WGP_arabidopsis
Whole Genome Profiling on Arabidopsis
This data is linked to the paper "SEQUENCE-BASED PHYSICAL MAPPING OF COMPLEX GENOMES BY WHOLE GENOME PROFILING" by Van Oeveren et al.  It describes the use of Illumina GA reads on restriction fragments of BAC clones to characterize these BACs and subsequently build BAC contigs from them (as an accurate and cost-efficient alternative to BAC fingerprinting/SNaPshot).  Scripts to analyze this data are available at the Keygene website: http://www.keygene.com/research/WGPpublication.php
Creating a physical BAC map from short sequence tags