PRJNA449117
E.coracana Synthetic A genome sequence reads
E. indica chloroplast and mitochondrial genes were removed from the E. coracana reads. Then, the filtered E. coracana reads were mapped to E. indica transcriptome (unique CDS) using bowtie2 and then the mapped and unmapped reads were extracted using samtools separately. The mapped and unmapped reads were filtered and reads length below 90 were discarded.