Transcriptome profiling of roots from Oryza sativa in response to root-knot nematode (RKN, Meloidogyne graminicola) infection
Transcriptome profiling of roots from Oryza sativa ssp. japonica cv. Nipponbare and Nipponbare mutant in response to root-knot nematode (RKN, Meloidogyne graminicola) infection. The experiment aimed to identify differentially expressed genes during early nematode establishment. Roots were collected at three time points: 0 days (uninfected control), 3 days, and 7 days post-inoculation. Each condition had three biological replicates. Total RNA was extracted and rRNA-depleted prior to library construction and sequencing.
Transcriptome profiling of roots from Oryza sativa ssp. japonica cv. Nipponbare and Nipponbare mutant in response to root-knot nematode (RKN, Meloidogyne graminicola) infection. The experiment aimed to identify differentially expressed genes during early nematode establishment. Roots were collected at three time points: 0 days (uninfected control), 3 days, and 7 days post-inoculation. Each condition had three biological replicates. Total RNA was extracted and rRNA-depleted prior to library construction and sequencing.
European Bioinformatics Institute