Livestock Manure Raw sequence reads
Shotgun metagenomic sequencing of livestock manure (chicken, pig, cattle, and sheep) and their treatment products, including aerobic composting, anaerobic fermentation, combined treatment, and micro-aerobic fermentation for lactic acid production. Untreated manure, post-treatment products, and surrounding environmental water samples were sequenced to compare the effects of different treatment strategies on the fecal bacterial community and antibiotic resistome.