Whole-genome sequencing of YC2013 and IPNv-challenged YC2020 rainbow trout breeding cohorts
This study presents raw whole-genome sequencing data from 130 rainbow trout (Oncorhynchus mykiss) belonging to the Effigen SpA commercial breeding population maintained at Piscicultura Rio Las Marcas, Puerto Varas, Los Lagos Region, Chile. The dataset comprises 102 broodstock animals collected in 2013 (YC2013) with no experimental treatment and 28 animals collected in 2020 (YC2020) that were experimentally challenged with infectious pancreatic necrosis virus (IPNv). The challenged group includes 14 resistant and 14 susceptible animals. Genomic DNA was extracted from fin tissue, and the original paired-end FASTQ files are provided without merging or recompression. These data are intended to support research on genetic diversity, genomic variation, disease resistance, breeding population structure, and the development and validation of genomic tools for rainbow trout.
This study presents raw whole-genome sequencing data from 130 rainbow trout (Oncorhynchus mykiss) belonging to the Effigen SpA commercial breeding population maintained at Piscicultura Rio Las Marcas, Puerto Varas, Los Lagos Region, Chile. The dataset comprises 102 broodstock animals collected in 2013 (YC2013) with no experimental treatment and 28 animals collected in 2020 (YC2020) that were experimentally challenged with infectious pancreatic necrosis virus (IPNv). The challenged group includes 14 resistant and 14 susceptible animals. Genomic DNA was extracted from fin tissue, and the original paired-end FASTQ files are provided without merging or recompression. These data are intended to support research on genetic diversity, genomic variation, disease resistance, breeding population structure, and the development and validation of genomic tools for rainbow trout.