ena-STUDY-czbiohub-27-01-2019-00:38:36:408-1042
IGGdb: integrated genomes from the gut microbiome and other environments
MAGs were assembled from 3,810 human gut metagenomes from 15 different studies from geographically and phenotypically diverse human subjects. Metagenomes were assembled with MegaHIT and MAGs were constructed by binning contigs per-sample on the basis of nucleotide composition and read-depth. This was performed using four existing tools: Maxbin, MetaBAT, CONCOCT, DAS Tool. MAGs were screened for contamination using a custom pipeline.
MAGs were assembled from 3,810 human gut metagenomes from 15 different studies from geographically and phenotypically diverse human subjects. Metagenomes were assembled with MegaHIT and MAGs were constructed by binning contigs per-sample on the basis of nucleotide composition and read-depth. This was performed using four existing tools: Maxbin, MetaBAT, CONCOCT, DAS Tool. MAGs were screened for contamination using a custom pipeline.