ddRAD-seq Genotyping-by-Sequencing of Local Indonesian Rice (Oryza sativa) Accessions for Genetic Characterization and Stress Tolerance
This project presents raw Genotyping-by-Sequencing (GBS) data generated using a double digest restriction-site associated DNA sequencing (ddRAD-seq) approach for a diverse collection of local Indonesian rice (Oryza sativa) accessions. The primary objective of this sequencing effort is to characterize the genetic diversity, population structure, and evolutionary relationships of these local landraces. By discovering high-density single nucleotide polymorphisms (SNPs) across the genome, this dataset provides a foundational resource for downstream genomic analyses, including Genome-Wide Association Studies (GWAS) and Quantitative Trait Locus (QTL) mapping. These genomic resources are essential for identifying genetic markers associated with critical agronomic traits and abiotic stress tolerance or biotic stress resistance, ultimately supporting molecular breeding programs to develop more resilient rice varieties.