GSE130243
Quantitative Analysis of Wild Type and scrib mutant Drosophila wing imaginal discs Transcriptomes at different time points
Purpose: There are two goals of this study. Firstly, we want to figure out the transcriptomic differences between control and scrib¹ mutant wing imaginal discs.  Secondly, we aim to investigate the transcriptomic changes as the scrib¹ mutant tumor develop over time. Methods: Total RNA was used to generate cDNA libraries and 150bp paired-end sequencing on Illumina HiSeq platform were performed by Novogene. Cleaned raw reads were mapped to the reference genome using STAR and counts are generated by featuresCounts available in Subread package. Count normalization was performed using edgeR. Overall design: mRNA profiles of 4, 5-day wild type and 4, 5, 6, 8, 10, 12, 14-day scrib mutant wing imaginal discs were generated by Next Generation Sequencing, in triplicate or quadruplicate, using Illumina HiSeq.