Assembled vOTUs from the MAMI mother–infant cohort
This study contains assembled viral contigs (vOTUs) derived from shotgun metagenomic sequencing of the MAMI mother–infant cohort. Raw reads from 182 samples (ENA accession PRJEB74322) were assembled per sample, and viral sequences =10 kb were identified with geNomad and clustered into non-redundant vOTUs based on =95% average nucleotide identity (ANI) and =85% alignment fraction (AF). Abundances were estimated by mapping the original raw reads back to the curated contigs and computing CPM/RPK values. This dataset corresponds to the final vOTU catalogue analyzed in the associated manuscript.
This study contains assembled viral contigs (vOTUs) derived from shotgun metagenomic sequencing of the MAMI mother–infant cohort. Raw reads from 182 samples (ENA accession PRJEB74322) were assembled per sample, and viral sequences =10 kb were identified with geNomad and clustered into non-redundant vOTUs based on =95% average nucleotide identity (ANI) and =85% alignment fraction (AF). Abundances were estimated by mapping the original raw reads back to the curated contigs and computing CPM/RPK values. This dataset corresponds to the final vOTU catalogue analyzed in the associated manuscript.