GSE113660
UMI-count modeling and differential expression analysis for single-cell RNA sequencing
Single cell RNA-seq of the human alveolar rhabdomyosarcoma cell line Rh41. We also inlcude a bulk RNA-seq study of unsorted and sorted cells using CD44 as a marker Overall design: Single cell RNA-seq of Rh41 using the 10x Genomics. For bulk RNA-seq, there are three batches, each corresponds to three samples: sorted CD44 high, sorted CD44 low and unsorted. C2, C6, C7: CD44high subspopulation (Batch 1/2/3); C3, C4, C5: CD44low subpopulation (Batch 1/2/3); C1, C8, C9: CD44 unsorted (Batch 1/2/3)