PRJNA793760
Whole-Transcriptome data of the mutant zj-es and its wild type ZJ22
the mutant and wild-type rice were sequenced for whole transcriptome. By comparison with the control groups, a total of 10085 mRNAs, 1253 lncRNAs, and 614 miRNAs were identified as significantly differentially expressed genes (DEGs) using RNA sequencing, respectively. By weighted gene co-expression network analysis (WGCNA) analysis, we found that turquoise module of the 18 identified modules may be related to early senescence, so we constructed co-expression regulatory network analysis of turquoise module. KEGG enrichment analysis showed that most of the DEmRNAs and targets of DElncRNAs and DEmiRNAs were involved in various pathways, such as peroxisome, autophagy-other eukaryotes, phagosome, endocytosis and ubiquitin mediated proteolysis. Finally, a total of 14 lncRNA were predicted to bind to 7 miRNAs and compete with 13 mRNAs for miRNA binding sites. These mRNAs were related to peroxisome, autophagy-other eukaryotes, phagosome, endocytosis and ubiquitin mediated proteolysis. On the basis of these results, it is more beneficial to study the potential function of mRNAs and ncRNAs in inducing early senescence.