Whole-genome variant call sets of a diverse grapevine germplasm collection (Bordeaux, France)
This dataset provides sequencing-derived variant data for 547 grapevine accessions maintained in the Bordeaux germplasm collection: 118 wild Vitis accessions newly sequenced at INRAE EGFV, and 429 Vitis vinifera accessions (397 cultivars and 32 wild ssp. sylvestris) whose sequencing data were reused from Dong et al. 2023 (doi:10.1126/science.add8655). All accessions were processed with the same reference genome, alignment, variant-calling and filtering workflow (MAF >= 0.05), yielding a standardized set of ca. 9.09M SNPs and 0.77M INDELs across nuclear, chloroplast and mitochondrial compartments.
This dataset provides sequencing-derived variant data for 547 grapevine accessions maintained in the Bordeaux germplasm collection: 118 wild Vitis accessions newly sequenced at INRAE EGFV, and 429 Vitis vinifera accessions (397 cultivars and 32 wild ssp. sylvestris) whose sequencing data were reused from Dong et al. 2023 (doi:10.1126/science.add8655). All accessions were processed with the same reference genome, alignment, variant-calling and filtering workflow (MAF >= 0.05), yielding a standardized set of ca. 9.09M SNPs and 0.77M INDELs across nuclear, chloroplast and mitochondrial compartments.