Synchrosmolt SNP genotypes. 2,730 Atlantic salmon imputed genotypes and 108 WGS-derived parent-population genotypes
SNP genotype submission for the Synchrosmolt Atlantic salmon (Salmo salar) aquaculture study, linked to ENA project PRJEB47441. The submission contains WGS-derived SNP genotypes for 108 parent-population/reference-panel samples and imputed SNP genotypes for 2,730 offspring from 100 full-sib families. The offspring were genotyped using a SNP array and imputed using the parent-population whole-genome-sequencing genotype panel. These genotype data were used for eQTL analysis of smoltification-related developmental variation. The submitted offspring imputed SNP VCF contains 366,437 SNPs, and the submitted parent SNP VCF contains 411,908 SNPs. Parent SNP samples reuse existing WGS BioSamples; offspring SNP genotype samples are registered as new BioSamples but can be linked to same-individual RNA-seq BioSamples by metadata fields same_individual_rnaseq_tag and same_individual_rnaseq_biosample_accession.
SNP genotype submission for the Synchrosmolt Atlantic salmon (Salmo salar) aquaculture study, linked to ENA project PRJEB47441. The submission contains WGS-derived SNP genotypes for 108 parent-population/reference-panel samples and imputed SNP genotypes for 2,730 offspring from 100 full-sib families. The offspring were genotyped using a SNP array and imputed using the parent-population whole-genome-sequencing genotype panel. These genotype data were used for eQTL analysis of smoltification-related developmental variation. The submitted offspring imputed SNP VCF contains 366,437 SNPs, and the submitted parent SNP VCF contains 411,908 SNPs. Parent SNP samples reuse existing WGS BioSamples; offspring SNP genotype samples are registered as new BioSamples but can be linked to same-individual RNA-seq BioSamples by metadata fields same_individual_rnaseq_tag and same_individual_rnaseq_biosample_accession.
European Bioinformatics Institute