Rarg10x-ALT
Alternative scaffolds for de novo whole genome sequencing of Rhodamnia argentea.
Whole genome sequencing and de novo assembly of the Australian rainforest tree, Rhodamnia argentea, using 10x Chromium linked reads. Supernova v2 assembly of the data generated a 415 Mb draft genome (6.28% gaps) with a maximum scaffold size of 7.63 Mb, primary scaffold N50 of 857 kb (L50=122) and a primary scaffold BUSCO (v2.0.1 short) completeness estimate of 91.8% (6.1% missing). Pseudodiploid processing of the assembly generated non-redundant alternative scaffolds for 255 Mb (61.5%) of the assembly, with an N50 of 1.43 Mb (L50=52, 6.49% gaps, 86.3% BUSCO complete; 11.6% BUSCO missing).
Whole genome sequencing and de novo assembly of the Australian rainforest tree, Rhodamnia argentea, using 10x Chromium linked reads. Supernova v2 assembly of the data generated a 415 Mb draft genome (6.28% gaps) with a maximum scaffold size of 7.63 Mb, primary scaffold N50 of 857 kb (L50=122) and a primary scaffold BUSCO (v2.0.1 short) completeness estimate of 91.8% (6.1% missing). Pseudodiploid processing of the assembly generated non-redundant alternative scaffolds for 255 Mb (61.5%) of the assembly, with an N50 of 1.43 Mb (L50=52, 6.49% gaps, 86.3% BUSCO complete; 11.6% BUSCO missing).