ena-STUDY-Sheng Wang-25-11-2021-09:43:04:111-100
The profile of gut microbiome in Lung adenocarcinoma patients
Background: Lung adenocarcinoma (LUAD) is one of the most predominant subtypes of lung cancer. The gut microbiome plays a vital role in the pathophysiological processes of various diseases, including cancer.Methods: In the study, 100 individuals were enrolled. 75 stool and blood samples were analyzed with 16s-rRNA sequencing and metabolomics, (30 from healthy individuals(H); 45 from LUAD patients). In addition, 25 stool samples were analyzed with metagenomics (10 from H; 15 from LUAD). The linear discriminant analysis (LDA) effect size (LefSe) and logistic regression analysis were applied to identified biomarker's taxa and to develop a diagnostic model. The diagnostic power of the model was estimated with the receiver operating characteristic curve (ROC) by comparing the area under the ROC (AUC). The correlation between biomarker's taxa and metabolites was calculated using the Spearman analysis.Results: The a and ß diversity demonstrated the composition and structure of the gut microbiome in LUAD patients were different from those in healthy people. The top 3abundance of genera were Bacteroides (25.06%), Faecalibacterium (11.00%), and Prevotella (5.94%). The LefSe and logistic regression analysis identified 3 biomarker's taxa (Bacteroides, Pseudomonas, and Ruminococcus gnavus group), and construct a diagnostic model. The AUCs of the diagnostic model in 16s-rRNA sequencing and metagenomics were 0.852 and 0.841, respectively. 102 plasma metabolites were highly related to those three biomarker's taxa. 7 metabolic pathways were enriched by 102 plasma metabolites, including Pentose phosphate pathway, Glutathione metabolism.Conclusions: In LUAD patients, the profile of the gut microbiome has significantly changed. We used 3 biomarker's taxa to develop a diagnostic model, which was accurateand suit for the diagnosis of LUAD. Gut microbes, especially those 3 biomarker's taxa, may participate in the regulation of metabolism-related pathway in LUAD patients, such as pentose phosphate pathway and glutathione metabolism.
Background: Lung adenocarcinoma (LUAD) is one of the most predominant subtypes of lung cancer. The gut microbiome plays a vital role in the pathophysiological processes of various diseases, including cancer.Methods: In the study, 100 individuals were enrolled. 75 stool and blood samples were analyzed with 16s-rRNA sequencing and metabolomics, (30 from healthy individuals(H); 45 from LUAD patients). In addition, 25 stool samples were analyzed with metagenomics (10 from H; 15 from LUAD). The linear discriminant analysis (LDA) effect size (LefSe) and logistic regression analysis were applied to identified biomarker's taxa and to develop a diagnostic model. The diagnostic power of the model was estimated with the receiver operating characteristic curve (ROC) by comparing the area under the ROC (AUC). The correlation between biomarker's taxa and metabolites was calculated using the Spearman analysis.Results: The a and ß diversity demonstrated the composition and structure of the gut microbiome in LUAD patients were different from those in healthy people. The top 3abundance of genera were Bacteroides (25.06%), Faecalibacterium (11.00%), and Prevotella (5.94%). The LefSe and logistic regression analysis identified 3 biomarker's taxa (Bacteroides, Pseudomonas, and Ruminococcus gnavus group), and construct a diagnostic model. The AUCs of the diagnostic model in 16s-rRNA sequencing and metagenomics were 0.852 and 0.841, respectively. 102 plasma metabolites were highly related to those three biomarker's taxa. 7 metabolic pathways were enriched by 102 plasma metabolites, including Pentose phosphate pathway, Glutathione metabolism.Conclusions: In LUAD patients, the profile of the gut microbiome has significantly changed. We used 3 biomarker's taxa to develop a diagnostic model, which was accurateand suit for the diagnosis of LUAD. Gut microbes, especially those 3 biomarker's taxa, may participate in the regulation of metabolism-related pathway in LUAD patients, such as pentose phosphate pathway and glutathione metabolism.