GSE108921
Gene Expression Profiling of WT and KDM3A Knocked out Cell
We identified KDM3A, a demethylase of histone H3K9me1/2, as a positive regulator for hippo target genes.  We found that H3K27ac upregulation is highly correlated with gene activation, but not H3K4me3; and transcription repression of certain TEAD1 target genes, such as BBC3, is important for the pathway function. KDM3A knockout caused upregulation of H3K9me2 mainly on TEAD1-binding enhancers rather than gene bodies, leading to decrease of H3K27ac and TEAD1 binding on enhancers and impaired transcription. Overall design: KDM3A was knocked out in HCT116 and the gene expression profile was studied by RNA sequencing Please note that, in the sample titles, M represents Mock, which means cell cultureed in normal state. S represents Starvation, which mens cells growed up in normal culture in a due time, then change the nomal culture into no-serum culture. S+F means addition of FBS into the no-serum culture after cell-starved for for 24 hours.