UCB MAQC
Evaluation of Statistical Methods for Normalization and Differential Expression in mRNA-Seq Experiments
A study to evaluate the effect of flowcell and library preparation on the results of transcriptome sequencing using the Illumina Genome Analyzer.  The study has two components.  (1) Two different samples were spread over 2 different flowcells. We obtained data with and without using the phiX control lane.  (2) One sample was prepared in four different library preparations that were spread over 2 different flowcells.