GSE196441
Modulation of miR-181 influences dopaminergic neuronal degeneration in a mouse model of Parkinson's disease
Parkinson's disease (PD) is caused by loss of dopaminergic (DA) neurons in the substantia nigra (SN). Although PD pathogenesis is not fully understood, studies implicate perturbations in gene regulation, mitochondrial function, and neuronal activity. MicroRNAs (miRs) are small gene regulatory RNAs that inhibit diverse subsets of target mRNAs, and several studies have noted miR expression alterations in PD brains. For example, miR-181a is abundant in brain and is increased in PD patient brain samples; however, the disease relevance of this remains unclear. Herein, we show that miR-181 target mRNAs are broadly down-regulated in aging and PD brains. To address if the miR-181 family plays a role in PD pathogenesis, we generated adeno-associated viruses (AAV) to overexpress and inhibit miR-181 isoforms. After co-injection with AAV overexpressing alpha-synuclein (aSyn) into mouse SN (PD model), we found that moderate miR-181a/b overexpression exacerbated aSyn-induced DA neuronal loss, whereas miR-181 inhibition was neuroprotective, relative to controls (GFP-alone and/or scrambled RNA). Also, prolonged miR-181 overexpression in SN alone elicited measurable neurotoxicity coincident with an increased immune response. RNA-seq analyses revealed that miR-181a/b inhibits genes involved in synaptic transmission, neurite outgrowth, and mitochondrial respiration, along with several genes having known protective roles and genetic links in PD. Overall design: AAV-virus overexpressing either microRNA-181 or GFP (green fluorescent protein) were injected into the substantia nigra of naive mice. The contralateral side was uninjected and used as control. Total RNA was extracted from sumstantia nigra tissue and prepared for standard polyA mRNA sequencing using the Illumina TruSeq® Stranded mRNA Library Prep kits, multiplexed, and sequenced across two lanes on the HiSeq 4000 or NovaSeq 6000. Reads were aligned and quantified using the kallisto/sleuth pipeline. Supplementary files includes  features for all genes with statistics for differential expression and normalized abundance measurements for each gene in each sample.