GSE178353
Expression data of Frankia inefficax strain EuI1c under biphenyl stress
Purpose: To compare RNASeq data of Frankia inefficax EuI1c in normal growth conditions to biphenyl-stressed Frankia inefficax EuI1c. Frankia cultures were grown for 3 days under one of three conditions before harvesting: 1.) 1 mM biphenyl stress with glucose as an alternative carbon and energy source, 2.) 1mM biphenyl with no alternative carbon or energy source, or 3.) media with glucose as a carbon and energy source (Control). RNA-seq analysis provided insight into how the the bacteria responds to biphenyl stress and exhibits biphenyl tolerance. Overall design: mRNA profiles of bacteria from Frankia inefficax EuI1c cultures grown under biphenyl stress and no added biphenyl conditions were generated by deep sequencing and mapped to F. inefficax EuI1c genome by CLC Gemonic Workstation. The transcriptome profiles of the biphenyl stressed cells were compared to the control (no biphenyl) condition.