Small Genome Sequencing (Comparative chloroplast genomics and phylogenetic analysis of the Indonesian shallots (Allium cepa L. var. aggregatum) cultivar Sumenep)
The complete chloroplast genome of the Indonesian shallot (Allium cepa L. var. aggregatum) cultivar Sumenep was sequenced, assembled, and annotated. The genome data were generated to investigate chloroplast genome organization, gene content, codon usage, repetitive sequences, simple sequence repeats (SSRs), nucleotide diversity, and phylogenetic relationships with closely related Allium species. These sequence data provide a genomic resource for comparative chloroplast genomics, evolutionary studies, and genetic diversity analyses in Allium