Whole-genome sequencing of livestock-associated multidrug resistant ESBL/AmpC E. coli using ONT long-read sequencing
This dataset was used to investigate the genomic diversity, resistome, virulome, phylogenetic relationships and plasmid content of ESBL/AmpC-producing Escherichia coli isolated from livestock in northern Spain. A total of 63 isolates were sequenced: 37 from healthy animals (cattle, pigs, sheep, and chickens) sampled at slaughterhouses, and 26 isolates from diseased cattle submitted for diagnostic investigation. Whole-genome sequencing was performed using Oxford Nanopore Technologies (ONT) long-read sequencing to enable complete reconstruction of chromosomes and plasmids.
This dataset was used to investigate the genomic diversity, resistome, virulome, phylogenetic relationships and plasmid content of ESBL/AmpC-producing Escherichia coli isolated from livestock in northern Spain. A total of 63 isolates were sequenced: 37 from healthy animals (cattle, pigs, sheep, and chickens) sampled at slaughterhouses, and 26 isolates from diseased cattle submitted for diagnostic investigation. Whole-genome sequencing was performed using Oxford Nanopore Technologies (ONT) long-read sequencing to enable complete reconstruction of chromosomes and plasmids.
NEIKER - Basque Institute for Agricultural Research and Development