GSE133375
Transcriptome analysis of Wild Type and ?fadR in Shewanella oneidensis MR-1
Purpose: The goals of this study are to find out the differential expression genes in the fadR mutant strain(?fadR) compared with wild-type (WT) and  to further explore the regulation mechanisms of fadR. Methods: Shewanella oneidensis MR-1 WT and ?fadR were collected in log phage(OD~0.6). RNA extraction was performed using the RNeasy minikit (Qiagen) and the RNA was quantified by using a NanoVue spectrophotometer (GE Healthcare). RNA seq was performed using Illumina NextSeq 500, 2×150 bp. Results: Our study represents that the expression of 146 genes were decreased and 94 genes were increased in?fadR compared with WT. Branched-chain keto acid dehydrogenase (BKD) produces corresponding branched-chain acyl coenzyme A which further participating branchend-chain fatty acids synthesis. The expression of bkdA2 was also promoted in ?fadR compared with WT. Conclusions: Combined with our expression results, it declared that FadR can suppress bkd operon in some degree,which further increase the synthesis of branched-chain fatty acids in ?fadR. Overall design: mRNA profiles of Shewanella oneidensis MR-1 and fadR mutant strain were generated by Illumina NextSeq 500