GSE123558
Identification of immediate early genes in the nervous system of snail Helix lucorum
Immediate early genes (IEGs) are useful markers of neuronal activation and essential components of neuronal response. While studies of gastropods have provided many insights into the basic learning and memory mechanisms, the genome-wide assessment of IEGs has been mainly restricted to vertebrates. In this study we identified IEGs in the terrestrial snail Helix lucorum. In the absence of the genome, we conducted de novo transcriptome assembly using reads with short and intermediate lengths cumulatively covering more than 98 billion nucleotides. Based on this assembly, we identified 37 proteins corresponding to contigs differentially expressed in either the parietal ganglia or two giant interneurons located within the parietal ganglia of the snail in response to the neuronal stimulation. These proteins included homologues of well-known mammalian IEGs, such as c-jun/jund, C/EBP, c-fos/fosl2 and Egr1, as well as homologues of genes not yet implicated in the neuronal response. Overall design: RNA-Sequencing was conducted to assemble the neuronal transcriptome and identify immediate early genes in the parietal ganglia or two giant interneurons located within the parietal ganglia of snail Helix lucorum Please note that the Samples 25-35 were used for transcriptome assembly (i.e. no quantitative processed data).