Stability landscape analysis and keystone taxa detection in root prokaryotic community
Diverse root-associated fungi and bacteria play crucial roles in plant nutrient acquisition and stress tolerance depending on their community structure. Despite the fundamental functions of the microbiomes, identifying keystone species or taxa with greatest impacts on the below-ground community assembly remains an essential challenge. We here propose a statistical framework for exploring key microbes that can drastically change the structure stability relationship of complex plant microbiomes. In an analysis of 1270 root samples collected in a cool-temperate forest, we statistically profiled the alternative stable states of fungal and prokaryotic community structure.  In this Bioproject, we described sequencing data of root prokaryotic community.