A haplotype-resolved chromosome-level genome assembly of Female Acrossocheilus longipinnis
Acrossocheilus longipinnis is an economically and ecologically important freshwater fish species widely distributed in southern China. To provide high-quality genomic resources for this species, we generated a haplotype-resolved, chromosome-level genome assembly of a female A. longipinnis. A comprehensive sequencing strategy was employed, incorporating next-generation sequencing (NGS), PacBio HiFi sequencing, Oxford Nanopore Technologies (ONT) ultra-long read sequencing, and Hi-C chromosomal conformation capture. Additionally, RNA-sequencing (RNA-seq) data was generated to facilitate precise gene structure annotation. This dataset provides a critical genomic foundation for future studies on the evolutionary biology, sex-determination mechanisms, and molecular-assisted breeding of A. longipinnis.