xinfangfangia. The main cellular fatty acids of the strain were C18:1 ?7c and C18:0. The major quinone was ubiquinone Q-10. Phosphatidylethanolamine, phosphatidylmonomethylethanolamine, phosphatidylglycerol and phosphatidylcholine were predominant in the polar lipid profile. The polyamine pattern contained the major compound spermidine and moderate amounts of putrescine and cadaverine. The diamino acid of the peptidoglycan is meso-diaminopimelic acid. Based on phylogenetic, chemotaxonomic, and phenotypic analyses we propose a new species of the genus Xinfangfangia.