ena-STUDY-University of Ljubljana, Faculty of Medicine, Institute of Microbiology and Immunology-18-09-2019-10:25:13:290-71
Characterisation of Francisella tularensis isolate in Slovenia with NGS
We successfully obtained one F. tularensis isolate from a lymph node aspirate from the patient by culture on chocolate agar. Whole genome was sequenced using an Ion 316 chip loaded into Ion Torrent PGM benchtop sequencer, After multiple alignments (mapping to the reference genome and de novo assembly) we have obtained 1830511 base pairs.
We successfully obtained one F. tularensis isolate from a lymph node aspirate from the patient by culture on chocolate agar. Whole genome was sequenced using an Ion 316 chip loaded into Ion Torrent PGM benchtop sequencer, After multiple alignments (mapping to the reference genome and de novo assembly) we have obtained 1830511 base pairs.