Short-read data for a panel of Arabidopsis thaliana lines derived from crosses between 219 ecotypes from Sweden
Swedish Arabidopsis thaliana show interesting phenotypic variation, much of which is likely adaptive. However, they also show strong population structure, which itself often correlated with phenotypic variation, making it difficult to map the genes involved. To address this we crossed parental lines and selfed the offspring to create a panel of inbred lines that preserves the allelic diversity between these ecotypes but with substantially reduced linkage disequilibrium.  Data on 215 parental lines have previously been published by Brachi et al 2022: https://doi.org/10.5281/zenodo.21900423  This repository houses the raw short-read Illumina data for the lines at the F8 and F10 generations. It also includes data for two parental ecotypes (1137 and 1074) that had not previously been published, and two ecotypes (1435 and 5835) that are likely incorrect in the data published by Brachi et al.
Swedish Arabidopsis thaliana show interesting phenotypic variation, much of which is likely adaptive. However, they also show strong population structure, which itself often correlated with phenotypic variation, making it difficult to map the genes involved. To address this we crossed parental lines and selfed the offspring to create a panel of inbred lines that preserves the allelic diversity between these ecotypes but with substantially reduced linkage disequilibrium.  Data on 215 parental lines have previously been published by Brachi et al 2022: https://doi.org/10.5281/zenodo.21900423  This repository houses the raw short-read Illumina data for the lines at the F8 and F10 generations. It also includes data for two parental ecotypes (1137 and 1074) that had not previously been published, and two ecotypes (1435 and 5835) that are likely incorrect in the data published by Brachi et al.